Wall clock time and date at job start Mon Mar 30 2020 08:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 115.55053 * 2 1 4 4 C 1.52997 * 117.50137 * 214.28532 * 2 1 3 5 5 C 1.53001 * 60.00105 * 252.51618 * 4 2 1 6 6 C 1.53000 * 117.52036 * 107.48168 * 5 4 2 7 7 C 1.50699 * 117.49631 * 252.51309 * 5 4 2 8 8 O 1.21291 * 120.00205 * 82.55484 * 7 5 4 9 9 N 1.34781 * 119.99929 * 262.55272 * 7 5 4 10 10 C 1.37098 * 119.99921 * 3.41488 * 9 7 5 11 11 H 1.08006 * 119.99953 * 53.45115 * 10 9 7 12 12 C 1.38954 * 119.99860 * 233.45810 * 10 9 7 13 13 N 1.31411 * 119.99766 * 202.86045 * 12 10 9 14 14 Si 1.86800 * 120.00063 * 22.86626 * 12 10 9 15 15 H 1.48493 * 109.47221 * 85.01394 * 14 12 10 16 16 H 1.48498 * 109.46754 * 205.01798 * 14 12 10 17 17 H 1.48503 * 109.46630 * 325.01349 * 14 12 10 18 18 C 1.46499 * 120.00066 * 183.40998 * 9 7 5 19 19 C 1.55235 * 110.58029 * 293.09652 * 18 9 7 20 20 C 1.54886 * 102.58842 * 203.33872 * 19 18 9 21 21 C 1.54269 * 104.31371 * 37.93486 * 20 19 18 22 22 C 1.53876 * 106.59425 * 336.32458 * 21 20 19 23 23 H 1.08989 * 109.47244 * 274.33532 * 1 2 3 24 24 H 1.09005 * 109.46355 * 34.33733 * 1 2 3 25 25 H 1.08998 * 109.46620 * 154.32956 * 1 2 3 26 26 H 1.08993 * 109.47118 * 205.66558 * 3 2 1 27 27 H 1.09002 * 109.46910 * 325.67022 * 3 2 1 28 28 H 1.08995 * 109.47242 * 85.66312 * 3 2 1 29 29 H 1.09000 * 117.49591 * 145.02203 * 4 2 1 30 30 H 1.09000 * 117.49535 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.47423 * 208.72465 * 6 5 4 32 32 H 1.09001 * 109.47002 * 328.72791 * 6 5 4 33 33 H 1.09000 * 109.46920 * 88.72038 * 6 5 4 34 34 H 0.97005 * 119.99803 * 179.97438 * 13 12 10 35 35 H 1.08996 * 110.43151 * 55.68348 * 18 9 7 36 36 H 1.08999 * 110.89642 * 85.04859 * 19 18 9 37 37 H 1.08999 * 110.76891 * 321.57104 * 19 18 9 38 38 H 1.09003 * 110.48791 * 279.19096 * 20 19 18 39 39 H 1.09004 * 110.48883 * 156.67912 * 20 19 18 40 40 H 1.09004 * 110.03041 * 95.60555 * 21 20 19 41 41 H 1.09001 * 110.03673 * 216.99176 * 21 20 19 42 42 H 1.09005 * 110.03213 * 119.29080 * 22 21 20 43 43 H 1.09004 * 110.03153 * 240.66038 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2366 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7655 6 6 1.3588 -2.1553 1.4728 7 6 3.5292 -0.7805 1.4613 8 8 3.8454 0.3796 1.6202 9 7 4.3340 -1.7654 1.9071 10 6 4.0116 -3.0760 1.6661 11 1 3.8107 -3.4060 0.6575 12 6 3.9432 -3.9796 2.7194 13 7 4.0842 -5.2661 2.4916 14 14 3.6506 -3.3657 4.4592 15 1 2.1923 -3.2059 4.6891 16 1 4.2001 -4.3467 5.4292 17 1 4.3270 -2.0564 4.6423 18 6 5.5534 -1.4356 2.6490 19 6 6.5747 -0.7157 1.7280 20 6 7.9237 -0.9961 2.4356 21 6 7.7887 -2.4426 2.9544 22 6 6.2816 -2.7220 3.0901 23 1 -0.3633 0.0777 1.0246 24 1 -0.3632 0.8487 -0.5797 25 1 -0.3632 -0.9262 -0.4452 26 1 3.1823 1.3087 -0.4451 27 1 1.5810 2.0742 -0.5796 28 1 2.2766 1.7417 1.0247 29 1 3.1717 -0.8756 -1.2678 30 1 1.6113 -1.8587 -1.2678 31 1 1.0429 -1.7637 2.4397 32 1 0.4810 -2.3657 0.8617 33 1 1.9271 -3.0735 1.6207 34 1 4.0368 -5.8970 3.2270 35 1 5.3167 -0.8156 3.5137 36 1 6.3748 0.3551 1.6879 37 1 6.5657 -1.1490 0.7279 38 1 8.0698 -0.3051 3.2658 39 1 8.7489 -0.9202 1.7275 40 1 8.2348 -3.1376 2.2429 41 1 8.2758 -2.5383 3.9249 42 1 5.9963 -3.5528 2.4446 43 1 6.0367 -2.9540 4.1266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705308835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:56 Heat of formation + Delta-G solvation = -20.780272 kcal Electronic energy + Delta-G solvation = -22212.571621 eV Core-core repulsion = 19258.111414 eV Total energy + Delta-G solvation = -2954.460207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48730 -39.53107 -37.60479 -36.06399 -33.85782 -31.40884 -29.68527 -28.84183 -28.73035 -27.63749 -26.69977 -23.69318 -21.82497 -21.01383 -20.80098 -19.74033 -18.34805 -17.61160 -17.11530 -16.36691 -15.93539 -15.79176 -15.43697 -15.03253 -14.71187 -14.49205 -14.23135 -14.21695 -13.80436 -13.72667 -13.28796 -13.12354 -12.99899 -12.88885 -12.64536 -12.57642 -12.42096 -12.05850 -12.00664 -11.95671 -11.81577 -11.76225 -11.56796 -11.33613 -10.82471 -10.55362 -10.35677 -9.95703 -9.36731 -8.49000 -6.11768 1.21248 1.29298 1.39416 1.89703 2.21552 2.62134 2.84744 3.07012 3.73665 3.80489 3.83115 3.95614 4.00578 4.10605 4.29090 4.35450 4.51618 4.55291 4.66844 4.69456 4.78145 4.83297 4.87120 4.88884 4.97073 5.03578 5.06087 5.07638 5.08722 5.12756 5.16992 5.19593 5.25010 5.27993 5.37085 5.46162 5.58120 5.61640 5.66073 5.74410 6.22349 6.39407 7.05921 7.53260 7.92205 8.63277 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.009395 C = 0.007214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.187595 B = 2979.695993 C = 3880.633537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.102 4.102 3 C -0.090 4.090 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.115 4.115 7 C 0.511 3.489 8 O -0.603 6.603 9 N -0.470 5.470 10 C -0.323 4.323 11 H 0.074 0.926 12 C 0.073 3.927 13 N -0.883 5.883 14 Si 0.887 3.113 15 H -0.283 1.283 16 H -0.280 1.280 17 H -0.259 1.259 18 C 0.132 3.868 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.142 4.142 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.278 0.722 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 5.764 -2.256 6.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.102 4.102 3 C -0.147 4.147 4 C -0.179 4.179 5 C -0.142 4.142 6 C -0.172 4.172 7 C 0.302 3.698 8 O -0.489 6.489 9 N -0.191 5.191 10 C -0.451 4.451 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.519 5.519 14 Si 0.713 3.287 15 H -0.210 1.210 16 H -0.205 1.205 17 H -0.184 1.184 18 C 0.028 3.972 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.180 4.180 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.618 6.099 -2.082 6.474 hybrid contribution -0.106 -0.264 1.169 1.203 sum -0.724 5.835 -0.912 5.950 Atomic orbital electron populations 1.21339 0.89794 1.03017 1.02092 1.21832 0.96010 0.90946 1.01419 1.21185 0.98488 0.93724 1.01346 1.23198 1.01954 1.01421 0.91318 1.21249 0.95749 1.02232 0.95011 1.21475 0.98346 0.99109 0.98256 1.20256 0.84561 0.84396 0.80573 1.90490 1.76103 1.20435 1.61827 1.43857 1.18637 1.05806 1.50832 1.18335 1.49858 0.82684 0.94179 0.90881 1.25680 0.93347 0.94573 0.99711 1.69843 1.45190 1.02499 1.34340 0.86889 0.78576 0.79760 0.83428 1.20964 1.20512 1.18425 1.22037 0.85705 0.95786 0.93628 1.22695 0.95160 0.99448 0.98246 1.22300 0.96266 0.96268 1.00114 1.22076 0.94260 0.97160 1.01708 1.22720 0.96036 0.99034 1.00168 0.92553 0.90285 0.91303 0.94577 0.91241 0.93289 0.90339 0.86800 0.94782 0.90814 0.89941 0.91157 0.93822 0.92326 0.92833 0.90877 0.89739 0.91264 0.90609 0.88528 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 8.69 71.98 0.63 -2.06 16 2 C -0.10 -3.36 2.70 -52.18 -0.14 -3.50 16 3 C -0.09 -3.05 8.11 71.98 0.58 -2.47 16 4 C -0.14 -4.87 9.22 30.59 0.28 -4.58 16 5 C -0.14 -5.59 1.98 -52.93 -0.10 -5.70 16 6 C -0.12 -4.52 8.76 71.98 0.63 -3.89 16 7 C 0.51 24.03 6.86 87.66 0.60 24.63 16 8 O -0.60 -29.74 12.41 -3.06 -0.04 -29.78 16 9 N -0.47 -22.51 1.98 -606.94 -1.20 -23.71 16 10 C -0.32 -16.16 5.10 84.04 0.43 -15.73 16 11 H 0.07 3.99 8.02 -2.91 -0.02 3.97 16 12 C 0.07 3.67 2.79 84.93 0.24 3.91 16 13 N -0.88 -46.18 13.95 21.66 0.30 -45.88 16 14 Si 0.89 41.36 24.82 68.60 1.70 43.07 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.26 -12.25 4.94 99.48 0.49 -11.76 16 18 C 0.13 5.86 1.87 46.19 0.09 5.94 16 19 C -0.12 -4.55 5.89 32.01 0.19 -4.36 16 20 C -0.11 -3.41 6.82 31.67 0.22 -3.19 16 21 C -0.11 -3.72 6.80 31.32 0.21 -3.50 16 22 C -0.14 -5.95 4.37 31.32 0.14 -5.82 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.65 7.92 -2.38 -0.02 1.63 16 25 H 0.07 1.58 7.25 -2.39 -0.02 1.57 16 26 H 0.04 1.32 7.42 -2.39 -0.02 1.30 16 27 H 0.07 1.86 7.92 -2.39 -0.02 1.84 16 28 H 0.05 1.87 6.94 -2.39 -0.02 1.85 16 29 H 0.08 2.83 8.05 -2.39 -0.02 2.81 16 30 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 2.39 6.85 -2.39 -0.02 2.38 16 33 H 0.08 3.72 4.77 -2.39 -0.01 3.71 16 34 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 35 H 0.04 2.08 7.12 -2.39 -0.02 2.06 16 36 H 0.06 2.36 7.63 -2.39 -0.02 2.34 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.10 4.61 5.11 -2.38 -0.01 4.60 16 43 H 0.04 1.70 5.11 -2.38 -0.01 1.69 16 Total: -1.00 -56.94 315.73 5.51 -51.43 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.76 Total: 25.19 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 3.98 Total: -20.32 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -0.90 Total: -69.59 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.04 Total: -29.78 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.70 Total: 43.07 kcal Total: -56.94 5.51 -51.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705308835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.648 kcal (2) G-P(sol) polarization free energy of solvation -56.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds