Wall clock time and date at job start Mon Mar 30 2020 08:04:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52999 * 115.55053 * 2 1
4 4 C 1.52997 * 117.50137 * 214.28532 * 2 1 3
5 5 C 1.53001 * 60.00105 * 252.51618 * 4 2 1
6 6 C 1.53000 * 117.52036 * 107.48168 * 5 4 2
7 7 C 1.50699 * 117.49631 * 252.51309 * 5 4 2
8 8 O 1.21291 * 120.00205 * 82.55484 * 7 5 4
9 9 N 1.34781 * 119.99929 * 262.55272 * 7 5 4
10 10 C 1.37098 * 119.99921 * 3.41488 * 9 7 5
11 11 H 1.08006 * 119.99953 * 53.45115 * 10 9 7
12 12 C 1.38954 * 119.99860 * 233.45810 * 10 9 7
13 13 N 1.31411 * 119.99766 * 202.86045 * 12 10 9
14 14 Si 1.86800 * 120.00063 * 22.86626 * 12 10 9
15 15 H 1.48493 * 109.47221 * 85.01394 * 14 12 10
16 16 H 1.48498 * 109.46754 * 205.01798 * 14 12 10
17 17 H 1.48503 * 109.46630 * 325.01349 * 14 12 10
18 18 C 1.46499 * 120.00066 * 183.40998 * 9 7 5
19 19 C 1.55235 * 110.58029 * 293.09652 * 18 9 7
20 20 C 1.54886 * 102.58842 * 203.33872 * 19 18 9
21 21 C 1.54269 * 104.31371 * 37.93486 * 20 19 18
22 22 C 1.53876 * 106.59425 * 336.32458 * 21 20 19
23 23 H 1.08989 * 109.47244 * 274.33532 * 1 2 3
24 24 H 1.09005 * 109.46355 * 34.33733 * 1 2 3
25 25 H 1.08998 * 109.46620 * 154.32956 * 1 2 3
26 26 H 1.08993 * 109.47118 * 205.66558 * 3 2 1
27 27 H 1.09002 * 109.46910 * 325.67022 * 3 2 1
28 28 H 1.08995 * 109.47242 * 85.66312 * 3 2 1
29 29 H 1.09000 * 117.49591 * 145.02203 * 4 2 1
30 30 H 1.09000 * 117.49535 * 0.02562 * 4 2 1
31 31 H 1.08996 * 109.47423 * 208.72465 * 6 5 4
32 32 H 1.09001 * 109.47002 * 328.72791 * 6 5 4
33 33 H 1.09000 * 109.46920 * 88.72038 * 6 5 4
34 34 H 0.97005 * 119.99803 * 179.97438 * 13 12 10
35 35 H 1.08996 * 110.43151 * 55.68348 * 18 9 7
36 36 H 1.08999 * 110.89642 * 85.04859 * 19 18 9
37 37 H 1.08999 * 110.76891 * 321.57104 * 19 18 9
38 38 H 1.09003 * 110.48791 * 279.19096 * 20 19 18
39 39 H 1.09004 * 110.48883 * 156.67912 * 20 19 18
40 40 H 1.09004 * 110.03041 * 95.60555 * 21 20 19
41 41 H 1.09001 * 110.03673 * 216.99176 * 21 20 19
42 42 H 1.09005 * 110.03213 * 119.29080 * 22 21 20
43 43 H 1.09004 * 110.03153 * 240.66038 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.1900 1.3804 0.0000
4 6 2.2366 -1.1213 -0.7645
5 6 2.2364 -1.1207 0.7655
6 6 1.3588 -2.1553 1.4728
7 6 3.5292 -0.7805 1.4613
8 8 3.8454 0.3796 1.6202
9 7 4.3340 -1.7654 1.9071
10 6 4.0116 -3.0760 1.6661
11 1 3.8107 -3.4060 0.6575
12 6 3.9432 -3.9796 2.7194
13 7 4.0842 -5.2661 2.4916
14 14 3.6506 -3.3657 4.4592
15 1 2.1923 -3.2059 4.6891
16 1 4.2001 -4.3467 5.4292
17 1 4.3270 -2.0564 4.6423
18 6 5.5534 -1.4356 2.6490
19 6 6.5747 -0.7157 1.7280
20 6 7.9237 -0.9961 2.4356
21 6 7.7887 -2.4426 2.9544
22 6 6.2816 -2.7220 3.0901
23 1 -0.3633 0.0777 1.0246
24 1 -0.3632 0.8487 -0.5797
25 1 -0.3632 -0.9262 -0.4452
26 1 3.1823 1.3087 -0.4451
27 1 1.5810 2.0742 -0.5796
28 1 2.2766 1.7417 1.0247
29 1 3.1717 -0.8756 -1.2678
30 1 1.6113 -1.8587 -1.2678
31 1 1.0429 -1.7637 2.4397
32 1 0.4810 -2.3657 0.8617
33 1 1.9271 -3.0735 1.6207
34 1 4.0368 -5.8970 3.2270
35 1 5.3167 -0.8156 3.5137
36 1 6.3748 0.3551 1.6879
37 1 6.5657 -1.1490 0.7279
38 1 8.0698 -0.3051 3.2658
39 1 8.7489 -0.9202 1.7275
40 1 8.2348 -3.1376 2.2429
41 1 8.2758 -2.5383 3.9249
42 1 5.9963 -3.5528 2.4446
43 1 6.0367 -2.9540 4.1266
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000705308835.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 08:04:56
Heat of formation + Delta-G solvation = -20.780272 kcal
Electronic energy + Delta-G solvation = -22212.571621 eV
Core-core repulsion = 19258.111414 eV
Total energy + Delta-G solvation = -2954.460207 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.48730 -39.53107 -37.60479 -36.06399 -33.85782 -31.40884 -29.68527 -28.84183
-28.73035 -27.63749 -26.69977 -23.69318 -21.82497 -21.01383 -20.80098 -19.74033
-18.34805 -17.61160 -17.11530 -16.36691 -15.93539 -15.79176 -15.43697 -15.03253
-14.71187 -14.49205 -14.23135 -14.21695 -13.80436 -13.72667 -13.28796 -13.12354
-12.99899 -12.88885 -12.64536 -12.57642 -12.42096 -12.05850 -12.00664 -11.95671
-11.81577 -11.76225 -11.56796 -11.33613 -10.82471 -10.55362 -10.35677 -9.95703
-9.36731 -8.49000 -6.11768 1.21248 1.29298 1.39416 1.89703 2.21552
2.62134 2.84744 3.07012 3.73665 3.80489 3.83115 3.95614 4.00578
4.10605 4.29090 4.35450 4.51618 4.55291 4.66844 4.69456 4.78145
4.83297 4.87120 4.88884 4.97073 5.03578 5.06087 5.07638 5.08722
5.12756 5.16992 5.19593 5.25010 5.27993 5.37085 5.46162 5.58120
5.61640 5.66073 5.74410 6.22349 6.39407 7.05921 7.53260 7.92205
8.63277
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.018886 B = 0.009395 C = 0.007214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1482.187595 B = 2979.695993 C = 3880.633537
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.102 4.102
3 C -0.090 4.090
4 C -0.141 4.141
5 C -0.140 4.140
6 C -0.115 4.115
7 C 0.511 3.489
8 O -0.603 6.603
9 N -0.470 5.470
10 C -0.323 4.323
11 H 0.074 0.926
12 C 0.073 3.927
13 N -0.883 5.883
14 Si 0.887 3.113
15 H -0.283 1.283
16 H -0.280 1.280
17 H -0.259 1.259
18 C 0.132 3.868
19 C -0.117 4.117
20 C -0.112 4.112
21 C -0.114 4.114
22 C -0.142 4.142
23 H 0.055 0.945
24 H 0.078 0.922
25 H 0.068 0.932
26 H 0.035 0.965
27 H 0.069 0.931
28 H 0.048 0.952
29 H 0.078 0.922
30 H 0.114 0.886
31 H 0.033 0.967
32 H 0.073 0.927
33 H 0.082 0.918
34 H 0.278 0.722
35 H 0.044 0.956
36 H 0.058 0.942
37 H 0.053 0.947
38 H 0.073 0.927
39 H 0.084 0.916
40 H 0.069 0.931
41 H 0.075 0.925
42 H 0.096 0.904
43 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.820 5.764 -2.256 6.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.102 4.102
3 C -0.147 4.147
4 C -0.179 4.179
5 C -0.142 4.142
6 C -0.172 4.172
7 C 0.302 3.698
8 O -0.489 6.489
9 N -0.191 5.191
10 C -0.451 4.451
11 H 0.091 0.909
12 C -0.133 4.133
13 N -0.519 5.519
14 Si 0.713 3.287
15 H -0.210 1.210
16 H -0.205 1.205
17 H -0.184 1.184
18 C 0.028 3.972
19 C -0.155 4.155
20 C -0.149 4.149
21 C -0.152 4.152
22 C -0.180 4.180
23 H 0.074 0.926
24 H 0.097 0.903
25 H 0.087 0.913
26 H 0.054 0.946
27 H 0.088 0.912
28 H 0.067 0.933
29 H 0.097 0.903
30 H 0.132 0.868
31 H 0.052 0.948
32 H 0.092 0.908
33 H 0.101 0.899
34 H 0.088 0.912
35 H 0.062 0.938
36 H 0.077 0.923
37 H 0.072 0.928
38 H 0.091 0.909
39 H 0.103 0.897
40 H 0.087 0.913
41 H 0.094 0.906
42 H 0.115 0.885
43 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -0.618 6.099 -2.082 6.474
hybrid contribution -0.106 -0.264 1.169 1.203
sum -0.724 5.835 -0.912 5.950
Atomic orbital electron populations
1.21339 0.89794 1.03017 1.02092 1.21832 0.96010 0.90946 1.01419
1.21185 0.98488 0.93724 1.01346 1.23198 1.01954 1.01421 0.91318
1.21249 0.95749 1.02232 0.95011 1.21475 0.98346 0.99109 0.98256
1.20256 0.84561 0.84396 0.80573 1.90490 1.76103 1.20435 1.61827
1.43857 1.18637 1.05806 1.50832 1.18335 1.49858 0.82684 0.94179
0.90881 1.25680 0.93347 0.94573 0.99711 1.69843 1.45190 1.02499
1.34340 0.86889 0.78576 0.79760 0.83428 1.20964 1.20512 1.18425
1.22037 0.85705 0.95786 0.93628 1.22695 0.95160 0.99448 0.98246
1.22300 0.96266 0.96268 1.00114 1.22076 0.94260 0.97160 1.01708
1.22720 0.96036 0.99034 1.00168 0.92553 0.90285 0.91303 0.94577
0.91241 0.93289 0.90339 0.86800 0.94782 0.90814 0.89941 0.91157
0.93822 0.92326 0.92833 0.90877 0.89739 0.91264 0.90609 0.88528
0.94149
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.69 8.69 71.98 0.63 -2.06 16
2 C -0.10 -3.36 2.70 -52.18 -0.14 -3.50 16
3 C -0.09 -3.05 8.11 71.98 0.58 -2.47 16
4 C -0.14 -4.87 9.22 30.59 0.28 -4.58 16
5 C -0.14 -5.59 1.98 -52.93 -0.10 -5.70 16
6 C -0.12 -4.52 8.76 71.98 0.63 -3.89 16
7 C 0.51 24.03 6.86 87.66 0.60 24.63 16
8 O -0.60 -29.74 12.41 -3.06 -0.04 -29.78 16
9 N -0.47 -22.51 1.98 -606.94 -1.20 -23.71 16
10 C -0.32 -16.16 5.10 84.04 0.43 -15.73 16
11 H 0.07 3.99 8.02 -2.91 -0.02 3.97 16
12 C 0.07 3.67 2.79 84.93 0.24 3.91 16
13 N -0.88 -46.18 13.95 21.66 0.30 -45.88 16
14 Si 0.89 41.36 24.82 68.60 1.70 43.07 16
15 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16
16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16
17 H -0.26 -12.25 4.94 99.48 0.49 -11.76 16
18 C 0.13 5.86 1.87 46.19 0.09 5.94 16
19 C -0.12 -4.55 5.89 32.01 0.19 -4.36 16
20 C -0.11 -3.41 6.82 31.67 0.22 -3.19 16
21 C -0.11 -3.72 6.80 31.32 0.21 -3.50 16
22 C -0.14 -5.95 4.37 31.32 0.14 -5.82 16
23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
24 H 0.08 1.65 7.92 -2.38 -0.02 1.63 16
25 H 0.07 1.58 7.25 -2.39 -0.02 1.57 16
26 H 0.04 1.32 7.42 -2.39 -0.02 1.30 16
27 H 0.07 1.86 7.92 -2.39 -0.02 1.84 16
28 H 0.05 1.87 6.94 -2.39 -0.02 1.85 16
29 H 0.08 2.83 8.05 -2.39 -0.02 2.81 16
30 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16
31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16
32 H 0.07 2.39 6.85 -2.39 -0.02 2.38 16
33 H 0.08 3.72 4.77 -2.39 -0.01 3.71 16
34 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16
35 H 0.04 2.08 7.12 -2.39 -0.02 2.06 16
36 H 0.06 2.36 7.63 -2.39 -0.02 2.34 16
37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16
38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
39 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16
40 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16
41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
42 H 0.10 4.61 5.11 -2.38 -0.01 4.60 16
43 H 0.04 1.70 5.11 -2.38 -0.01 1.69 16
Total: -1.00 -56.94 315.73 5.51 -51.43
By element:
Atomic # 1 Polarization: 24.43 SS G_CDS: 0.76 Total: 25.19 kcal
Atomic # 6 Polarization: -24.30 SS G_CDS: 3.98 Total: -20.32 kcal
Atomic # 7 Polarization: -68.69 SS G_CDS: -0.90 Total: -69.59 kcal
Atomic # 8 Polarization: -29.74 SS G_CDS: -0.04 Total: -29.78 kcal
Atomic # 14 Polarization: 41.36 SS G_CDS: 1.70 Total: 43.07 kcal
Total: -56.94 5.51 -51.43 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705308835.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.648 kcal
(2) G-P(sol) polarization free energy of solvation -56.939 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.290 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.780 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds