Wall clock time and date at job start Mon Mar 30 2020 06:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47428 * 300.00360 * 3 2 1 6 6 H 1.48501 * 109.46925 * 60.00261 * 3 2 1 7 7 C 1.38809 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 165.55112 * 7 2 1 9 9 N 1.36941 * 119.99754 * 345.54345 * 7 2 1 10 10 C 1.46496 * 120.00201 * 307.93824 * 9 7 2 11 11 C 1.52997 * 117.50180 * 1.99868 * 10 9 7 12 12 C 1.52995 * 60.00117 * 252.51152 * 11 10 9 13 13 C 1.46497 * 119.99507 * 127.94040 * 9 7 2 14 14 H 1.09002 * 109.55033 * 179.80376 * 13 9 7 15 15 C 1.53182 * 109.55672 * 59.50338 * 13 9 7 16 16 C 1.53080 * 109.24131 * 182.84831 * 15 13 9 17 17 O 1.42975 * 109.38675 * 57.92776 * 16 15 13 18 18 C 1.42529 * 114.14077 * 299.50959 * 17 16 15 19 19 C 1.54002 * 109.81187 * 299.08539 * 18 17 16 20 20 C 1.54950 * 104.12976 * 264.06291 * 19 18 17 21 21 C 1.54914 * 102.77975 * 322.28767 * 20 19 18 22 22 C 1.53598 * 110.07033 * 181.68576 * 18 17 16 23 23 C 1.52777 * 110.34358 * 60.14623 * 18 17 16 24 24 H 0.97003 * 120.00116 * 356.53696 * 1 2 3 25 25 H 1.09001 * 115.55018 * 147.71146 * 10 9 7 26 26 H 1.09004 * 117.49699 * 0.02562 * 11 10 9 27 27 H 1.08999 * 117.49782 * 145.01319 * 11 10 9 28 28 H 1.09004 * 117.49632 * 252.50864 * 12 11 10 29 29 H 1.08999 * 117.51941 * 107.48153 * 12 11 10 30 30 H 1.08997 * 109.50866 * 302.78334 * 15 13 9 31 31 H 1.09004 * 109.50768 * 62.87189 * 15 13 9 32 32 H 1.09002 * 109.48236 * 177.89802 * 16 15 13 33 33 H 1.08995 * 109.49318 * 297.93182 * 16 15 13 34 34 H 1.09003 * 110.50007 * 145.40250 * 19 18 17 35 35 H 1.09002 * 110.49819 * 22.72735 * 19 18 17 36 36 H 1.08999 * 110.74581 * 80.61007 * 20 19 18 37 37 H 1.09000 * 110.75118 * 203.95934 * 20 19 18 38 38 H 1.09001 * 110.48435 * 156.47470 * 21 20 19 39 39 H 1.08997 * 110.48455 * 279.11328 * 21 20 19 40 40 H 1.08989 * 110.05332 * 0.02562 * 22 18 17 41 41 H 1.09004 * 110.09540 * 238.56545 * 22 18 17 42 42 H 1.09003 * 109.51556 * 63.21432 * 23 18 17 43 43 H 1.08999 * 109.52111 * 183.39337 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0646 -1.2168 -0.2339 9 7 1.3580 -2.3694 0.2950 10 6 0.5607 -2.4732 1.5196 11 6 0.4577 -1.2284 2.4032 12 6 1.3060 -2.4190 2.8546 13 6 1.4577 -3.5143 -0.6135 14 1 0.8802 -4.3481 -0.2142 15 6 2.9256 -3.9276 -0.7583 16 6 3.0290 -5.0778 -1.7631 17 8 2.4795 -4.6639 -3.0165 18 6 1.1046 -4.2934 -2.9563 19 6 0.2600 -5.4950 -2.4932 20 6 -0.2527 -6.1275 -3.8115 21 6 -0.5393 -4.8891 -4.6970 22 6 0.6010 -3.9070 -4.3550 23 6 0.9111 -3.1250 -1.9911 24 1 -0.4850 0.8385 0.0507 25 1 -0.3141 -3.1205 1.4575 26 1 0.9829 -0.3321 2.0732 27 1 -0.4851 -1.0565 2.9225 28 1 0.9213 -3.0303 3.6710 29 1 2.3897 -2.3064 2.8218 30 1 3.5092 -3.0790 -1.1150 31 1 3.3094 -4.2526 0.2088 32 1 4.0759 -5.3503 -1.8974 33 1 2.4745 -5.9384 -1.3892 34 1 -0.5766 -5.1599 -1.8800 35 1 0.8768 -6.2058 -1.9433 36 1 0.5155 -6.7555 -4.2628 37 1 -1.1654 -6.6973 -3.6371 38 1 -0.5065 -5.1591 -5.7525 39 1 -1.5061 -4.4544 -4.4434 40 1 1.4073 -4.0026 -5.0821 41 1 0.2239 -2.8843 -4.3479 42 1 1.4487 -2.2527 -2.3630 43 1 -0.1505 -2.8921 -1.9093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706731106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:23 Heat of formation + Delta-G solvation = -21.503189 kcal Electronic energy + Delta-G solvation = -21948.155070 eV Core-core repulsion = 18993.663515 eV Total energy + Delta-G solvation = -2954.491555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25161 -38.74204 -36.92895 -35.26296 -33.94082 -31.45043 -30.97109 -29.61571 -26.96211 -25.84933 -24.49125 -22.75867 -22.28246 -21.78486 -21.12604 -19.84968 -18.22698 -17.40742 -17.05036 -16.54412 -16.39760 -16.16325 -15.46694 -15.31624 -14.97892 -14.76593 -14.03757 -13.93255 -13.89437 -13.36714 -13.15553 -12.89288 -12.72924 -12.58907 -12.45280 -12.22823 -12.09111 -12.01062 -11.96011 -11.69015 -11.63869 -11.53714 -11.38392 -11.07243 -10.86229 -10.64705 -10.18920 -10.15798 -8.31220 -7.68633 -5.60626 1.36596 1.42269 1.49485 2.44416 2.93285 3.21839 3.42290 3.59556 3.73135 3.75092 4.05971 4.13504 4.28394 4.34730 4.39857 4.42366 4.54339 4.59888 4.61989 4.68193 4.69608 4.78512 4.85733 4.87271 4.90098 4.96874 5.02791 5.08805 5.09475 5.19815 5.21113 5.22739 5.30740 5.46329 5.50276 5.51928 5.56300 5.67060 5.72415 5.78241 6.51652 6.56942 7.26963 7.83848 8.46657 9.13102 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.006865 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.825144 B = 4077.798292 C = 4419.513876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.005 3.995 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.272 4.272 8 H 0.037 0.963 9 N -0.561 5.561 10 C 0.133 3.867 11 C -0.165 4.165 12 C -0.215 4.215 13 C 0.178 3.822 14 H 0.059 0.941 15 C -0.153 4.153 16 C 0.065 3.935 17 O -0.388 6.388 18 C 0.116 3.884 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.117 4.117 24 H 0.250 0.750 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -12.139 -4.394 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.196 4.196 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.403 4.403 8 H 0.054 0.946 9 N -0.279 5.279 10 C 0.025 3.975 11 C -0.204 4.204 12 C -0.256 4.256 13 C 0.072 3.928 14 H 0.077 0.923 15 C -0.192 4.192 16 C -0.011 4.011 17 O -0.308 6.308 18 C 0.076 3.924 19 C -0.185 4.185 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.156 4.156 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.151 -11.992 -4.641 12.860 hybrid contribution 0.276 1.830 0.529 1.925 sum 0.125 -10.162 -4.112 10.963 Atomic orbital electron populations 1.70209 1.06227 1.25785 1.50706 1.25883 0.95511 1.00633 0.97609 0.85851 0.79341 0.81940 0.77133 1.19778 1.21699 1.21001 1.18688 0.90739 0.85472 1.45417 0.94566 1.43377 1.56203 1.10074 1.18236 1.20835 0.94405 0.99169 0.83127 1.22822 0.99828 0.93946 1.03760 1.23443 0.97891 1.03381 1.00887 1.20512 0.93825 0.89247 0.89213 0.92300 1.22482 0.98722 0.98575 0.99453 1.22687 0.99526 0.95314 0.83599 1.87820 1.25242 1.86135 1.31590 1.21996 0.81640 0.93248 0.95487 1.22962 0.99554 0.97092 0.98900 1.22450 1.01361 0.96997 0.94237 1.22359 0.97287 0.95189 1.00647 1.22148 0.98808 0.99540 0.94738 1.22279 0.99531 0.97127 0.96699 0.94106 0.89988 0.90358 0.90968 0.88517 0.91247 0.93927 0.91525 0.87694 0.91493 0.91556 0.90271 0.90793 0.90000 0.89788 0.91590 0.90796 0.92437 0.94875 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.06 11.57 21.65 0.25 -49.81 16 2 C 0.00 0.25 3.14 84.86 0.27 0.52 16 3 Si 0.93 44.25 29.44 68.60 2.02 46.27 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.27 -14.68 7.35 84.03 0.62 -14.06 16 8 H 0.04 2.06 7.04 -2.91 -0.02 2.04 16 9 N -0.56 -27.25 2.58 -653.48 -1.69 -28.93 16 10 C 0.13 6.09 5.98 44.99 0.27 6.36 16 11 C -0.17 -7.67 8.34 30.59 0.26 -7.42 16 12 C -0.22 -8.77 10.37 30.59 0.32 -8.45 16 13 C 0.18 7.38 2.52 45.13 0.11 7.49 16 14 H 0.06 2.27 7.23 -2.39 -0.02 2.25 16 15 C -0.15 -5.67 5.41 30.68 0.17 -5.51 16 16 C 0.07 1.95 6.57 72.01 0.47 2.42 16 17 O -0.39 -13.18 10.15 -148.98 -1.51 -14.69 16 18 C 0.12 3.84 0.98 -10.33 -0.01 3.83 16 19 C -0.15 -4.01 4.92 31.60 0.16 -3.86 16 20 C -0.11 -2.46 6.91 31.92 0.22 -2.24 16 21 C -0.12 -2.71 6.84 31.70 0.22 -2.49 16 22 C -0.11 -3.44 6.26 31.25 0.20 -3.24 16 23 C -0.12 -4.90 3.84 30.60 0.12 -4.78 16 24 H 0.25 13.71 8.32 -92.71 -0.77 12.94 16 25 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 26 H 0.08 4.12 5.08 -2.38 -0.01 4.11 16 27 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.04 1.82 7.05 -2.39 -0.02 1.81 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 1.72 6.06 -2.39 -0.01 1.71 16 34 H 0.07 1.91 7.74 -2.39 -0.02 1.89 16 35 H 0.08 2.00 5.82 -2.39 -0.01 1.98 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 2.15 7.95 -2.39 -0.02 2.14 16 41 H 0.06 1.89 7.67 -2.38 -0.02 1.87 16 42 H 0.03 1.63 7.55 -2.39 -0.02 1.61 16 43 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 Total: -1.00 -59.72 321.49 3.41 -56.31 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.97 Total: 22.27 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 3.37 Total: -31.42 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.43 Total: -78.74 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.51 Total: -14.69 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.02 Total: 46.27 kcal Total: -59.72 3.41 -56.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706731106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.803 kcal (2) G-P(sol) polarization free energy of solvation -59.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds