Wall clock time and date at job start Mon Mar 30 2020 06:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47232 * 2 1 4 4 C 1.50703 * 109.47251 * 239.99922 * 2 1 3 5 5 C 1.38222 * 120.01184 * 267.53368 * 4 2 1 6 6 C 1.38222 * 120.02677 * 180.02562 * 5 4 2 7 7 C 1.38263 * 120.04918 * 359.97438 * 6 5 4 8 8 C 1.38176 * 120.02596 * 0.02562 * 7 6 5 9 9 C 1.38434 * 120.01458 * 87.55255 * 4 2 1 10 10 F 1.35105 * 120.02212 * 0.02562 * 9 4 2 11 11 N 1.46902 * 109.47129 * 120.00040 * 2 1 3 12 12 C 1.46905 * 110.99810 * 311.92049 * 11 2 1 13 13 C 1.46898 * 111.00137 * 187.97061 * 11 2 1 14 14 H 1.09006 * 109.47126 * 309.27095 * 13 11 2 15 15 C 1.53003 * 109.47426 * 69.26693 * 13 11 2 16 16 C 1.52997 * 109.47340 * 189.27060 * 13 11 2 17 17 C 1.50699 * 109.47128 * 64.99707 * 16 13 11 18 18 H 1.08002 * 120.00267 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99923 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00355 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00035 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47267 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46796 * 120.00426 * 21 19 17 24 24 H 1.48501 * 109.47636 * 240.00364 * 21 19 17 25 25 H 1.08997 * 109.46899 * 186.21401 * 1 2 3 26 26 H 1.08998 * 109.46851 * 306.21064 * 1 2 3 27 27 H 1.08994 * 109.46992 * 66.21188 * 1 2 3 28 28 H 1.08006 * 119.98655 * 359.97438 * 5 4 2 29 29 H 1.07993 * 119.97564 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.98588 * 179.72638 * 7 6 5 31 31 H 1.08008 * 120.01459 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.46662 * 64.90145 * 12 11 2 33 33 H 1.09005 * 109.46816 * 184.89588 * 12 11 2 34 34 H 1.08997 * 109.47070 * 304.89685 * 12 11 2 35 35 H 1.09006 * 109.46734 * 64.33016 * 15 13 11 36 36 H 1.08997 * 109.47579 * 184.32941 * 15 13 11 37 37 H 1.09000 * 109.47014 * 304.33866 * 15 13 11 38 38 H 1.09007 * 109.47284 * 184.99881 * 16 13 11 39 39 H 1.09001 * 109.47099 * 305.00187 * 16 13 11 40 40 H 0.97000 * 120.00460 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.3114 -2.0633 -1.1822 6 6 2.7727 -2.7151 -2.3104 7 6 2.9550 -2.0149 -3.4886 8 6 2.6768 -0.6624 -3.5392 9 6 2.2150 -0.0083 -2.4095 10 9 1.9434 1.3143 -2.4575 11 7 2.0197 -0.6925 1.1994 12 6 1.3313 -0.2096 2.4040 13 6 3.4756 -0.5496 1.3323 14 1 3.9550 -0.8255 0.3930 15 6 3.8168 0.9028 1.6716 16 6 3.9782 -1.4660 2.4497 17 6 3.7526 -2.9040 2.0597 18 1 3.2968 -3.1408 1.1096 19 6 4.1291 -3.9175 2.9153 20 7 4.6846 -3.6293 4.0720 21 14 3.8488 -5.7001 2.4321 22 1 3.2124 -5.7555 1.0916 23 1 5.1513 -6.4124 2.3912 24 1 2.9606 -6.3496 3.4294 25 1 -0.3633 -1.0216 0.1112 26 1 -0.3633 0.6071 0.8292 27 1 -0.3633 0.4145 -0.9403 28 1 2.1697 -2.6112 -0.2622 29 1 2.9900 -3.7723 -2.2719 30 1 3.3197 -2.5243 -4.3683 31 1 2.8189 -0.1157 -4.4598 32 1 0.2741 -0.4690 2.3468 33 1 1.7723 -0.6748 3.2856 34 1 1.4366 0.8730 2.4733 35 1 3.4017 1.1550 2.6475 36 1 4.8996 1.0259 1.6945 37 1 3.3920 1.5621 0.9147 38 1 5.0431 -1.2952 2.6084 39 1 3.4345 -1.2494 3.3693 40 1 4.9491 -4.3424 4.6741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:42 Heat of formation + Delta-G solvation = -18.963092 kcal Electronic energy + Delta-G solvation = -21095.158590 eV Core-core repulsion = 18017.316877 eV Total energy + Delta-G solvation = -3077.841713 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.68814 -39.39706 -37.54983 -33.68271 -32.15364 -30.49145 -30.11947 -28.17464 -27.37795 -25.81193 -23.34714 -22.90467 -22.07150 -20.27956 -18.60110 -17.36467 -16.35132 -16.21933 -15.85195 -15.37101 -15.18688 -14.56873 -14.20650 -13.87664 -13.61213 -13.25490 -12.86054 -12.52291 -12.37618 -12.26883 -12.04601 -11.92806 -11.70052 -11.48146 -11.31044 -11.03813 -10.97740 -10.66615 -10.62110 -10.47421 -10.28639 -9.95146 -9.18042 -8.94377 -8.57145 -8.38340 -8.26799 -7.50863 -5.90291 -3.88162 1.41252 1.53283 3.35861 3.43885 3.46528 3.88738 4.39027 4.53677 4.57247 4.88278 5.04812 5.30015 5.44296 5.47395 5.49492 5.52382 5.72084 5.76795 5.86174 5.91356 5.94686 6.01343 6.09854 6.14018 6.22475 6.35251 6.35424 6.41201 6.52667 6.63845 6.73023 6.77671 6.83025 7.01554 7.21358 7.54059 7.67049 7.90619 8.01715 8.11920 8.56807 9.17340 9.73308 11.21800 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.007425 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.077880 B = 3770.035447 C = 4632.314172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.114 3.886 3 H 0.048 0.952 4 C -0.103 4.103 5 C -0.055 4.055 6 C -0.134 4.134 7 C -0.100 4.100 8 C -0.165 4.165 9 C 0.090 3.910 10 F -0.146 7.146 11 N -0.507 5.507 12 C 0.025 3.975 13 C 0.083 3.917 14 H 0.070 0.930 15 C -0.184 4.184 16 C 0.030 3.970 17 C -0.489 4.489 18 H 0.063 0.937 19 C 0.051 3.949 20 N -0.903 5.903 21 Si 0.886 3.114 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.287 1.287 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.160 0.840 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.015 0.985 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 6.474 -11.409 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.005 3.995 3 H 0.066 0.934 4 C -0.105 4.105 5 C -0.073 4.073 6 C -0.152 4.152 7 C -0.118 4.118 8 C -0.184 4.184 9 C 0.071 3.929 10 F -0.124 7.124 11 N -0.230 5.230 12 C -0.123 4.123 13 C -0.024 4.024 14 H 0.088 0.912 15 C -0.243 4.243 16 C -0.007 4.007 17 C -0.527 4.527 18 H 0.082 0.918 19 C -0.148 4.148 20 N -0.544 5.544 21 Si 0.714 3.286 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.214 1.214 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.177 0.823 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.280 5.942 -11.306 14.232 hybrid contribution 0.176 0.121 -0.127 0.249 sum -6.104 6.062 -11.433 14.308 Atomic orbital electron populations 1.21868 0.93893 1.02763 1.01212 1.20446 0.95019 0.94974 0.89060 0.93408 1.19903 1.01970 0.95105 0.93495 1.21473 0.93378 0.93074 0.99368 1.21325 1.00403 1.00627 0.92873 1.20946 0.99297 0.93232 0.98333 1.20952 1.04278 0.95732 0.97465 1.17598 1.02658 0.77570 0.95108 1.91441 1.91769 1.32141 1.97072 1.62186 1.05492 1.54677 1.00686 1.22409 0.98838 0.96734 0.94327 1.21963 0.86081 0.92742 1.01646 0.91178 1.22505 1.01577 0.99515 1.00694 1.19213 0.95657 0.93674 0.92150 1.21230 1.37750 0.90516 1.03245 0.91849 1.25002 0.95867 0.98750 0.95221 1.69970 1.42942 1.32011 1.09443 0.86636 0.77577 0.85841 0.78521 1.19693 1.21459 1.21361 0.91378 0.92232 0.92854 0.82287 0.85566 0.85719 0.85515 0.92231 0.89910 0.96672 0.92789 0.92650 0.94196 0.96424 0.96140 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.28 37.16 0.31 -1.64 16 2 C 0.11 1.84 2.00 -68.86 -0.14 1.71 16 3 H 0.05 0.80 5.81 -51.93 -0.30 0.50 16 4 C -0.10 -1.69 4.15 -104.55 -0.43 -2.12 16 5 C -0.06 -0.93 8.36 -39.59 -0.33 -1.26 16 6 C -0.13 -1.97 10.04 -39.58 -0.40 -2.37 16 7 C -0.10 -1.28 10.04 -39.60 -0.40 -1.68 16 8 C -0.17 -2.21 10.03 -39.52 -0.40 -2.60 16 9 C 0.09 1.38 7.24 -39.42 -0.29 1.10 16 10 F -0.15 -2.25 16.52 2.25 0.04 -2.21 16 11 N -0.51 -9.30 3.22 -228.29 -0.74 -10.04 16 12 C 0.02 0.42 7.73 60.07 0.46 0.89 16 13 C 0.08 1.69 1.93 -67.71 -0.13 1.56 16 14 H 0.07 1.49 6.55 -51.93 -0.34 1.15 16 15 C -0.18 -3.28 8.41 37.16 0.31 -2.97 16 16 C 0.03 0.74 4.37 -27.89 -0.12 0.62 16 17 C -0.49 -13.05 8.84 -34.44 -0.30 -13.35 16 18 H 0.06 1.63 5.67 -52.49 -0.30 1.34 16 19 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 20 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 0.76 6.83 -51.93 -0.35 0.40 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.16 3.05 5.28 -52.48 -0.28 2.77 16 29 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.06 0.91 6.65 -51.93 -0.35 0.57 16 33 H 0.08 1.61 6.00 -51.93 -0.31 1.29 16 34 H 0.01 0.24 6.86 -51.93 -0.36 -0.12 16 35 H 0.05 0.94 6.80 -51.93 -0.35 0.59 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.66 6.36 -51.93 -0.33 0.33 16 38 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.02 0.54 6.15 -51.93 -0.32 0.22 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -28.72 314.76 -7.87 -36.59 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.68 Total: 1.34 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.95 Total: -20.80 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.00 Total: -36.00 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.72 -7.87 -36.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.629 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds