Wall clock time and date at job start Mon Mar 30 2020 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47232 * 2 1 4 4 C 1.50703 * 109.47251 * 239.99922 * 2 1 3 5 5 C 1.38222 * 120.01184 * 267.53368 * 4 2 1 6 6 C 1.38222 * 120.02677 * 180.02562 * 5 4 2 7 7 C 1.38263 * 120.04918 * 359.97438 * 6 5 4 8 8 C 1.38176 * 120.02596 * 0.02562 * 7 6 5 9 9 C 1.38434 * 120.01458 * 87.55255 * 4 2 1 10 10 F 1.35105 * 120.02212 * 0.02562 * 9 4 2 11 11 N 1.46902 * 109.47129 * 120.00040 * 2 1 3 12 12 C 1.46905 * 110.99810 * 311.92049 * 11 2 1 13 13 C 1.46898 * 111.00137 * 187.97061 * 11 2 1 14 14 H 1.09006 * 109.47126 * 309.27095 * 13 11 2 15 15 C 1.53003 * 109.47426 * 69.26693 * 13 11 2 16 16 C 1.52997 * 109.47340 * 189.27060 * 13 11 2 17 17 C 1.50699 * 109.47128 * 64.99707 * 16 13 11 18 18 H 1.08002 * 120.00267 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99923 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00355 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00035 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47267 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46796 * 120.00426 * 21 19 17 24 24 H 1.48501 * 109.47636 * 240.00364 * 21 19 17 25 25 H 1.08997 * 109.46899 * 186.21401 * 1 2 3 26 26 H 1.08998 * 109.46851 * 306.21064 * 1 2 3 27 27 H 1.08994 * 109.46992 * 66.21188 * 1 2 3 28 28 H 1.08006 * 119.98655 * 359.97438 * 5 4 2 29 29 H 1.07993 * 119.97564 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.98588 * 179.72638 * 7 6 5 31 31 H 1.08008 * 120.01459 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.46662 * 64.90145 * 12 11 2 33 33 H 1.09005 * 109.46816 * 184.89588 * 12 11 2 34 34 H 1.08997 * 109.47070 * 304.89685 * 12 11 2 35 35 H 1.09006 * 109.46734 * 64.33016 * 15 13 11 36 36 H 1.08997 * 109.47579 * 184.32941 * 15 13 11 37 37 H 1.09000 * 109.47014 * 304.33866 * 15 13 11 38 38 H 1.09007 * 109.47284 * 184.99881 * 16 13 11 39 39 H 1.09001 * 109.47099 * 305.00187 * 16 13 11 40 40 H 0.97000 * 120.00460 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.3114 -2.0633 -1.1822 6 6 2.7727 -2.7151 -2.3104 7 6 2.9550 -2.0149 -3.4886 8 6 2.6768 -0.6624 -3.5392 9 6 2.2150 -0.0083 -2.4095 10 9 1.9434 1.3143 -2.4575 11 7 2.0197 -0.6925 1.1994 12 6 1.3313 -0.2096 2.4040 13 6 3.4756 -0.5496 1.3323 14 1 3.9550 -0.8255 0.3930 15 6 3.8168 0.9028 1.6716 16 6 3.9782 -1.4660 2.4497 17 6 3.7526 -2.9040 2.0597 18 1 3.2968 -3.1408 1.1096 19 6 4.1291 -3.9175 2.9153 20 7 4.6846 -3.6293 4.0720 21 14 3.8488 -5.7001 2.4321 22 1 3.2124 -5.7555 1.0916 23 1 5.1513 -6.4124 2.3912 24 1 2.9606 -6.3496 3.4294 25 1 -0.3633 -1.0216 0.1112 26 1 -0.3633 0.6071 0.8292 27 1 -0.3633 0.4145 -0.9403 28 1 2.1697 -2.6112 -0.2622 29 1 2.9900 -3.7723 -2.2719 30 1 3.3197 -2.5243 -4.3683 31 1 2.8189 -0.1157 -4.4598 32 1 0.2741 -0.4690 2.3468 33 1 1.7723 -0.6748 3.2856 34 1 1.4366 0.8730 2.4733 35 1 3.4017 1.1550 2.6475 36 1 4.8996 1.0259 1.6945 37 1 3.3920 1.5621 0.9147 38 1 5.0431 -1.2952 2.6084 39 1 3.4345 -1.2494 3.3693 40 1 4.9491 -4.3424 4.6741 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:41 Heat of formation + Delta-G solvation = -33.709880 kcal Electronic energy + Delta-G solvation = -21095.798059 eV Core-core repulsion = 18017.316877 eV Total energy + Delta-G solvation = -3078.481182 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.84695 -40.67928 -38.86560 -35.40283 -33.91331 -31.81801 -31.31014 -29.48675 -29.21662 -27.16872 -25.18516 -24.20733 -23.25990 -21.69787 -20.10374 -18.61299 -18.21020 -17.63122 -17.09494 -16.63370 -16.48131 -16.40475 -15.45264 -15.29142 -14.88562 -14.69624 -14.10946 -14.06779 -13.90855 -13.78165 -13.42289 -13.28546 -13.08886 -12.95285 -12.70839 -12.63081 -12.43229 -12.27836 -12.22771 -12.10208 -11.74994 -11.54365 -11.04679 -10.90807 -10.44343 -9.73475 -9.51761 -8.94458 -8.05427 -6.09157 0.27935 0.41073 1.43465 1.45167 1.56771 2.50427 2.75237 3.04601 3.30856 3.40927 3.70142 3.99451 4.11393 4.20337 4.28107 4.30639 4.43671 4.46898 4.50776 4.57799 4.59963 4.70759 4.84924 4.89791 4.96899 5.09475 5.14211 5.17531 5.22385 5.24087 5.28977 5.33988 5.49888 5.62724 5.66093 5.76125 5.95499 6.08056 6.33969 6.44208 6.53726 7.05527 7.56390 9.07302 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.007425 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.077880 B = 3770.035447 C = 4632.314172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.116 3.884 3 H 0.045 0.955 4 C -0.117 4.117 5 C -0.077 4.077 6 C -0.141 4.141 7 C -0.090 4.090 8 C -0.158 4.158 9 C 0.077 3.923 10 F -0.148 7.148 11 N -0.519 5.519 12 C 0.029 3.971 13 C 0.097 3.903 14 H 0.059 0.941 15 C -0.176 4.176 16 C 0.037 3.963 17 C -0.491 4.491 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.943 5.943 21 Si 0.950 3.050 22 H -0.256 1.256 23 H -0.287 1.287 24 H -0.287 1.287 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.031 0.969 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.056 0.944 38 H -0.013 1.013 39 H 0.000 1.000 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 6.569 -13.945 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.063 0.937 4 C -0.118 4.118 5 C -0.095 4.095 6 C -0.159 4.159 7 C -0.108 4.108 8 C -0.177 4.177 9 C 0.058 3.942 10 F -0.127 7.127 11 N -0.242 5.242 12 C -0.119 4.119 13 C -0.011 4.011 14 H 0.077 0.923 15 C -0.235 4.235 16 C 0.000 4.000 17 C -0.529 4.529 18 H 0.089 0.911 19 C -0.202 4.202 20 N -0.586 5.586 21 Si 0.776 3.224 22 H -0.180 1.180 23 H -0.214 1.214 24 H -0.214 1.214 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.179 0.821 31 H 0.173 0.827 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.005 0.995 39 H 0.018 0.982 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.133 6.045 -13.858 16.718 hybrid contribution 0.439 0.121 0.618 0.767 sum -6.695 6.166 -13.241 16.067 Atomic orbital electron populations 1.21825 0.92117 1.02770 1.02378 1.20485 0.96398 0.94349 0.87990 0.93706 1.19914 1.02792 0.95076 0.94025 1.21258 0.95597 0.93444 0.99206 1.21529 1.00024 1.01337 0.92998 1.21312 0.97748 0.93039 0.98665 1.21330 1.02517 0.96065 0.97766 1.17752 1.03409 0.77578 0.95499 1.91433 1.91884 1.32260 1.97093 1.62075 1.04262 1.55925 1.01984 1.22362 0.99451 0.97383 0.92709 1.21573 0.87507 0.93039 0.98987 0.92316 1.22396 1.01733 0.98101 1.01267 1.19063 0.93570 0.94319 0.93091 1.21614 1.36577 0.91500 1.03248 0.91092 1.25835 0.95906 1.03185 0.95226 1.70111 1.44537 1.33239 1.10722 0.85610 0.77392 0.80555 0.78809 1.17971 1.21352 1.21382 0.91953 0.90976 0.91713 0.85219 0.84590 0.82096 0.82667 0.90305 0.92911 0.95087 0.92628 0.92662 0.92465 0.99519 0.98159 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.28 71.98 0.60 -2.90 16 2 C 0.12 3.64 2.00 44.17 0.09 3.73 16 3 H 0.05 1.44 5.81 -2.39 -0.01 1.42 16 4 C -0.12 -3.69 4.15 -19.82 -0.08 -3.77 16 5 C -0.08 -2.55 8.36 22.26 0.19 -2.37 16 6 C -0.14 -3.87 10.04 22.27 0.22 -3.65 16 7 C -0.09 -1.99 10.04 22.26 0.22 -1.77 16 8 C -0.16 -3.69 10.03 22.31 0.22 -3.46 16 9 C 0.08 2.20 7.24 22.37 0.16 2.36 16 10 F -0.15 -4.25 16.52 44.97 0.74 -3.51 16 11 N -0.52 -19.03 3.22 -876.17 -2.82 -21.86 16 12 C 0.03 0.97 7.73 127.69 0.99 1.96 16 13 C 0.10 3.99 1.93 44.92 0.09 4.08 16 14 H 0.06 2.54 6.55 -2.38 -0.02 2.52 16 15 C -0.18 -6.23 8.41 71.98 0.61 -5.63 16 16 C 0.04 1.89 4.37 29.85 0.13 2.02 16 17 C -0.49 -26.83 8.84 25.60 0.23 -26.61 16 18 H 0.07 3.72 5.67 -2.91 -0.02 3.70 16 19 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 20 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 21 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.68 6.83 -2.39 -0.02 1.66 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.13 5.05 5.28 -2.91 -0.02 5.04 16 29 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 30 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.08 2.34 6.65 -2.39 -0.02 2.32 16 33 H 0.05 2.11 6.00 -2.38 -0.01 2.09 16 34 H 0.03 0.94 6.86 -2.39 -0.02 0.92 16 35 H 0.05 1.93 6.80 -2.38 -0.02 1.91 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.82 6.36 -2.39 -0.02 1.81 16 38 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 39 H 0.00 0.01 6.15 -2.39 -0.01 0.00 16 40 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -62.90 314.76 5.38 -57.52 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.03 Total: 14.57 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 4.12 Total: -35.88 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -2.54 Total: -79.02 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.74 Total: -3.51 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.90 5.38 -57.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.808 kcal (2) G-P(sol) polarization free energy of solvation -62.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds