Wall clock time and date at job start Mon Mar 30 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46538 * 2 1 4 4 C 1.52994 * 109.47103 * 119.99963 * 2 1 3 5 5 C 1.50699 * 109.47352 * 183.06549 * 4 2 1 6 6 H 1.08003 * 119.99566 * 5.04043 * 5 4 2 7 7 C 1.37875 * 120.00518 * 185.04288 * 5 4 2 8 8 N 1.31513 * 119.99989 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99622 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47161 * 90.00494 * 9 7 5 11 11 H 1.48500 * 109.46928 * 210.00205 * 9 7 5 12 12 H 1.48495 * 109.47242 * 329.99773 * 9 7 5 13 13 N 1.46901 * 109.46974 * 240.00091 * 2 1 3 14 14 C 1.46895 * 111.00046 * 72.90502 * 13 2 1 15 15 C 1.46897 * 110.99848 * 308.94781 * 13 2 1 16 16 H 1.08994 * 109.47353 * 329.68588 * 15 13 2 17 17 C 1.52999 * 109.47005 * 89.68722 * 15 13 2 18 18 C 1.50699 * 109.46989 * 209.68304 * 15 13 2 19 19 C 1.38218 * 120.01703 * 340.97745 * 18 15 13 20 20 C 1.38224 * 120.02739 * 179.71963 * 19 18 15 21 21 C 1.38269 * 120.05055 * 0.55497 * 20 19 18 22 22 C 1.38172 * 120.02427 * 359.72059 * 21 20 19 23 23 C 1.38444 * 120.00939 * 161.25049 * 18 15 13 24 24 F 1.35096 * 120.02830 * 0.02793 * 23 18 15 25 25 H 1.09003 * 109.47358 * 60.00183 * 1 2 3 26 26 H 1.09005 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47420 * 299.99672 * 1 2 3 28 28 H 1.09008 * 109.47106 * 303.06347 * 4 2 1 29 29 H 1.08993 * 109.47686 * 63.06446 * 4 2 1 30 30 H 0.97001 * 119.99571 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.47549 * 302.01438 * 14 13 2 32 32 H 1.09002 * 109.47016 * 62.01802 * 14 13 2 33 33 H 1.09004 * 109.47231 * 182.00974 * 14 13 2 34 34 H 1.09000 * 109.47557 * 179.97438 * 17 15 13 35 35 H 1.09002 * 109.47126 * 300.00272 * 17 15 13 36 36 H 1.09003 * 109.47408 * 59.99685 * 17 15 13 37 37 H 1.07998 * 119.98443 * 359.97438 * 19 18 15 38 38 H 1.08002 * 119.96936 * 180.27639 * 20 19 18 39 39 H 1.07998 * 119.98230 * 179.74509 * 21 20 19 40 40 H 1.08000 * 120.01372 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5450 -0.6558 1.2878 6 1 4.0798 -0.0818 0.5455 7 6 4.2394 -1.3286 2.2707 8 7 5.5529 -1.2719 2.3040 9 14 3.3144 -2.3208 3.5550 10 1 3.1392 -3.7141 3.0724 11 1 4.0862 -2.3298 4.8237 12 1 1.9828 -1.7070 3.7901 13 7 2.0196 -0.6925 -1.1995 14 6 1.8150 0.1274 -2.4010 15 6 1.3823 -2.0080 -1.3448 16 1 1.1405 -2.4055 -0.3592 17 6 0.0992 -1.8651 -2.1659 18 6 2.3265 -2.9486 -2.0482 19 6 3.3837 -2.4458 -2.7830 20 6 4.2533 -3.3085 -3.4234 21 6 4.0601 -4.6750 -3.3392 22 6 3.0007 -5.1799 -2.6099 23 6 2.1321 -4.3167 -1.9631 24 9 1.0956 -4.8092 -1.2503 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6324 -0.2400 2.1384 29 1 1.7222 -1.7635 1.2223 30 1 6.0414 -1.7449 2.9958 31 1 0.7556 0.3614 -2.5052 32 1 2.3843 1.0525 -2.3109 33 1 2.1535 -0.4234 -3.2787 34 1 -0.3735 -2.8412 -2.2742 35 1 -0.5837 -1.1846 -1.6573 36 1 0.3410 -1.4675 -3.1516 37 1 3.5327 -1.3784 -2.8534 38 1 5.0816 -2.9146 -3.9936 39 1 4.7378 -5.3480 -3.8434 40 1 2.8502 -6.2473 -2.5440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:46 Heat of formation + Delta-G solvation = -2.076253 kcal Electronic energy + Delta-G solvation = -21257.453027 eV Core-core repulsion = 18180.343582 eV Total energy + Delta-G solvation = -3077.109445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.55013 -39.59084 -37.78411 -33.44411 -32.03215 -30.53569 -30.13926 -28.92029 -27.71109 -25.88757 -22.99310 -22.53087 -22.18335 -20.69576 -18.52821 -17.34087 -16.54828 -16.31096 -15.83946 -15.24651 -14.96589 -14.61534 -14.46493 -13.91989 -13.74943 -13.03198 -12.89263 -12.77573 -12.51679 -12.34157 -12.19046 -11.83290 -11.77558 -11.49900 -11.40325 -11.36410 -11.11141 -10.75993 -10.68331 -10.30700 -9.91050 -9.70520 -9.51814 -9.02031 -8.55189 -8.38578 -8.27052 -7.59362 -5.88210 -3.81481 1.51066 1.59883 3.38782 3.45886 3.48006 3.93871 4.38751 4.57435 4.64475 4.96616 5.10099 5.26754 5.38101 5.46043 5.52177 5.54488 5.57362 5.63658 5.71793 5.79368 5.83411 5.86073 5.95285 6.11088 6.17773 6.22211 6.31214 6.39697 6.43915 6.48161 6.52885 6.72517 6.78253 6.80480 7.16674 7.25140 7.29996 7.73563 7.80566 7.97708 8.73781 9.23102 9.75427 11.25876 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.008703 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.832823 B = 3216.452578 C = 3884.949130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.096 3.904 3 H 0.078 0.922 4 C -0.007 4.007 5 C -0.487 4.487 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.907 5.907 9 Si 0.868 3.132 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.504 5.504 14 C 0.013 3.987 15 C 0.120 3.880 16 H 0.096 0.904 17 C -0.190 4.190 18 C -0.086 4.086 19 C -0.066 4.066 20 C -0.134 4.134 21 C -0.104 4.104 22 C -0.160 4.160 23 C 0.093 3.907 24 F -0.144 7.144 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.017 0.983 29 H 0.011 0.989 30 H 0.259 0.741 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -2.957 -12.353 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.012 4.012 3 H 0.096 0.904 4 C -0.044 4.044 5 C -0.525 4.525 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.547 5.547 9 Si 0.696 3.304 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.226 5.226 14 C -0.135 4.135 15 C 0.011 3.989 16 H 0.114 0.886 17 C -0.248 4.248 18 C -0.087 4.087 19 C -0.084 4.084 20 C -0.152 4.152 21 C -0.122 4.122 22 C -0.179 4.179 23 C 0.073 3.927 24 F -0.122 7.122 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.162 0.838 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.799 -3.093 -12.156 14.770 hybrid contribution -1.307 -0.738 0.898 1.749 sum -9.106 -3.831 -11.258 14.978 Atomic orbital electron populations 1.22835 0.99639 1.01599 1.00953 1.21714 0.89953 0.98419 0.91099 0.90421 1.19692 0.98199 0.94842 0.91671 1.20975 0.88953 1.30158 1.12392 0.90394 1.24966 0.94622 0.96478 0.97497 1.69903 1.06036 1.44161 1.34632 0.86967 0.80384 0.81251 0.81788 1.20533 1.21618 1.19353 1.62140 1.56851 1.01493 1.02083 1.22628 0.99077 0.98092 0.93740 1.20410 0.89739 0.90054 0.98665 0.88633 1.22853 0.98410 1.02506 1.01036 1.19894 0.98447 0.91479 0.98896 1.21172 0.92242 1.01271 0.93677 1.21219 0.99709 0.93340 1.00925 1.20884 0.96891 0.95601 0.98800 1.20974 0.96613 0.99509 1.00825 1.17562 0.87483 0.91789 0.95856 1.91446 1.56168 1.88273 1.76343 0.93370 0.92246 0.92590 0.96500 0.97065 0.93137 0.95678 0.91656 0.91700 0.92666 0.90661 0.92139 0.83762 0.85815 0.85759 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 7.36 37.16 0.27 -2.72 16 2 C 0.10 1.84 2.24 -67.72 -0.15 1.69 16 3 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 4 C -0.01 -0.16 3.47 -27.89 -0.10 -0.25 16 5 C -0.49 -13.77 9.34 -34.44 -0.32 -14.09 16 6 H 0.08 2.39 7.99 -52.48 -0.42 1.97 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.49 13.96 55.43 0.77 -27.71 16 9 Si 0.87 22.41 27.37 -169.99 -4.65 17.76 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.63 6.69 56.52 0.38 -6.26 16 13 N -0.50 -9.12 3.52 -228.31 -0.80 -9.93 16 14 C 0.01 0.18 7.23 60.06 0.43 0.62 16 15 C 0.12 2.10 1.60 -68.87 -0.11 1.99 16 16 H 0.10 1.91 5.26 -51.93 -0.27 1.64 16 17 C -0.19 -2.68 7.46 37.16 0.28 -2.40 16 18 C -0.09 -1.51 5.10 -104.55 -0.53 -2.04 16 19 C -0.07 -1.08 8.58 -39.59 -0.34 -1.42 16 20 C -0.13 -1.93 10.04 -39.58 -0.40 -2.33 16 21 C -0.10 -1.41 10.04 -39.59 -0.40 -1.81 16 22 C -0.16 -2.39 10.03 -39.51 -0.40 -2.78 16 23 C 0.09 1.60 7.23 -39.41 -0.29 1.31 16 24 F -0.14 -2.54 16.65 2.25 0.04 -2.50 16 25 H 0.05 0.66 6.09 -51.93 -0.32 0.34 16 26 H 0.06 0.93 5.41 -51.93 -0.28 0.65 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.02 0.40 7.55 -51.92 -0.39 0.01 16 29 H 0.01 0.27 5.49 -51.93 -0.29 -0.01 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.02 0.33 5.32 -51.93 -0.28 0.05 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.06 0.85 5.60 -51.93 -0.29 0.56 16 34 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.07 1.01 4.38 -51.93 -0.23 0.78 16 36 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 37 H 0.14 2.34 5.16 -52.49 -0.27 2.06 16 38 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 307.13 15.07 4.63 4.63 Total: -1.00 -31.37 307.13 -7.63 -39.00 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.47 Total: 1.20 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.14 Total: -22.45 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.03 Total: -37.64 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.65 Total: 17.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.37 -7.63 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.924 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds