Wall clock time and date at job start Mon Mar 30 2020 06:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46538 * 2 1 4 4 C 1.52994 * 109.47103 * 119.99963 * 2 1 3 5 5 C 1.50699 * 109.47352 * 183.06549 * 4 2 1 6 6 H 1.08003 * 119.99566 * 5.04043 * 5 4 2 7 7 C 1.37875 * 120.00518 * 185.04288 * 5 4 2 8 8 N 1.31513 * 119.99989 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99622 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47161 * 90.00494 * 9 7 5 11 11 H 1.48500 * 109.46928 * 210.00205 * 9 7 5 12 12 H 1.48495 * 109.47242 * 329.99773 * 9 7 5 13 13 N 1.46901 * 109.46974 * 240.00091 * 2 1 3 14 14 C 1.46895 * 111.00046 * 72.90502 * 13 2 1 15 15 C 1.46897 * 110.99848 * 308.94781 * 13 2 1 16 16 H 1.08994 * 109.47353 * 329.68588 * 15 13 2 17 17 C 1.52999 * 109.47005 * 89.68722 * 15 13 2 18 18 C 1.50699 * 109.46989 * 209.68304 * 15 13 2 19 19 C 1.38218 * 120.01703 * 340.97745 * 18 15 13 20 20 C 1.38224 * 120.02739 * 179.71963 * 19 18 15 21 21 C 1.38269 * 120.05055 * 0.55497 * 20 19 18 22 22 C 1.38172 * 120.02427 * 359.72059 * 21 20 19 23 23 C 1.38444 * 120.00939 * 161.25049 * 18 15 13 24 24 F 1.35096 * 120.02830 * 0.02793 * 23 18 15 25 25 H 1.09003 * 109.47358 * 60.00183 * 1 2 3 26 26 H 1.09005 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47420 * 299.99672 * 1 2 3 28 28 H 1.09008 * 109.47106 * 303.06347 * 4 2 1 29 29 H 1.08993 * 109.47686 * 63.06446 * 4 2 1 30 30 H 0.97001 * 119.99571 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.47549 * 302.01438 * 14 13 2 32 32 H 1.09002 * 109.47016 * 62.01802 * 14 13 2 33 33 H 1.09004 * 109.47231 * 182.00974 * 14 13 2 34 34 H 1.09000 * 109.47557 * 179.97438 * 17 15 13 35 35 H 1.09002 * 109.47126 * 300.00272 * 17 15 13 36 36 H 1.09003 * 109.47408 * 59.99685 * 17 15 13 37 37 H 1.07998 * 119.98443 * 359.97438 * 19 18 15 38 38 H 1.08002 * 119.96936 * 180.27639 * 20 19 18 39 39 H 1.07998 * 119.98230 * 179.74509 * 21 20 19 40 40 H 1.08000 * 120.01372 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5450 -0.6558 1.2878 6 1 4.0798 -0.0818 0.5455 7 6 4.2394 -1.3286 2.2707 8 7 5.5529 -1.2719 2.3040 9 14 3.3144 -2.3208 3.5550 10 1 3.1392 -3.7141 3.0724 11 1 4.0862 -2.3298 4.8237 12 1 1.9828 -1.7070 3.7901 13 7 2.0196 -0.6925 -1.1995 14 6 1.8150 0.1274 -2.4010 15 6 1.3823 -2.0080 -1.3448 16 1 1.1405 -2.4055 -0.3592 17 6 0.0992 -1.8651 -2.1659 18 6 2.3265 -2.9486 -2.0482 19 6 3.3837 -2.4458 -2.7830 20 6 4.2533 -3.3085 -3.4234 21 6 4.0601 -4.6750 -3.3392 22 6 3.0007 -5.1799 -2.6099 23 6 2.1321 -4.3167 -1.9631 24 9 1.0956 -4.8092 -1.2503 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6324 -0.2400 2.1384 29 1 1.7222 -1.7635 1.2223 30 1 6.0414 -1.7449 2.9958 31 1 0.7556 0.3614 -2.5052 32 1 2.3843 1.0525 -2.3109 33 1 2.1535 -0.4234 -3.2787 34 1 -0.3735 -2.8412 -2.2742 35 1 -0.5837 -1.1846 -1.6573 36 1 0.3410 -1.4675 -3.1516 37 1 3.5327 -1.3784 -2.8534 38 1 5.0816 -2.9146 -3.9936 39 1 4.7378 -5.3480 -3.8434 40 1 2.8502 -6.2473 -2.5440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:45 Heat of formation + Delta-G solvation = -20.500422 kcal Electronic energy + Delta-G solvation = -21258.251959 eV Core-core repulsion = 18180.343582 eV Total energy + Delta-G solvation = -3077.908377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.85135 -40.87749 -39.04408 -35.26249 -33.80813 -31.91985 -31.41881 -30.15245 -29.34890 -27.21589 -24.50517 -23.94280 -23.57731 -22.10271 -19.97089 -18.81351 -18.52677 -17.61718 -17.11034 -16.54300 -16.39788 -16.17691 -15.75451 -15.50733 -15.00337 -14.64975 -14.28500 -14.21696 -13.97668 -13.83727 -13.58654 -13.34030 -13.06887 -12.88762 -12.78903 -12.61011 -12.45634 -12.40292 -11.99643 -11.92272 -11.71217 -11.39611 -11.15049 -11.07607 -10.66472 -9.74801 -9.49473 -8.90421 -8.17582 -6.13930 0.30100 0.41578 1.32452 1.33565 1.43318 2.39543 2.74731 3.05271 3.21839 3.43329 3.74980 3.94810 4.08672 4.17352 4.27626 4.30679 4.40884 4.44289 4.48728 4.57742 4.63338 4.68886 4.75615 4.88484 4.97033 5.03617 5.06759 5.13988 5.17969 5.22003 5.25094 5.27250 5.36183 5.52783 5.55796 5.61802 5.75770 6.07781 6.37486 6.42220 6.54893 6.92697 7.45794 8.99712 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.008703 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.832823 B = 3216.452578 C = 3884.949130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.099 3.901 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.479 4.479 6 H 0.041 0.959 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.930 3.070 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.249 1.249 13 N -0.529 5.529 14 C 0.016 3.984 15 C 0.123 3.877 16 H 0.063 0.937 17 C -0.179 4.179 18 C -0.108 4.108 19 C -0.085 4.085 20 C -0.135 4.135 21 C -0.099 4.099 22 C -0.162 4.162 23 C 0.064 3.936 24 F -0.153 7.153 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.006 0.994 30 H 0.259 0.741 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 -3.542 -13.463 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.009 4.009 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.517 4.517 6 H 0.059 0.941 7 C -0.192 4.192 8 N -0.597 5.597 9 Si 0.755 3.245 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.172 1.172 13 N -0.252 5.252 14 C -0.131 4.131 15 C 0.015 3.985 16 H 0.081 0.919 17 C -0.237 4.237 18 C -0.110 4.110 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.117 4.117 22 C -0.181 4.181 23 C 0.044 3.956 24 F -0.132 7.132 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.179 0.821 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.173 -3.665 -13.276 16.548 hybrid contribution -0.789 -0.537 1.150 1.495 sum -9.962 -4.203 -12.126 16.246 Atomic orbital electron populations 1.22700 0.96507 1.02110 1.02605 1.21507 0.92419 0.97187 0.89831 0.91191 1.19641 0.95007 0.95208 0.94347 1.21218 0.91413 1.28409 1.10683 0.94094 1.25787 0.95366 0.98050 1.00012 1.70055 1.07787 1.45924 1.35930 0.85964 0.79972 0.79439 0.79095 1.20707 1.21179 1.17231 1.62009 1.57955 1.02278 1.02955 1.22648 1.00366 0.97583 0.92551 1.20305 0.91201 0.89495 0.97546 0.91896 1.22748 0.96822 1.02897 1.01203 1.20069 0.99219 0.91914 0.99780 1.21291 0.92792 1.01591 0.94642 1.21598 0.99697 0.93751 1.00263 1.21329 0.96649 0.95829 0.97861 1.21345 0.96189 1.00504 1.00033 1.17898 0.88299 0.92263 0.97100 1.91411 1.56683 1.88322 1.76761 0.90776 0.92244 0.91907 0.96322 0.97577 0.93200 0.93667 0.91840 0.90530 0.92653 0.89671 0.90756 0.84156 0.83279 0.82079 0.83231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.26 7.36 71.98 0.53 -4.73 16 2 C 0.10 3.73 2.24 44.91 0.10 3.83 16 3 H 0.07 2.71 8.03 -2.38 -0.02 2.69 16 4 C 0.00 -0.21 3.47 29.85 0.10 -0.11 16 5 C -0.48 -27.78 9.34 25.60 0.24 -27.54 16 6 H 0.04 2.62 7.99 -2.91 -0.02 2.60 16 7 C 0.00 0.17 5.47 84.65 0.46 0.63 16 8 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 9 Si 0.93 46.71 27.37 68.60 1.88 48.59 16 10 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.25 -11.57 6.69 99.48 0.67 -10.90 16 13 N -0.53 -19.02 3.52 -876.23 -3.08 -22.10 16 14 C 0.02 0.43 7.23 127.69 0.92 1.36 16 15 C 0.12 4.27 1.60 44.17 0.07 4.34 16 16 H 0.06 2.56 5.26 -2.39 -0.01 2.54 16 17 C -0.18 -4.74 7.46 71.98 0.54 -4.20 16 18 C -0.11 -3.80 5.10 -19.82 -0.10 -3.91 16 19 C -0.09 -2.77 8.58 22.26 0.19 -2.58 16 20 C -0.14 -3.66 10.04 22.27 0.22 -3.44 16 21 C -0.10 -2.44 10.04 22.26 0.22 -2.22 16 22 C -0.16 -4.55 10.03 22.31 0.22 -4.33 16 23 C 0.06 2.18 7.23 22.38 0.16 2.34 16 24 F -0.15 -5.42 16.65 44.97 0.75 -4.68 16 25 H 0.07 1.78 6.09 -2.39 -0.01 1.76 16 26 H 0.06 1.74 5.41 -2.38 -0.01 1.73 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.02 0.87 7.55 -2.38 -0.02 0.86 16 29 H 0.01 0.30 5.49 -2.39 -0.01 0.28 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.04 1.05 5.32 -2.39 -0.01 1.04 16 32 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 33 H 0.08 1.90 5.60 -2.38 -0.01 1.89 16 34 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.08 2.06 4.38 -2.39 -0.01 2.05 16 36 H 0.07 1.75 6.40 -2.39 -0.02 1.74 16 37 H 0.14 4.54 5.16 -2.91 -0.02 4.53 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 39 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -69.56 307.13 4.73 -64.82 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.00 Total: 15.21 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 3.89 Total: -40.54 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.78 Total: -83.40 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.75 Total: -4.68 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.88 Total: 48.59 kcal Total: -69.56 4.73 -64.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.324 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds