Wall clock time and date at job start Mon Mar 30 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47210 * 270.00132 * 3 2 1 5 5 H 1.48492 * 109.47048 * 30.00831 * 3 2 1 6 6 H 1.48505 * 109.46854 * 150.00121 * 3 2 1 7 7 C 1.37879 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00381 * 173.05776 * 7 2 1 9 9 C 1.50703 * 119.99724 * 353.06120 * 7 2 1 10 10 C 1.52991 * 115.55055 * 84.96225 * 9 7 2 11 11 N 1.46906 * 109.47064 * 65.16905 * 10 9 7 12 12 C 1.46901 * 111.00161 * 174.70084 * 11 10 9 13 13 C 1.52995 * 109.47330 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.85106 * 59.04381 * 13 12 11 15 15 C 1.54169 * 109.85927 * 180.02562 * 13 12 11 16 16 C 1.54997 * 104.27269 * 121.23734 * 15 13 12 17 17 C 1.53903 * 101.91693 * 19.79184 * 16 15 13 18 18 C 1.52645 * 115.55426 * 195.00568 * 17 16 15 19 19 C 1.53986 * 86.73911 * 217.57869 * 18 17 16 20 20 C 1.52651 * 115.54436 * 93.99073 * 17 16 15 21 21 O 1.43102 * 105.11394 * 324.51031 * 17 16 15 22 22 C 1.53002 * 117.49728 * 230.63547 * 9 7 2 23 23 C 1.53005 * 117.49497 * 299.29432 * 9 7 2 24 24 H 0.96996 * 120.00571 * 5.04028 * 1 2 3 25 25 H 1.08999 * 109.47629 * 305.16881 * 10 9 7 26 26 H 1.09001 * 109.47618 * 185.16623 * 10 9 7 27 27 H 1.00898 * 110.99792 * 298.65341 * 11 10 9 28 28 H 1.08999 * 109.47050 * 299.99924 * 12 11 10 29 29 H 1.09002 * 109.47089 * 59.99542 * 12 11 10 30 30 H 1.08999 * 110.46903 * 239.93955 * 15 13 12 31 31 H 1.09001 * 110.47200 * 2.40623 * 15 13 12 32 32 H 1.08997 * 110.94147 * 137.94480 * 16 15 13 33 33 H 1.08999 * 110.94215 * 261.63512 * 16 15 13 34 34 H 1.08999 * 113.66643 * 332.04533 * 18 17 16 35 35 H 1.09004 * 113.66883 * 103.11454 * 18 17 16 36 36 H 1.08995 * 113.58377 * 269.98414 * 19 18 17 37 37 H 1.08998 * 113.58280 * 139.18561 * 19 18 17 38 38 H 1.08997 * 113.66711 * 256.89085 * 20 17 16 39 39 H 1.09003 * 113.66746 * 27.96817 * 20 17 16 40 40 H 1.08999 * 117.49622 * 215.00282 * 22 9 7 41 41 H 1.09002 * 117.49774 * 0.02562 * 22 9 7 42 42 H 1.08994 * 117.49866 * 359.97438 * 23 9 7 43 43 H 1.09004 * 117.49598 * 145.00301 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0786 -1.1974 -0.1136 9 6 1.2593 -2.4945 0.1566 10 6 0.6846 -3.0855 -1.1322 11 7 1.7839 -3.4607 -2.0317 12 6 1.2753 -4.1470 -3.2268 13 6 2.4467 -4.5218 -4.1369 14 1 3.1398 -5.1697 -3.6003 15 6 1.9226 -5.2424 -5.3950 16 6 2.4158 -4.3631 -6.5723 17 6 3.5589 -3.5674 -5.9176 18 6 4.0409 -2.3459 -6.6959 19 6 5.4601 -2.7171 -6.2277 20 6 4.9543 -4.1642 -6.0813 21 8 3.1268 -3.3305 -4.5741 22 6 1.7625 -3.4730 1.2196 23 6 0.4609 -2.6998 1.4455 24 1 -0.4851 0.8367 -0.0738 25 1 0.0519 -2.3448 -1.6212 26 1 0.0922 -3.9690 -0.8943 27 1 2.3351 -2.6544 -2.2848 28 1 0.7440 -5.0507 -2.9284 29 1 0.5948 -3.4859 -3.7634 30 1 2.3457 -6.2445 -5.4643 31 1 0.8337 -5.2894 -5.3817 32 1 2.7890 -4.9801 -7.3897 33 1 1.6257 -3.6967 -6.9185 34 1 3.8995 -2.4299 -7.7734 35 1 3.6804 -1.3997 -6.2924 36 1 5.7416 -2.2557 -5.2811 37 1 6.2196 -2.5967 -7.0002 38 1 5.3223 -4.6681 -5.1876 39 1 5.0712 -4.7622 -6.9851 40 1 1.6841 -4.5379 1.0007 41 1 2.6323 -3.1761 1.8056 42 1 0.4749 -1.8945 2.1799 43 1 -0.4739 -3.2561 1.3752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711401383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:11 Heat of formation + Delta-G solvation = -5.748206 kcal Electronic energy + Delta-G solvation = -20736.451425 eV Core-core repulsion = 17782.643058 eV Total energy + Delta-G solvation = -2953.808368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49004 -37.10172 -36.29997 -33.79478 -32.10791 -31.82852 -28.84433 -25.98557 -25.62184 -24.83486 -23.03865 -21.71646 -20.98052 -20.80712 -19.18391 -18.92599 -16.27677 -15.94933 -15.77812 -15.44334 -14.93099 -14.53772 -14.24726 -13.82677 -13.55222 -13.42514 -12.82574 -12.68517 -12.48917 -12.27865 -11.79176 -11.61322 -11.33650 -11.17029 -11.13428 -11.01334 -10.89394 -10.78851 -10.65803 -10.35634 -10.34500 -10.10457 -10.04670 -9.39276 -9.25880 -8.66719 -8.34438 -7.98454 -7.38022 -5.95082 -4.00224 3.33828 3.40554 3.45096 3.75047 4.45025 4.46900 4.51142 4.67990 4.76423 4.83323 4.99922 5.14092 5.23116 5.33685 5.43046 5.55682 5.57922 5.61215 5.69038 5.70524 5.77389 5.85954 5.88194 5.97947 6.03682 6.06462 6.25411 6.29289 6.30871 6.39553 6.55741 6.66352 6.91665 6.92969 7.00445 7.23214 7.24160 7.60554 7.64586 7.96331 8.10197 8.44562 8.58683 9.02793 9.64926 11.13039 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.005368 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.049292 B = 5214.630633 C = 6131.849555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.070 3.930 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.106 3.894 11 N -0.679 5.679 12 C 0.061 3.939 13 C 0.082 3.918 14 H 0.075 0.925 15 C -0.150 4.150 16 C -0.139 4.139 17 C 0.083 3.917 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.155 4.155 21 O -0.338 6.338 22 C -0.200 4.200 23 C -0.163 4.163 24 H 0.258 0.742 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.355 0.645 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 -9.102 -14.008 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.050 3.950 10 C -0.023 4.023 11 N -0.311 5.311 12 C -0.069 4.069 13 C 0.025 3.975 14 H 0.093 0.907 15 C -0.188 4.188 16 C -0.176 4.176 17 C 0.043 3.957 18 C -0.168 4.168 19 C -0.173 4.173 20 C -0.193 4.193 21 O -0.257 6.257 22 C -0.238 4.238 23 C -0.201 4.201 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.175 0.825 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.093 -9.356 -13.463 17.168 hybrid contribution -0.160 1.457 -0.552 1.567 sum 4.933 -7.899 -14.015 16.827 Atomic orbital electron populations 1.69990 1.05867 1.26484 1.49576 1.24991 0.94758 0.98787 0.94738 0.86679 0.80051 0.83754 0.78093 1.20738 1.21337 1.19808 1.20467 0.93141 0.88828 1.50357 0.92200 1.18733 0.97259 0.93357 0.85639 1.21425 0.91095 0.95762 0.94035 1.60454 1.23714 1.33008 1.13924 1.22094 0.94339 0.99042 0.91437 1.22891 0.94158 0.86513 0.93978 0.90742 1.22971 1.02003 0.99360 0.94462 1.22891 0.98401 0.98513 0.97842 1.22587 0.92803 0.96148 0.84209 1.22873 0.96275 0.98344 0.99315 1.22841 0.96270 0.96309 1.01838 1.23285 0.96524 0.97199 1.02307 1.88769 1.73967 1.36311 1.26637 1.22863 0.97572 0.95817 1.07509 1.22532 0.92418 1.01333 1.03810 0.93210 0.94772 0.94693 0.82548 0.91018 0.95577 0.90830 0.90491 0.90530 0.90544 0.89203 0.90286 0.89571 0.91629 0.90757 0.89687 0.91745 0.90940 0.90370 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 12.95 55.43 0.72 -24.72 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.49 -13.60 8.33 -34.44 -0.29 -13.89 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.05 1.29 1.56 -155.66 -0.24 1.05 16 10 C 0.11 2.47 5.54 -3.83 -0.02 2.45 16 11 N -0.68 -14.22 6.47 -113.78 -0.74 -14.96 16 12 C 0.06 1.04 5.18 -3.83 -0.02 1.02 16 13 C 0.08 1.21 3.71 -26.12 -0.10 1.11 16 14 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.15 -1.68 6.65 -25.07 -0.17 -1.85 16 16 C -0.14 -1.48 6.48 -25.21 -0.16 -1.64 16 17 C 0.08 1.04 1.12 -90.53 -0.10 0.94 16 18 C -0.13 -1.48 7.64 -26.40 -0.20 -1.68 16 19 C -0.14 -1.47 8.09 -25.72 -0.21 -1.68 16 20 C -0.16 -1.68 7.63 -26.39 -0.20 -1.88 16 21 O -0.34 -5.53 10.42 -35.23 -0.37 -5.90 16 22 C -0.20 -4.64 9.96 -26.69 -0.27 -4.91 16 23 C -0.16 -3.99 9.46 -26.69 -0.25 -4.24 16 24 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.35 8.12 7.78 -39.29 -0.31 7.81 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16 32 H 0.08 0.66 7.96 -51.93 -0.41 0.24 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.74 8.01 -51.93 -0.42 0.33 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -29.17 345.24 -10.37 -39.54 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.84 Total: 7.61 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -2.32 Total: -23.35 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.02 Total: -39.68 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.37 Total: -5.90 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.17 -10.37 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711401383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.795 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds