Wall clock time and date at job start Mon Mar 30 2020 06:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47210 * 270.00132 * 3 2 1 5 5 H 1.48492 * 109.47048 * 30.00831 * 3 2 1 6 6 H 1.48505 * 109.46854 * 150.00121 * 3 2 1 7 7 C 1.37879 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00381 * 173.05776 * 7 2 1 9 9 C 1.50703 * 119.99724 * 353.06120 * 7 2 1 10 10 C 1.52991 * 115.55055 * 84.96225 * 9 7 2 11 11 N 1.46906 * 109.47064 * 65.16905 * 10 9 7 12 12 C 1.46901 * 111.00161 * 174.70084 * 11 10 9 13 13 C 1.52995 * 109.47330 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.85106 * 59.04381 * 13 12 11 15 15 C 1.54169 * 109.85927 * 180.02562 * 13 12 11 16 16 C 1.54997 * 104.27269 * 121.23734 * 15 13 12 17 17 C 1.53903 * 101.91693 * 19.79184 * 16 15 13 18 18 C 1.52645 * 115.55426 * 195.00568 * 17 16 15 19 19 C 1.53986 * 86.73911 * 217.57869 * 18 17 16 20 20 C 1.52651 * 115.54436 * 93.99073 * 17 16 15 21 21 O 1.43102 * 105.11394 * 324.51031 * 17 16 15 22 22 C 1.53002 * 117.49728 * 230.63547 * 9 7 2 23 23 C 1.53005 * 117.49497 * 299.29432 * 9 7 2 24 24 H 0.96996 * 120.00571 * 5.04028 * 1 2 3 25 25 H 1.08999 * 109.47629 * 305.16881 * 10 9 7 26 26 H 1.09001 * 109.47618 * 185.16623 * 10 9 7 27 27 H 1.00898 * 110.99792 * 298.65341 * 11 10 9 28 28 H 1.08999 * 109.47050 * 299.99924 * 12 11 10 29 29 H 1.09002 * 109.47089 * 59.99542 * 12 11 10 30 30 H 1.08999 * 110.46903 * 239.93955 * 15 13 12 31 31 H 1.09001 * 110.47200 * 2.40623 * 15 13 12 32 32 H 1.08997 * 110.94147 * 137.94480 * 16 15 13 33 33 H 1.08999 * 110.94215 * 261.63512 * 16 15 13 34 34 H 1.08999 * 113.66643 * 332.04533 * 18 17 16 35 35 H 1.09004 * 113.66883 * 103.11454 * 18 17 16 36 36 H 1.08995 * 113.58377 * 269.98414 * 19 18 17 37 37 H 1.08998 * 113.58280 * 139.18561 * 19 18 17 38 38 H 1.08997 * 113.66711 * 256.89085 * 20 17 16 39 39 H 1.09003 * 113.66746 * 27.96817 * 20 17 16 40 40 H 1.08999 * 117.49622 * 215.00282 * 22 9 7 41 41 H 1.09002 * 117.49774 * 0.02562 * 22 9 7 42 42 H 1.08994 * 117.49866 * 359.97438 * 23 9 7 43 43 H 1.09004 * 117.49598 * 145.00301 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0786 -1.1974 -0.1136 9 6 1.2593 -2.4945 0.1566 10 6 0.6846 -3.0855 -1.1322 11 7 1.7839 -3.4607 -2.0317 12 6 1.2753 -4.1470 -3.2268 13 6 2.4467 -4.5218 -4.1369 14 1 3.1398 -5.1697 -3.6003 15 6 1.9226 -5.2424 -5.3950 16 6 2.4158 -4.3631 -6.5723 17 6 3.5589 -3.5674 -5.9176 18 6 4.0409 -2.3459 -6.6959 19 6 5.4601 -2.7171 -6.2277 20 6 4.9543 -4.1642 -6.0813 21 8 3.1268 -3.3305 -4.5741 22 6 1.7625 -3.4730 1.2196 23 6 0.4609 -2.6998 1.4455 24 1 -0.4851 0.8367 -0.0738 25 1 0.0519 -2.3448 -1.6212 26 1 0.0922 -3.9690 -0.8943 27 1 2.3351 -2.6544 -2.2848 28 1 0.7440 -5.0507 -2.9284 29 1 0.5948 -3.4859 -3.7634 30 1 2.3457 -6.2445 -5.4643 31 1 0.8337 -5.2894 -5.3817 32 1 2.7890 -4.9801 -7.3897 33 1 1.6257 -3.6967 -6.9185 34 1 3.8995 -2.4299 -7.7734 35 1 3.6804 -1.3997 -6.2924 36 1 5.7416 -2.2557 -5.2811 37 1 6.2196 -2.5967 -7.0002 38 1 5.3223 -4.6681 -5.1876 39 1 5.0712 -4.7622 -6.9851 40 1 1.6841 -4.5379 1.0007 41 1 2.6323 -3.1761 1.8056 42 1 0.4749 -1.8945 2.1799 43 1 -0.4739 -3.2561 1.3752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711401383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:10 Heat of formation + Delta-G solvation = -22.752505 kcal Electronic energy + Delta-G solvation = -20737.188787 eV Core-core repulsion = 17782.643058 eV Total energy + Delta-G solvation = -2954.545729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46691 -38.82122 -37.56310 -35.34569 -33.96898 -33.10842 -30.12570 -27.68925 -26.82512 -26.29811 -24.36644 -22.94874 -22.66221 -22.05574 -20.90188 -20.11277 -17.94327 -17.41220 -16.83300 -16.68220 -16.57615 -15.98342 -15.69931 -15.51582 -15.10046 -14.51152 -14.47865 -13.82430 -13.71515 -13.36499 -13.18185 -13.08941 -12.90312 -12.80915 -12.77371 -12.49955 -12.35605 -12.20043 -11.99176 -11.91214 -11.63652 -11.37656 -11.21030 -10.99380 -10.72646 -10.43273 -10.34600 -9.93558 -9.12238 -8.09628 -6.20067 1.38179 1.39816 1.49667 2.41780 2.76684 3.17998 3.28298 3.55678 3.64457 3.71142 3.84746 3.92552 4.04895 4.15255 4.19020 4.32365 4.38462 4.49858 4.59535 4.65490 4.70243 4.77598 4.79034 4.84877 4.90555 4.95087 4.98037 5.03575 5.04457 5.06256 5.08732 5.18723 5.23774 5.28084 5.36642 5.46749 5.66589 5.68494 5.79465 6.20211 6.38077 6.48242 6.62929 6.88154 7.47428 8.97916 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.005368 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.049292 B = 5214.630633 C = 6131.849555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.502 4.502 8 H 0.048 0.952 9 C 0.022 3.978 10 C 0.120 3.880 11 N -0.678 5.678 12 C 0.061 3.939 13 C 0.083 3.917 14 H 0.070 0.930 15 C -0.143 4.143 16 C -0.133 4.133 17 C 0.064 3.936 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.145 4.145 21 O -0.377 6.377 22 C -0.177 4.177 23 C -0.165 4.165 24 H 0.258 0.742 25 H -0.001 1.001 26 H 0.050 0.950 27 H 0.340 0.660 28 H 0.089 0.911 29 H 0.014 0.986 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 -10.572 -15.682 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.021 3.979 10 C -0.009 4.009 11 N -0.308 5.308 12 C -0.069 4.069 13 C 0.026 3.974 14 H 0.088 0.912 15 C -0.181 4.181 16 C -0.170 4.170 17 C 0.024 3.976 18 C -0.168 4.168 19 C -0.175 4.175 20 C -0.183 4.183 21 O -0.296 6.296 22 C -0.214 4.214 23 C -0.203 4.203 24 H 0.068 0.932 25 H 0.017 0.983 26 H 0.068 0.932 27 H 0.158 0.842 28 H 0.107 0.893 29 H 0.032 0.968 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.826 -10.844 -15.140 19.513 hybrid contribution -0.365 1.905 -0.031 1.940 sum 5.461 -8.939 -15.172 18.436 Atomic orbital electron populations 1.70088 1.06993 1.27126 1.50463 1.25642 0.95521 1.01720 0.94567 0.85754 0.78931 0.80107 0.78091 1.20424 1.20882 1.19443 1.20663 0.92773 0.90378 1.50204 0.93396 1.18900 0.98373 0.93658 0.86947 1.21172 0.91190 0.95152 0.93402 1.60468 1.22801 1.31989 1.15560 1.22243 0.95483 0.98804 0.90352 1.22864 0.93055 0.86340 0.95160 0.91232 1.22958 1.02380 1.00096 0.92663 1.22902 0.97502 0.98368 0.98226 1.22946 0.94406 0.97377 0.82859 1.22967 0.96282 0.96819 1.00733 1.22818 0.96776 0.96525 1.01343 1.23283 0.94873 0.97035 1.03061 1.88733 1.74495 1.37387 1.29009 1.22838 0.96588 0.96534 1.05471 1.22454 0.93727 1.01297 1.02847 0.93249 0.98262 0.93185 0.84209 0.89281 0.96770 0.88518 0.89973 0.87507 0.91007 0.86336 0.92736 0.92104 0.89323 0.92035 0.86669 0.89456 0.91079 0.92518 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.42 12.95 21.45 0.28 -53.14 16 2 C 0.03 1.44 5.39 84.66 0.46 1.90 16 3 Si 0.95 45.06 29.55 68.60 2.03 47.08 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.50 -28.43 8.33 25.60 0.21 -28.21 16 8 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 9 C 0.02 1.12 1.56 -52.93 -0.08 1.04 16 10 C 0.12 5.68 5.54 86.30 0.48 6.16 16 11 N -0.68 -28.71 6.47 -513.90 -3.33 -32.04 16 12 C 0.06 2.05 5.18 86.30 0.45 2.50 16 13 C 0.08 2.39 3.71 30.99 0.11 2.50 16 14 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 15 C -0.14 -2.85 6.65 31.67 0.21 -2.64 16 16 C -0.13 -2.46 6.48 31.58 0.20 -2.25 16 17 C 0.06 1.50 1.12 -10.73 -0.01 1.49 16 18 C -0.13 -2.81 7.64 30.81 0.24 -2.57 16 19 C -0.14 -2.83 8.09 31.25 0.25 -2.58 16 20 C -0.15 -2.81 7.63 30.81 0.24 -2.58 16 21 O -0.38 -12.42 10.42 -148.98 -1.55 -13.97 16 22 C -0.18 -8.05 9.96 30.62 0.30 -7.74 16 23 C -0.17 -8.10 9.46 30.62 0.29 -7.81 16 24 H 0.26 14.54 8.32 -92.71 -0.77 13.77 16 25 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 27 H 0.34 16.10 7.78 -89.70 -0.70 15.41 16 28 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.56 7.70 -2.39 -0.02 1.54 16 32 H 0.11 1.35 7.96 -2.39 -0.02 1.33 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 1.54 8.01 -2.39 -0.02 1.52 16 40 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 41 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.07 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -63.82 345.24 1.04 -62.79 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.26 Total: 30.07 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 3.35 Total: -40.80 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.05 Total: -85.17 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -1.55 Total: -13.97 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.82 1.04 -62.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711401383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.036 kcal (2) G-P(sol) polarization free energy of solvation -63.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds