Wall clock time and date at job start Mon Mar 30 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99659 * 2 1 4 4 H 1.48505 * 109.46682 * 269.99627 * 3 2 1 5 5 H 1.48497 * 109.46999 * 29.99735 * 3 2 1 6 6 H 1.48498 * 109.46823 * 150.00238 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00248 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47238 * 184.84257 * 9 7 2 11 11 C 1.46902 * 111.00646 * 285.62167 * 10 9 7 12 12 C 1.52995 * 109.47755 * 169.99866 * 11 10 9 13 13 H 1.09006 * 110.26714 * 57.92304 * 12 11 10 14 14 C 1.54998 * 110.30582 * 180.02562 * 12 11 10 15 15 C 1.55434 * 101.05228 * 155.04231 * 14 12 11 16 16 C 1.53913 * 102.02166 * 326.37361 * 15 14 12 17 17 C 1.53190 * 114.63615 * 151.41069 * 16 15 14 18 18 C 1.53890 * 86.91473 * 90.92511 * 17 16 15 19 19 C 1.53207 * 114.55426 * 250.64398 * 16 15 14 20 20 O 1.42626 * 108.28722 * 20.97024 * 16 15 14 21 21 C 1.46902 * 111.00039 * 161.66762 * 10 9 7 22 22 C 1.52994 * 117.49828 * 10.37025 * 21 10 9 23 23 C 1.52999 * 60.00265 * 252.50972 * 22 21 10 24 24 H 0.96993 * 120.00073 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47178 * 64.84645 * 9 7 2 26 26 H 1.08995 * 109.47018 * 304.84625 * 9 7 2 27 27 H 1.09007 * 109.46650 * 49.99608 * 11 10 9 28 28 H 1.08999 * 109.46880 * 290.00719 * 11 10 9 29 29 H 1.09004 * 111.10574 * 272.99681 * 14 12 11 30 30 H 1.09000 * 111.10945 * 37.07966 * 14 12 11 31 31 H 1.08999 * 110.91912 * 84.53173 * 15 14 12 32 32 H 1.09001 * 110.91290 * 208.16244 * 15 14 12 33 33 H 1.09000 * 113.63863 * 205.42549 * 17 16 15 34 34 H 1.08997 * 113.64587 * 336.42331 * 17 16 15 35 35 H 1.09008 * 113.60026 * 270.43038 * 18 17 16 36 36 H 1.09005 * 113.67644 * 139.58508 * 18 17 16 37 37 H 1.09005 * 113.64168 * 23.50146 * 19 16 15 38 38 H 1.08997 * 113.63878 * 154.40743 * 19 16 15 39 39 H 1.08998 * 115.55249 * 156.08173 * 21 10 9 40 40 H 1.09000 * 117.50211 * 359.97438 * 22 21 10 41 41 H 1.09006 * 117.50081 * 145.02104 * 22 21 10 42 42 H 1.08997 * 117.49792 * 252.51092 * 23 22 21 43 43 H 1.09002 * 117.51975 * 107.47736 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2014 -3.6131 0.1181 11 6 2.9195 -3.8283 -1.1453 12 6 4.0647 -4.8173 -0.9192 13 1 3.6787 -5.7592 -0.5292 14 6 4.8365 -5.0580 -2.2416 15 6 6.2282 -5.4892 -1.7001 16 6 6.3455 -4.6515 -0.4142 17 6 7.2065 -5.2840 0.6837 18 6 8.3980 -4.5288 0.0687 19 6 7.3757 -3.5197 -0.4834 20 8 5.0337 -4.2602 -0.0138 21 6 1.5222 -4.8409 0.5532 22 6 -0.0077 -4.8349 0.5665 23 6 0.7689 -4.7977 1.8842 24 1 -0.4850 0.8400 -0.0004 25 1 0.6916 -2.5956 -0.9299 26 1 0.5607 -2.5200 0.8436 27 1 3.3231 -2.8798 -1.4999 28 1 2.2326 -4.2316 -1.8894 29 1 4.3773 -5.8566 -2.8243 30 1 4.9095 -4.1409 -2.8260 31 1 6.2441 -6.5551 -1.4726 32 1 7.0174 -5.2316 -2.4064 33 1 6.9486 -4.9494 1.6885 34 1 7.2884 -6.3680 0.6049 35 1 8.9181 -5.0915 -0.7066 36 1 9.0755 -4.1029 0.8089 37 1 7.5934 -3.1882 -1.4988 38 1 7.1640 -2.6939 0.1957 39 1 2.0199 -5.7732 0.2866 40 1 -0.5103 -3.9200 0.2529 41 1 -0.5169 -5.7636 0.3085 42 1 0.7707 -5.7018 2.4931 43 1 0.7778 -3.8584 2.4373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712390312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:09 Heat of formation + Delta-G solvation = 8.303159 kcal Electronic energy + Delta-G solvation = -21102.820513 eV Core-core repulsion = 18149.621459 eV Total energy + Delta-G solvation = -2953.199055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26368 -38.09407 -36.22486 -33.43156 -32.31338 -31.69523 -28.72134 -26.34565 -25.67816 -24.00219 -22.68487 -22.29956 -21.62310 -20.95070 -18.85853 -18.58189 -16.62315 -16.58709 -15.82193 -15.25783 -14.92379 -14.81517 -14.25736 -13.85122 -13.42093 -13.10765 -12.92144 -12.35614 -12.12259 -12.09691 -11.99530 -11.65553 -11.48207 -11.14550 -11.06798 -10.89831 -10.88734 -10.69620 -10.64763 -10.42509 -10.28588 -10.21784 -10.02706 -9.75735 -9.52684 -9.06890 -8.91180 -8.35902 -6.98535 -5.96439 -3.96488 3.35729 3.41833 3.48080 4.03383 4.44680 4.52641 4.56053 4.61120 4.71817 4.82625 4.90233 5.02915 5.20578 5.22250 5.39175 5.41137 5.57406 5.63465 5.69432 5.72831 5.74807 5.78850 5.84612 5.88372 5.91800 5.95907 6.07600 6.16052 6.22060 6.24045 6.30420 6.42183 6.45143 6.67268 6.71858 6.85853 7.31632 7.35535 7.60473 7.90363 8.18484 8.28395 8.62547 9.12392 9.67147 11.14272 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.006474 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.429669 B = 4323.713307 C = 5504.610419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.501 4.501 8 H 0.065 0.935 9 C 0.189 3.811 10 N -0.493 5.493 11 C 0.067 3.933 12 C 0.087 3.913 13 H 0.062 0.938 14 C -0.153 4.153 15 C -0.128 4.128 16 C 0.079 3.921 17 C -0.141 4.141 18 C -0.141 4.141 19 C -0.139 4.139 20 O -0.331 6.331 21 C 0.026 3.974 22 C -0.228 4.228 23 C -0.174 4.174 24 H 0.260 0.740 25 H -0.010 1.010 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.477 -12.619 -2.967 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.539 4.539 8 H 0.083 0.917 9 C 0.065 3.935 10 N -0.215 5.215 11 C -0.061 4.061 12 C 0.029 3.971 13 H 0.080 0.920 14 C -0.191 4.191 15 C -0.166 4.166 16 C 0.038 3.962 17 C -0.178 4.178 18 C -0.178 4.178 19 C -0.177 4.177 20 O -0.250 6.250 21 C -0.084 4.084 22 C -0.267 4.267 23 C -0.212 4.212 24 H 0.070 0.930 25 H 0.007 0.993 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.633 -12.209 -2.433 17.039 hybrid contribution -0.264 0.570 -0.722 0.957 sum 11.369 -11.640 -3.156 16.574 Atomic orbital electron populations 1.69957 1.06005 1.26636 1.51563 1.24969 0.94833 0.99198 0.95655 0.86529 0.79944 0.83223 0.77947 1.20855 1.21337 1.19720 1.21213 0.93706 0.89822 1.49198 0.91729 1.19859 0.90466 0.87237 0.95973 1.61943 1.28444 1.02814 1.28280 1.22109 0.93415 0.99387 0.91236 1.23114 0.90083 0.96231 0.87683 0.92003 1.23331 0.95064 1.02354 0.98323 1.22814 0.97954 0.99735 0.96059 1.23100 0.84610 0.94800 0.93668 1.23305 0.95366 0.99397 0.99758 1.22696 0.96208 0.98497 1.00423 1.23281 0.94946 0.97712 1.01752 1.88622 1.12836 1.72861 1.50643 1.22643 0.90194 0.94907 1.00690 1.23594 0.97080 1.03019 1.03052 1.22952 1.04634 1.02617 0.90979 0.93049 0.99266 0.94226 0.89302 0.94846 0.90363 0.90094 0.90683 0.90313 0.89283 0.91624 0.90446 0.91155 0.91440 0.89086 0.88072 0.87550 0.90267 0.89771 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.20 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.50 -14.41 8.58 -34.44 -0.30 -14.71 16 8 H 0.06 1.89 7.57 -52.48 -0.40 1.49 16 9 C 0.19 4.99 3.38 -4.98 -0.02 4.97 16 10 N -0.49 -11.03 4.61 -228.09 -1.05 -12.08 16 11 C 0.07 1.31 4.50 -3.83 -0.02 1.29 16 12 C 0.09 1.41 3.37 -25.68 -0.09 1.32 16 13 H 0.06 0.97 6.40 -51.93 -0.33 0.63 16 14 C -0.15 -1.93 6.57 -24.38 -0.16 -2.09 16 15 C -0.13 -1.45 6.13 -24.96 -0.15 -1.60 16 16 C 0.08 1.09 1.66 -89.94 -0.15 0.94 16 17 C -0.14 -1.70 7.60 -26.17 -0.20 -1.89 16 18 C -0.14 -1.47 7.88 -25.81 -0.20 -1.67 16 19 C -0.14 -1.80 7.51 -26.16 -0.20 -2.00 16 20 O -0.33 -6.02 10.77 -35.23 -0.38 -6.40 16 21 C 0.03 0.50 5.83 -67.71 -0.39 0.10 16 22 C -0.23 -4.22 9.56 -26.73 -0.26 -4.47 16 23 C -0.17 -3.19 9.91 -26.73 -0.26 -3.46 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H -0.01 -0.29 7.83 -51.93 -0.41 -0.70 16 26 H 0.04 1.12 5.63 -51.93 -0.29 0.82 16 27 H 0.09 1.93 7.21 -51.93 -0.37 1.55 16 28 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 31 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 32 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.69 8.01 -51.93 -0.42 0.28 16 35 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.80 8.00 -51.93 -0.42 0.39 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.10 1.71 6.34 -51.93 -0.33 1.38 16 40 H 0.11 2.27 6.02 -51.93 -0.31 1.96 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.10 2.03 7.48 -51.93 -0.39 1.64 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -30.94 335.27 -10.57 -41.51 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.42 Total: 2.92 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -2.49 Total: -21.80 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.31 Total: -38.45 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.38 Total: -6.40 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.94 -10.57 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712390312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.816 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds