Wall clock time and date at job start Mon Mar 30 2020 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99659 * 2 1 4 4 H 1.48505 * 109.46682 * 269.99627 * 3 2 1 5 5 H 1.48497 * 109.46999 * 29.99735 * 3 2 1 6 6 H 1.48498 * 109.46823 * 150.00238 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00248 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47238 * 184.84257 * 9 7 2 11 11 C 1.46902 * 111.00646 * 285.62167 * 10 9 7 12 12 C 1.52995 * 109.47755 * 169.99866 * 11 10 9 13 13 H 1.09006 * 110.26714 * 57.92304 * 12 11 10 14 14 C 1.54998 * 110.30582 * 180.02562 * 12 11 10 15 15 C 1.55434 * 101.05228 * 155.04231 * 14 12 11 16 16 C 1.53913 * 102.02166 * 326.37361 * 15 14 12 17 17 C 1.53190 * 114.63615 * 151.41069 * 16 15 14 18 18 C 1.53890 * 86.91473 * 90.92511 * 17 16 15 19 19 C 1.53207 * 114.55426 * 250.64398 * 16 15 14 20 20 O 1.42626 * 108.28722 * 20.97024 * 16 15 14 21 21 C 1.46902 * 111.00039 * 161.66762 * 10 9 7 22 22 C 1.52994 * 117.49828 * 10.37025 * 21 10 9 23 23 C 1.52999 * 60.00265 * 252.50972 * 22 21 10 24 24 H 0.96993 * 120.00073 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47178 * 64.84645 * 9 7 2 26 26 H 1.08995 * 109.47018 * 304.84625 * 9 7 2 27 27 H 1.09007 * 109.46650 * 49.99608 * 11 10 9 28 28 H 1.08999 * 109.46880 * 290.00719 * 11 10 9 29 29 H 1.09004 * 111.10574 * 272.99681 * 14 12 11 30 30 H 1.09000 * 111.10945 * 37.07966 * 14 12 11 31 31 H 1.08999 * 110.91912 * 84.53173 * 15 14 12 32 32 H 1.09001 * 110.91290 * 208.16244 * 15 14 12 33 33 H 1.09000 * 113.63863 * 205.42549 * 17 16 15 34 34 H 1.08997 * 113.64587 * 336.42331 * 17 16 15 35 35 H 1.09008 * 113.60026 * 270.43038 * 18 17 16 36 36 H 1.09005 * 113.67644 * 139.58508 * 18 17 16 37 37 H 1.09005 * 113.64168 * 23.50146 * 19 16 15 38 38 H 1.08997 * 113.63878 * 154.40743 * 19 16 15 39 39 H 1.08998 * 115.55249 * 156.08173 * 21 10 9 40 40 H 1.09000 * 117.50211 * 359.97438 * 22 21 10 41 41 H 1.09006 * 117.50081 * 145.02104 * 22 21 10 42 42 H 1.08997 * 117.49792 * 252.51092 * 23 22 21 43 43 H 1.09002 * 117.51975 * 107.47736 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2014 -3.6131 0.1181 11 6 2.9195 -3.8283 -1.1453 12 6 4.0647 -4.8173 -0.9192 13 1 3.6787 -5.7592 -0.5292 14 6 4.8365 -5.0580 -2.2416 15 6 6.2282 -5.4892 -1.7001 16 6 6.3455 -4.6515 -0.4142 17 6 7.2065 -5.2840 0.6837 18 6 8.3980 -4.5288 0.0687 19 6 7.3757 -3.5197 -0.4834 20 8 5.0337 -4.2602 -0.0138 21 6 1.5222 -4.8409 0.5532 22 6 -0.0077 -4.8349 0.5665 23 6 0.7689 -4.7977 1.8842 24 1 -0.4850 0.8400 -0.0004 25 1 0.6916 -2.5956 -0.9299 26 1 0.5607 -2.5200 0.8436 27 1 3.3231 -2.8798 -1.4999 28 1 2.2326 -4.2316 -1.8894 29 1 4.3773 -5.8566 -2.8243 30 1 4.9095 -4.1409 -2.8260 31 1 6.2441 -6.5551 -1.4726 32 1 7.0174 -5.2316 -2.4064 33 1 6.9486 -4.9494 1.6885 34 1 7.2884 -6.3680 0.6049 35 1 8.9181 -5.0915 -0.7066 36 1 9.0755 -4.1029 0.8089 37 1 7.5934 -3.1882 -1.4988 38 1 7.1640 -2.6939 0.1957 39 1 2.0199 -5.7732 0.2866 40 1 -0.5103 -3.9200 0.2529 41 1 -0.5169 -5.7636 0.3085 42 1 0.7707 -5.7018 2.4931 43 1 0.7778 -3.8584 2.4373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712390312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:08 Heat of formation + Delta-G solvation = -10.842881 kcal Electronic energy + Delta-G solvation = -21103.650748 eV Core-core repulsion = 18149.621459 eV Total energy + Delta-G solvation = -2954.029289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34736 -39.68381 -37.37113 -35.33075 -34.16433 -32.89069 -30.33945 -28.14437 -26.64813 -25.38385 -24.49566 -23.34233 -23.15194 -22.26920 -20.40192 -19.71297 -18.70458 -17.76311 -17.02765 -16.95833 -16.60826 -15.92673 -15.84294 -15.30871 -14.72044 -14.56683 -14.24937 -13.98890 -13.77553 -13.40894 -13.27558 -12.96533 -12.83411 -12.78667 -12.55891 -12.46918 -12.33438 -12.17988 -12.02598 -11.79364 -11.69766 -11.52229 -11.41034 -11.16285 -11.08396 -11.06823 -10.60899 -10.13041 -8.75537 -8.21067 -6.30731 1.35683 1.37702 1.49967 2.37798 2.83194 3.01638 3.09582 3.37004 3.58146 3.68054 3.71810 3.89068 3.95308 3.98528 4.08021 4.17162 4.25224 4.25873 4.45792 4.55210 4.62590 4.74478 4.78083 4.81408 4.85105 4.88386 4.90606 5.00038 5.01911 5.07495 5.08763 5.14189 5.19417 5.27204 5.29874 5.32483 5.42500 5.51595 5.64897 6.07933 6.36010 6.49615 6.70282 6.85418 7.38182 8.88880 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.006474 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.429669 B = 4323.713307 C = 5504.610419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.212 3.788 10 N -0.511 5.511 11 C 0.069 3.931 12 C 0.090 3.910 13 H 0.074 0.926 14 C -0.147 4.147 15 C -0.116 4.116 16 C 0.060 3.940 17 C -0.140 4.140 18 C -0.122 4.122 19 C -0.151 4.151 20 O -0.374 6.374 21 C 0.016 3.984 22 C -0.221 4.221 23 C -0.170 4.170 24 H 0.264 0.736 25 H -0.038 1.038 26 H 0.014 0.986 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.135 0.865 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.407 -14.625 -3.701 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.559 4.559 8 H 0.071 0.929 9 C 0.086 3.914 10 N -0.232 5.232 11 C -0.059 4.059 12 C 0.032 3.968 13 H 0.092 0.908 14 C -0.185 4.185 15 C -0.153 4.153 16 C 0.020 3.980 17 C -0.178 4.178 18 C -0.159 4.159 19 C -0.189 4.189 20 O -0.293 6.293 21 C -0.093 4.093 22 C -0.261 4.261 23 C -0.208 4.208 24 H 0.073 0.927 25 H -0.021 1.021 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.575 -14.230 -3.172 19.921 hybrid contribution -0.894 1.196 -0.469 1.565 sum 12.680 -13.034 -3.641 18.545 Atomic orbital electron populations 1.70074 1.07486 1.27796 1.52007 1.25843 0.95747 1.02893 0.94931 0.85461 0.78500 0.78620 0.78536 1.19541 1.20338 1.19553 1.21458 0.93277 0.91488 1.49653 0.92947 1.19404 0.90256 0.88473 0.93293 1.61826 1.27847 1.03478 1.30046 1.22106 0.94582 0.99028 0.90167 1.23073 0.89079 0.94893 0.89739 0.90803 1.23317 0.95692 1.02972 0.96534 1.22823 0.97414 1.00361 0.94719 1.23556 0.82915 0.95801 0.95732 1.23276 0.95578 1.00689 0.98230 1.22674 0.95351 0.97085 1.00809 1.23322 0.96334 0.97461 1.01763 1.88579 1.14983 1.73891 1.51850 1.22865 0.90657 0.94540 1.01246 1.23502 0.96544 1.02929 1.03087 1.22994 1.04129 1.02742 0.90931 0.92684 1.02054 0.96840 0.92647 0.94090 0.87646 0.91088 0.88554 0.88212 0.91334 0.89535 0.87770 0.90504 0.90589 0.92015 0.84794 0.91399 0.86563 0.85848 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 7 C -0.52 -31.45 8.58 25.60 0.22 -31.23 16 8 H 0.05 3.22 7.57 -2.91 -0.02 3.20 16 9 C 0.21 11.84 3.38 85.56 0.29 12.13 16 10 N -0.51 -23.67 4.61 -875.54 -4.03 -27.70 16 11 C 0.07 2.78 4.50 86.30 0.39 3.17 16 12 C 0.09 2.83 3.37 31.28 0.11 2.94 16 13 H 0.07 2.13 6.40 -2.38 -0.02 2.12 16 14 C -0.15 -3.38 6.57 32.12 0.21 -3.17 16 15 C -0.12 -2.22 6.13 31.74 0.19 -2.02 16 16 C 0.06 1.57 1.66 -10.35 -0.02 1.55 16 17 C -0.14 -3.11 7.60 30.96 0.24 -2.87 16 18 C -0.12 -2.24 7.88 31.19 0.25 -1.99 16 19 C -0.15 -3.80 7.51 30.96 0.23 -3.57 16 20 O -0.37 -13.64 10.77 -148.98 -1.60 -15.25 16 21 C 0.02 0.62 5.83 44.91 0.26 0.88 16 22 C -0.22 -8.17 9.56 30.59 0.29 -7.87 16 23 C -0.17 -6.20 9.91 30.59 0.30 -5.90 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 25 H -0.04 -2.28 7.83 -2.39 -0.02 -2.30 16 26 H 0.01 0.82 5.63 -2.39 -0.01 0.80 16 27 H 0.05 2.55 7.21 -2.38 -0.02 2.53 16 28 H 0.04 1.55 8.12 -2.39 -0.02 1.53 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 31 H 0.10 1.47 8.00 -2.39 -0.02 1.45 16 32 H 0.10 1.52 7.85 -2.39 -0.02 1.50 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.54 8.01 -2.39 -0.02 1.52 16 35 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 1.72 8.00 -2.38 -0.02 1.70 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.13 4.18 6.34 -2.39 -0.02 4.17 16 40 H 0.07 3.05 6.02 -2.39 -0.01 3.04 16 41 H 0.12 3.40 8.14 -2.38 -0.02 3.38 16 42 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.06 2.79 7.48 -2.39 -0.02 2.77 16 Total: -1.00 -71.17 335.27 1.06 -70.10 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.97 Total: 19.16 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.42 Total: -37.27 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.75 Total: -85.38 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.60 Total: -15.25 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -71.17 1.06 -70.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712390312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.258 kcal (2) G-P(sol) polarization free energy of solvation -71.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds