Wall clock time and date at job start Mon Mar 30 2020 06:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48496 * 109.46973 * 90.00540 * 3 2 1 5 5 H 1.48499 * 109.47025 * 210.00226 * 3 2 1 6 6 H 1.48493 * 109.47086 * 330.00198 * 3 2 1 7 7 C 1.37882 * 119.99396 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00336 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47396 * 176.48115 * 9 7 2 11 11 C 1.46899 * 110.99979 * 199.90331 * 10 9 7 12 12 C 1.53001 * 109.46885 * 163.13434 * 11 10 9 13 13 H 1.09000 * 110.29564 * 311.03755 * 12 11 10 14 14 C 1.54553 * 110.33265 * 188.88780 * 12 11 10 15 15 C 1.54717 * 104.06945 * 217.44708 * 14 12 11 16 16 C 1.53554 * 103.75656 * 0.69836 * 15 14 12 17 17 C 1.52816 * 115.46318 * 253.20577 * 16 15 14 18 18 C 1.53952 * 86.78684 * 217.65580 * 17 16 15 19 19 C 1.52804 * 115.48821 * 152.49333 * 16 15 14 20 20 O 1.43449 * 106.19870 * 22.75302 * 16 15 14 21 21 C 1.46901 * 111.00171 * 75.94958 * 10 9 7 22 22 C 1.53003 * 117.49625 * 273.82861 * 21 10 9 23 23 C 1.52998 * 117.49948 * 205.20351 * 21 10 9 24 24 H 0.96990 * 120.00644 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46734 * 296.48192 * 9 7 2 26 26 H 1.09004 * 109.47234 * 56.47700 * 9 7 2 27 27 H 1.08998 * 109.47018 * 283.13206 * 11 10 9 28 28 H 1.09000 * 109.47166 * 43.13533 * 11 10 9 29 29 H 1.08998 * 110.50790 * 336.09468 * 14 12 11 30 30 H 1.09000 * 110.50868 * 98.66134 * 14 12 11 31 31 H 1.09003 * 110.56385 * 119.26284 * 15 14 12 32 32 H 1.09000 * 110.57004 * 241.97967 * 15 14 12 33 33 H 1.09003 * 113.66097 * 332.13022 * 17 16 15 34 34 H 1.08997 * 113.65824 * 103.18284 * 17 16 15 35 35 H 1.09003 * 113.58890 * 270.12162 * 18 17 16 36 36 H 1.09005 * 113.58556 * 139.30782 * 18 17 16 37 37 H 1.08993 * 113.66048 * 256.79644 * 19 16 15 38 38 H 1.08996 * 113.65899 * 27.85039 * 19 16 15 39 39 H 1.09006 * 115.54997 * 59.53191 * 21 10 9 40 40 H 1.09000 * 117.50178 * 359.97438 * 22 21 10 41 41 H 1.08998 * 117.49607 * 145.01902 * 22 21 10 42 42 H 1.08999 * 117.49829 * 214.97376 * 23 21 10 43 43 H 1.08997 * 117.50130 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0462 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4468 2.6526 -0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2031 -3.6145 -0.0862 11 6 1.5398 -4.8380 -0.5562 12 6 2.5945 -5.8393 -1.0318 13 1 3.2996 -5.3539 -1.7064 14 6 1.9183 -7.0387 -1.7339 15 6 2.7682 -8.2565 -1.2999 16 6 3.8359 -7.6473 -0.3797 17 6 5.2431 -7.5661 -0.9700 18 6 5.7598 -7.9201 0.4363 19 6 4.3944 -8.5847 0.6901 20 8 3.2923 -6.4093 0.0994 21 6 2.8685 -3.8389 1.2041 22 6 4.1215 -3.0143 1.5056 23 6 4.2458 -4.5047 1.1824 24 1 -0.4850 -0.8399 0.0004 25 1 0.6727 -2.5849 0.9196 26 1 0.5773 -2.5299 -0.8570 27 1 0.9648 -5.2760 0.2596 28 1 0.8714 -4.5946 -1.3822 29 1 0.8891 -7.1502 -1.3928 30 1 1.9496 -6.9148 -2.8163 31 1 2.1568 -8.9750 -0.7538 32 1 3.2306 -8.7292 -2.1664 33 1 5.4489 -8.3324 -1.7174 34 1 5.5221 -6.5653 -1.2995 35 1 5.9445 -7.0491 1.0652 36 1 6.5928 -8.6231 0.4308 37 1 3.9954 -8.3978 1.6869 38 1 4.3616 -9.6374 0.4096 39 1 2.2083 -4.0754 2.0387 40 1 4.4524 -2.3056 0.7464 41 1 4.2858 -2.7080 2.5387 42 1 4.4920 -5.1787 2.0028 43 1 4.6581 -4.7766 0.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712390316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:13 Heat of formation + Delta-G solvation = 7.630676 kcal Electronic energy + Delta-G solvation = -21453.737918 eV Core-core repulsion = 18500.509702 eV Total energy + Delta-G solvation = -2953.228216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49678 -37.72436 -35.98413 -33.80274 -32.51511 -31.85217 -28.97844 -26.12136 -25.75489 -24.01003 -22.31693 -22.06633 -21.40153 -20.82344 -19.55941 -19.20096 -16.86609 -16.14132 -15.76561 -15.26557 -14.99340 -14.64102 -14.26908 -13.99903 -13.65057 -13.52891 -13.00248 -12.59419 -12.38400 -12.18250 -12.07433 -11.56604 -11.41418 -11.22911 -11.12499 -10.95798 -10.80213 -10.63642 -10.55012 -10.41740 -10.32677 -10.10795 -10.04648 -9.55772 -9.16429 -9.02817 -8.60708 -8.28083 -7.30855 -6.27245 -3.94782 3.48503 3.52516 3.68193 3.82583 4.48586 4.50216 4.52927 4.65498 4.75270 4.76703 4.84751 5.07685 5.13387 5.17352 5.38582 5.47866 5.54993 5.60168 5.66831 5.70879 5.76355 5.80058 5.84588 5.87517 5.90299 5.98287 6.03517 6.06283 6.20832 6.28065 6.35325 6.38919 6.44981 6.50692 6.80423 6.98098 7.03256 7.17784 7.21985 7.88697 8.14384 8.39196 8.71346 8.96704 9.74564 11.11089 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.005073 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.074754 B = 5518.050166 C = 6034.260163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 1.073 2.927 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.575 4.575 8 H 0.061 0.939 9 C 0.185 3.815 10 N -0.503 5.503 11 C 0.063 3.937 12 C 0.086 3.914 13 H 0.074 0.926 14 C -0.151 4.151 15 C -0.137 4.137 16 C 0.076 3.924 17 C -0.156 4.156 18 C -0.135 4.135 19 C -0.129 4.129 20 O -0.323 6.323 21 C 0.035 3.965 22 C -0.167 4.167 23 C -0.141 4.141 24 H 0.265 0.735 25 H -0.020 1.020 26 H 0.017 0.983 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.391 -17.860 -1.408 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.192 4.192 3 Si 0.902 3.098 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.613 4.613 8 H 0.079 0.921 9 C 0.060 3.940 10 N -0.227 5.227 11 C -0.066 4.066 12 C 0.028 3.972 13 H 0.092 0.908 14 C -0.189 4.189 15 C -0.175 4.175 16 C 0.036 3.964 17 C -0.194 4.194 18 C -0.172 4.172 19 C -0.166 4.166 20 O -0.241 6.241 21 C -0.075 4.075 22 C -0.204 4.204 23 C -0.179 4.179 24 H 0.075 0.925 25 H -0.003 1.003 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.561 -15.971 -1.542 18.186 hybrid contribution -0.669 -1.971 0.387 2.117 sum 7.892 -17.941 -1.155 19.635 Atomic orbital electron populations 1.70763 1.06920 1.30227 1.47883 1.25809 0.96502 1.02610 0.94289 0.83478 0.74664 0.75045 0.76607 1.21639 1.21447 1.21192 1.22050 0.95085 0.90593 1.53619 0.92069 1.19831 0.90542 0.89181 0.94414 1.61839 1.31763 1.03652 1.25460 1.22110 0.94144 0.90947 0.99393 1.23084 0.93618 0.92752 0.87767 0.90800 1.22985 1.00186 0.94775 1.00948 1.22717 0.97388 0.98006 0.99345 1.22618 0.92290 0.87027 0.94464 1.23320 0.96481 1.02452 0.97105 1.22821 0.96384 1.00774 0.97215 1.22882 0.96341 0.97936 0.99440 1.89288 1.69877 1.32270 1.32688 1.21933 0.89543 1.04556 0.91427 1.22996 1.01895 0.94446 1.01082 1.22778 0.99703 0.93630 1.01768 0.92488 1.00268 0.96485 0.95087 0.90339 0.90934 0.90754 0.90975 0.90919 0.89877 0.90735 0.89596 0.91810 0.90706 0.89480 0.91981 0.88241 0.90365 0.90604 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.51 13.65 55.43 0.76 -27.75 16 2 C 0.01 0.30 5.46 -17.82 -0.10 0.21 16 3 Si 1.07 25.93 29.90 -169.99 -5.08 20.84 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.57 -16.49 8.69 -34.44 -0.30 -16.79 16 8 H 0.06 1.75 5.80 -52.49 -0.30 1.45 16 9 C 0.19 4.91 4.10 -4.98 -0.02 4.89 16 10 N -0.50 -11.19 4.49 -228.08 -1.03 -12.21 16 11 C 0.06 1.16 4.69 -3.82 -0.02 1.14 16 12 C 0.09 1.31 2.88 -25.91 -0.07 1.24 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.15 -1.82 6.64 -25.01 -0.17 -1.99 16 15 C -0.14 -1.45 6.48 -25.54 -0.17 -1.61 16 16 C 0.08 0.90 1.13 -90.54 -0.10 0.80 16 17 C -0.16 -1.66 7.57 -26.33 -0.20 -1.86 16 18 C -0.13 -1.36 8.09 -25.75 -0.21 -1.57 16 19 C -0.13 -1.32 7.61 -26.33 -0.20 -1.52 16 20 O -0.32 -4.86 6.57 -35.23 -0.23 -5.09 16 21 C 0.03 0.72 4.30 -67.71 -0.29 0.43 16 22 C -0.17 -3.30 9.56 -26.73 -0.26 -3.56 16 23 C -0.14 -2.48 7.35 -26.73 -0.20 -2.68 16 24 H 0.26 8.19 7.21 -40.82 -0.29 7.90 16 25 H -0.02 -0.57 7.97 -51.93 -0.41 -0.99 16 26 H 0.02 0.47 7.36 -51.93 -0.38 0.09 16 27 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 28 H 0.08 1.42 7.66 -51.93 -0.40 1.03 16 29 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 33 H 0.08 0.75 7.97 -51.93 -0.41 0.33 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.10 2.15 6.66 -51.93 -0.35 1.81 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.67 6.79 -51.93 -0.35 1.32 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -30.82 331.17 -10.47 -41.29 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.58 Total: 0.81 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.29 Total: -22.87 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.27 Total: -39.97 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.23 Total: -5.09 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.82 -10.47 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712390316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.920 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds