Wall clock time and date at job start Mon Mar 30 2020 06:38:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 120.00440 * 2 1
4 4 H 1.48496 * 109.46973 * 90.00540 * 3 2 1
5 5 H 1.48499 * 109.47025 * 210.00226 * 3 2 1
6 6 H 1.48493 * 109.47086 * 330.00198 * 3 2 1
7 7 C 1.37882 * 119.99396 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00014 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00336 * 359.97438 * 7 2 1
10 10 N 1.46897 * 109.47396 * 176.48115 * 9 7 2
11 11 C 1.46899 * 110.99979 * 199.90331 * 10 9 7
12 12 C 1.53001 * 109.46885 * 163.13434 * 11 10 9
13 13 H 1.09000 * 110.29564 * 311.03755 * 12 11 10
14 14 C 1.54553 * 110.33265 * 188.88780 * 12 11 10
15 15 C 1.54717 * 104.06945 * 217.44708 * 14 12 11
16 16 C 1.53554 * 103.75656 * 0.69836 * 15 14 12
17 17 C 1.52816 * 115.46318 * 253.20577 * 16 15 14
18 18 C 1.53952 * 86.78684 * 217.65580 * 17 16 15
19 19 C 1.52804 * 115.48821 * 152.49333 * 16 15 14
20 20 O 1.43449 * 106.19870 * 22.75302 * 16 15 14
21 21 C 1.46901 * 111.00171 * 75.94958 * 10 9 7
22 22 C 1.53003 * 117.49625 * 273.82861 * 21 10 9
23 23 C 1.52998 * 117.49948 * 205.20351 * 21 10 9
24 24 H 0.96990 * 120.00644 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46734 * 296.48192 * 9 7 2
26 26 H 1.09004 * 109.47234 * 56.47700 * 9 7 2
27 27 H 1.08998 * 109.47018 * 283.13206 * 11 10 9
28 28 H 1.09000 * 109.47166 * 43.13533 * 11 10 9
29 29 H 1.08998 * 110.50790 * 336.09468 * 14 12 11
30 30 H 1.09000 * 110.50868 * 98.66134 * 14 12 11
31 31 H 1.09003 * 110.56385 * 119.26284 * 15 14 12
32 32 H 1.09000 * 110.57004 * 241.97967 * 15 14 12
33 33 H 1.09003 * 113.66097 * 332.13022 * 17 16 15
34 34 H 1.08997 * 113.65824 * 103.18284 * 17 16 15
35 35 H 1.09003 * 113.58890 * 270.12162 * 18 17 16
36 36 H 1.09005 * 113.58556 * 139.30782 * 18 17 16
37 37 H 1.08993 * 113.66048 * 256.79644 * 19 16 15
38 38 H 1.08996 * 113.65899 * 27.85039 * 19 16 15
39 39 H 1.09006 * 115.54997 * 59.53191 * 21 10 9
40 40 H 1.09000 * 117.50178 * 359.97438 * 22 21 10
41 41 H 1.08998 * 117.49607 * 145.01902 * 22 21 10
42 42 H 1.08999 * 117.49829 * 214.97376 * 23 21 10
43 43 H 1.08997 * 117.50130 * 359.97438 * 23 21 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4969 2.0462 1.4000
5 1 3.5468 1.4400 -0.7001
6 1 1.4468 2.6526 -0.7000
7 6 2.0044 -1.1942 -0.0005
8 1 3.0844 -1.1943 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2031 -3.6145 -0.0862
11 6 1.5398 -4.8380 -0.5562
12 6 2.5945 -5.8393 -1.0318
13 1 3.2996 -5.3539 -1.7064
14 6 1.9183 -7.0387 -1.7339
15 6 2.7682 -8.2565 -1.2999
16 6 3.8359 -7.6473 -0.3797
17 6 5.2431 -7.5661 -0.9700
18 6 5.7598 -7.9201 0.4363
19 6 4.3944 -8.5847 0.6901
20 8 3.2923 -6.4093 0.0994
21 6 2.8685 -3.8389 1.2041
22 6 4.1215 -3.0143 1.5056
23 6 4.2458 -4.5047 1.1824
24 1 -0.4850 -0.8399 0.0004
25 1 0.6727 -2.5849 0.9196
26 1 0.5773 -2.5299 -0.8570
27 1 0.9648 -5.2760 0.2596
28 1 0.8714 -4.5946 -1.3822
29 1 0.8891 -7.1502 -1.3928
30 1 1.9496 -6.9148 -2.8163
31 1 2.1568 -8.9750 -0.7538
32 1 3.2306 -8.7292 -2.1664
33 1 5.4489 -8.3324 -1.7174
34 1 5.5221 -6.5653 -1.2995
35 1 5.9445 -7.0491 1.0652
36 1 6.5928 -8.6231 0.4308
37 1 3.9954 -8.3978 1.6869
38 1 4.3616 -9.6374 0.4096
39 1 2.2083 -4.0754 2.0387
40 1 4.4524 -2.3056 0.7464
41 1 4.2858 -2.7080 2.5387
42 1 4.4920 -5.1787 2.0028
43 1 4.6581 -4.7766 0.2107
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000712390316.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:38:12
Heat of formation + Delta-G solvation = -10.237716 kcal
Electronic energy + Delta-G solvation = -21454.512749 eV
Core-core repulsion = 18500.509702 eV
Total energy + Delta-G solvation = -2954.003047 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.49544 -39.29671 -37.07892 -35.71191 -34.36851 -32.95728 -30.46258 -27.83860
-26.64580 -25.35664 -24.35703 -23.27508 -22.82637 -21.96316 -21.24522 -20.09827
-18.99498 -17.29052 -16.83744 -16.57116 -16.30994 -16.07704 -15.81701 -15.58756
-15.43266 -14.56697 -14.26626 -14.04501 -13.74801 -13.58459 -13.32109 -13.15106
-13.01150 -12.58104 -12.49594 -12.40915 -12.22284 -12.05792 -11.90651 -11.79711
-11.63039 -11.34036 -11.06132 -10.97591 -10.83083 -10.58380 -10.53418 -10.27834
-9.17793 -8.62611 -6.32184 1.52708 1.62285 1.80239 2.56767 2.77746
3.00090 3.19149 3.21644 3.60620 3.69059 3.79096 3.96757 4.02741
4.07312 4.11217 4.16355 4.28856 4.37616 4.41812 4.50803 4.61102
4.67188 4.76913 4.80126 4.83808 4.88522 4.90987 4.93653 4.96683
5.01419 5.07745 5.10614 5.19650 5.21697 5.28940 5.41440 5.47610
5.49979 5.84880 6.04984 6.19297 6.44160 6.47643 6.66706 7.46900
8.74886
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.031240 B = 0.005073 C = 0.004639
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 896.074754 B = 5518.050166 C = 6034.260163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.944 5.944
2 C -0.041 4.041
3 Si 1.122 2.878
4 H -0.275 1.275
5 H -0.270 1.270
6 H -0.283 1.283
7 C -0.582 4.582
8 H 0.060 0.940
9 C 0.197 3.803
10 N -0.507 5.507
11 C 0.062 3.938
12 C 0.094 3.906
13 H 0.062 0.938
14 C -0.147 4.147
15 C -0.129 4.129
16 C 0.061 3.939
17 C -0.152 4.152
18 C -0.133 4.133
19 C -0.122 4.122
20 O -0.344 6.344
21 C 0.009 3.991
22 C -0.175 4.175
23 C -0.094 4.094
24 H 0.251 0.749
25 H -0.050 1.050
26 H -0.001 1.001
27 H 0.024 0.976
28 H 0.075 0.925
29 H 0.071 0.929
30 H 0.088 0.912
31 H 0.080 0.920
32 H 0.095 0.905
33 H 0.106 0.894
34 H 0.056 0.944
35 H 0.070 0.930
36 H 0.083 0.917
37 H 0.063 0.937
38 H 0.112 0.888
39 H 0.048 0.952
40 H 0.079 0.921
41 H 0.092 0.908
42 H 0.097 0.903
43 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.390 -19.580 -1.787 22.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.237 4.237
3 Si 0.943 3.057
4 H -0.200 1.200
5 H -0.195 1.195
6 H -0.209 1.209
7 C -0.621 4.621
8 H 0.079 0.921
9 C 0.071 3.929
10 N -0.231 5.231
11 C -0.067 4.067
12 C 0.036 3.964
13 H 0.080 0.920
14 C -0.185 4.185
15 C -0.167 4.167
16 C 0.021 3.979
17 C -0.190 4.190
18 C -0.171 4.171
19 C -0.159 4.159
20 O -0.263 6.263
21 C -0.100 4.100
22 C -0.213 4.213
23 C -0.131 4.131
24 H 0.060 0.940
25 H -0.032 1.032
26 H 0.017 0.983
27 H 0.042 0.958
28 H 0.093 0.907
29 H 0.089 0.911
30 H 0.106 0.894
31 H 0.099 0.901
32 H 0.113 0.887
33 H 0.124 0.876
34 H 0.075 0.925
35 H 0.089 0.911
36 H 0.101 0.899
37 H 0.081 0.919
38 H 0.130 0.870
39 H 0.066 0.934
40 H 0.098 0.902
41 H 0.110 0.890
42 H 0.115 0.885
43 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 10.572 -17.734 -1.920 20.735
hybrid contribution -1.297 -1.523 0.524 2.068
sum 9.275 -19.257 -1.396 21.420
Atomic orbital electron populations
1.70896 1.07978 1.29418 1.49951 1.27365 0.96523 1.06595 0.93228
0.82869 0.74159 0.71034 0.77611 1.20049 1.19453 1.20883 1.22345
0.95176 0.91646 1.52902 0.92150 1.19547 0.90617 0.90727 0.92053
1.61811 1.30777 1.04145 1.26328 1.22207 0.95320 0.90275 0.98856
1.22840 0.92634 0.93144 0.87782 0.92023 1.22963 1.00113 0.93988
1.01419 1.22726 0.96781 0.97238 0.99957 1.22941 0.93147 0.86095
0.95736 1.23345 0.95488 1.02227 0.97898 1.22799 0.97135 1.00643
0.96489 1.22926 0.95795 0.98899 0.98300 1.89218 1.70176 1.34036
1.32881 1.21985 0.90365 1.07212 0.90467 1.23022 1.01309 0.95626
1.01330 1.22686 0.95804 0.92227 1.02386 0.93996 1.03223 0.98319
0.95793 0.90708 0.91056 0.89367 0.90108 0.88685 0.87609 0.92510
0.91140 0.89862 0.91856 0.87004 0.93393 0.90199 0.88967 0.88458
0.88650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -60.00 13.65 21.45 0.29 -59.71 16
2 C -0.04 -2.43 5.46 84.66 0.46 -1.96 16
3 Si 1.12 52.08 29.90 68.60 2.05 54.13 16
4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16
5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16
6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
7 C -0.58 -34.25 8.69 25.60 0.22 -34.03 16
8 H 0.06 3.51 5.80 -2.91 -0.02 3.49 16
9 C 0.20 10.92 4.10 85.56 0.35 11.27 16
10 N -0.51 -23.28 4.49 -875.51 -3.93 -27.21 16
11 C 0.06 2.34 4.69 86.30 0.41 2.75 16
12 C 0.09 2.83 2.88 31.12 0.09 2.92 16
13 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
14 C -0.15 -3.29 6.64 31.71 0.21 -3.08 16
15 C -0.13 -2.33 6.48 31.37 0.20 -2.13 16
16 C 0.06 1.28 1.13 -10.74 -0.01 1.27 16
17 C -0.15 -2.81 7.57 30.85 0.23 -2.58 16
18 C -0.13 -2.32 8.09 31.23 0.25 -2.06 16
19 C -0.12 -2.12 7.61 30.85 0.23 -1.89 16
20 O -0.34 -9.95 6.57 -148.98 -0.98 -10.93 16
21 C 0.01 0.37 4.30 44.92 0.19 0.56 16
22 C -0.18 -6.93 9.56 30.60 0.29 -6.63 16
23 C -0.09 -3.20 7.35 30.60 0.22 -2.97 16
24 H 0.25 16.22 7.21 -92.72 -0.67 15.56 16
25 H -0.05 -3.00 7.97 -2.38 -0.02 -3.02 16
26 H 0.00 -0.07 7.36 -2.38 -0.02 -0.09 16
27 H 0.02 0.93 8.04 -2.39 -0.02 0.91 16
28 H 0.07 2.83 7.66 -2.39 -0.02 2.81 16
29 H 0.07 1.62 7.87 -2.39 -0.02 1.60 16
30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
31 H 0.08 1.33 8.12 -2.39 -0.02 1.32 16
32 H 0.09 1.31 7.85 -2.39 -0.02 1.29 16
33 H 0.11 1.48 7.97 -2.39 -0.02 1.46 16
34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16
37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16
39 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16
40 H 0.08 3.48 6.66 -2.39 -0.02 3.46 16
41 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16
42 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16
43 H 0.10 3.28 6.79 -2.39 -0.02 3.26 16
Total: -1.00 -68.11 331.17 1.85 -66.26
By element:
Atomic # 1 Polarization: 14.97 SS G_CDS: 1.06 Total: 16.03 kcal
Atomic # 6 Polarization: -41.93 SS G_CDS: 3.36 Total: -38.56 kcal
Atomic # 7 Polarization: -83.28 SS G_CDS: -3.64 Total: -86.93 kcal
Atomic # 8 Polarization: -9.95 SS G_CDS: -0.98 Total: -10.93 kcal
Atomic # 14 Polarization: 52.08 SS G_CDS: 2.05 Total: 54.13 kcal
Total: -68.11 1.85 -66.26 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000712390316.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.023 kcal
(2) G-P(sol) polarization free energy of solvation -68.113 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.091 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.238 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds