Wall clock time and date at job start Mon Mar 30 2020 06:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48496 * 109.46973 * 90.00540 * 3 2 1 5 5 H 1.48499 * 109.47025 * 210.00226 * 3 2 1 6 6 H 1.48493 * 109.47086 * 330.00198 * 3 2 1 7 7 C 1.37882 * 119.99396 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00336 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47396 * 176.48115 * 9 7 2 11 11 C 1.46899 * 110.99979 * 199.90331 * 10 9 7 12 12 C 1.53001 * 109.46885 * 163.13434 * 11 10 9 13 13 H 1.09000 * 110.29564 * 311.03755 * 12 11 10 14 14 C 1.54553 * 110.33265 * 188.88780 * 12 11 10 15 15 C 1.54717 * 104.06945 * 217.44708 * 14 12 11 16 16 C 1.53554 * 103.75656 * 0.69836 * 15 14 12 17 17 C 1.52816 * 115.46318 * 253.20577 * 16 15 14 18 18 C 1.53952 * 86.78684 * 217.65580 * 17 16 15 19 19 C 1.52804 * 115.48821 * 152.49333 * 16 15 14 20 20 O 1.43449 * 106.19870 * 22.75302 * 16 15 14 21 21 C 1.46901 * 111.00171 * 75.94958 * 10 9 7 22 22 C 1.53003 * 117.49625 * 273.82861 * 21 10 9 23 23 C 1.52998 * 117.49948 * 205.20351 * 21 10 9 24 24 H 0.96990 * 120.00644 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46734 * 296.48192 * 9 7 2 26 26 H 1.09004 * 109.47234 * 56.47700 * 9 7 2 27 27 H 1.08998 * 109.47018 * 283.13206 * 11 10 9 28 28 H 1.09000 * 109.47166 * 43.13533 * 11 10 9 29 29 H 1.08998 * 110.50790 * 336.09468 * 14 12 11 30 30 H 1.09000 * 110.50868 * 98.66134 * 14 12 11 31 31 H 1.09003 * 110.56385 * 119.26284 * 15 14 12 32 32 H 1.09000 * 110.57004 * 241.97967 * 15 14 12 33 33 H 1.09003 * 113.66097 * 332.13022 * 17 16 15 34 34 H 1.08997 * 113.65824 * 103.18284 * 17 16 15 35 35 H 1.09003 * 113.58890 * 270.12162 * 18 17 16 36 36 H 1.09005 * 113.58556 * 139.30782 * 18 17 16 37 37 H 1.08993 * 113.66048 * 256.79644 * 19 16 15 38 38 H 1.08996 * 113.65899 * 27.85039 * 19 16 15 39 39 H 1.09006 * 115.54997 * 59.53191 * 21 10 9 40 40 H 1.09000 * 117.50178 * 359.97438 * 22 21 10 41 41 H 1.08998 * 117.49607 * 145.01902 * 22 21 10 42 42 H 1.08999 * 117.49829 * 214.97376 * 23 21 10 43 43 H 1.08997 * 117.50130 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0462 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4468 2.6526 -0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2031 -3.6145 -0.0862 11 6 1.5398 -4.8380 -0.5562 12 6 2.5945 -5.8393 -1.0318 13 1 3.2996 -5.3539 -1.7064 14 6 1.9183 -7.0387 -1.7339 15 6 2.7682 -8.2565 -1.2999 16 6 3.8359 -7.6473 -0.3797 17 6 5.2431 -7.5661 -0.9700 18 6 5.7598 -7.9201 0.4363 19 6 4.3944 -8.5847 0.6901 20 8 3.2923 -6.4093 0.0994 21 6 2.8685 -3.8389 1.2041 22 6 4.1215 -3.0143 1.5056 23 6 4.2458 -4.5047 1.1824 24 1 -0.4850 -0.8399 0.0004 25 1 0.6727 -2.5849 0.9196 26 1 0.5773 -2.5299 -0.8570 27 1 0.9648 -5.2760 0.2596 28 1 0.8714 -4.5946 -1.3822 29 1 0.8891 -7.1502 -1.3928 30 1 1.9496 -6.9148 -2.8163 31 1 2.1568 -8.9750 -0.7538 32 1 3.2306 -8.7292 -2.1664 33 1 5.4489 -8.3324 -1.7174 34 1 5.5221 -6.5653 -1.2995 35 1 5.9445 -7.0491 1.0652 36 1 6.5928 -8.6231 0.4308 37 1 3.9954 -8.3978 1.6869 38 1 4.3616 -9.6374 0.4096 39 1 2.2083 -4.0754 2.0387 40 1 4.4524 -2.3056 0.7464 41 1 4.2858 -2.7080 2.5387 42 1 4.4920 -5.1787 2.0028 43 1 4.6581 -4.7766 0.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712390316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:12 Heat of formation + Delta-G solvation = -10.237716 kcal Electronic energy + Delta-G solvation = -21454.512749 eV Core-core repulsion = 18500.509702 eV Total energy + Delta-G solvation = -2954.003047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49544 -39.29671 -37.07892 -35.71191 -34.36851 -32.95728 -30.46258 -27.83860 -26.64580 -25.35664 -24.35703 -23.27508 -22.82637 -21.96316 -21.24522 -20.09827 -18.99498 -17.29052 -16.83744 -16.57116 -16.30994 -16.07704 -15.81701 -15.58756 -15.43266 -14.56697 -14.26626 -14.04501 -13.74801 -13.58459 -13.32109 -13.15106 -13.01150 -12.58104 -12.49594 -12.40915 -12.22284 -12.05792 -11.90651 -11.79711 -11.63039 -11.34036 -11.06132 -10.97591 -10.83083 -10.58380 -10.53418 -10.27834 -9.17793 -8.62611 -6.32184 1.52708 1.62285 1.80239 2.56767 2.77746 3.00090 3.19149 3.21644 3.60620 3.69059 3.79096 3.96757 4.02741 4.07312 4.11217 4.16355 4.28856 4.37616 4.41812 4.50803 4.61102 4.67188 4.76913 4.80126 4.83808 4.88522 4.90987 4.93653 4.96683 5.01419 5.07745 5.10614 5.19650 5.21697 5.28940 5.41440 5.47610 5.49979 5.84880 6.04984 6.19297 6.44160 6.47643 6.66706 7.46900 8.74886 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.005073 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.074754 B = 5518.050166 C = 6034.260163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.041 4.041 3 Si 1.122 2.878 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.582 4.582 8 H 0.060 0.940 9 C 0.197 3.803 10 N -0.507 5.507 11 C 0.062 3.938 12 C 0.094 3.906 13 H 0.062 0.938 14 C -0.147 4.147 15 C -0.129 4.129 16 C 0.061 3.939 17 C -0.152 4.152 18 C -0.133 4.133 19 C -0.122 4.122 20 O -0.344 6.344 21 C 0.009 3.991 22 C -0.175 4.175 23 C -0.094 4.094 24 H 0.251 0.749 25 H -0.050 1.050 26 H -0.001 1.001 27 H 0.024 0.976 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.390 -19.580 -1.787 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.237 4.237 3 Si 0.943 3.057 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.621 4.621 8 H 0.079 0.921 9 C 0.071 3.929 10 N -0.231 5.231 11 C -0.067 4.067 12 C 0.036 3.964 13 H 0.080 0.920 14 C -0.185 4.185 15 C -0.167 4.167 16 C 0.021 3.979 17 C -0.190 4.190 18 C -0.171 4.171 19 C -0.159 4.159 20 O -0.263 6.263 21 C -0.100 4.100 22 C -0.213 4.213 23 C -0.131 4.131 24 H 0.060 0.940 25 H -0.032 1.032 26 H 0.017 0.983 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.572 -17.734 -1.920 20.735 hybrid contribution -1.297 -1.523 0.524 2.068 sum 9.275 -19.257 -1.396 21.420 Atomic orbital electron populations 1.70896 1.07978 1.29418 1.49951 1.27365 0.96523 1.06595 0.93228 0.82869 0.74159 0.71034 0.77611 1.20049 1.19453 1.20883 1.22345 0.95176 0.91646 1.52902 0.92150 1.19547 0.90617 0.90727 0.92053 1.61811 1.30777 1.04145 1.26328 1.22207 0.95320 0.90275 0.98856 1.22840 0.92634 0.93144 0.87782 0.92023 1.22963 1.00113 0.93988 1.01419 1.22726 0.96781 0.97238 0.99957 1.22941 0.93147 0.86095 0.95736 1.23345 0.95488 1.02227 0.97898 1.22799 0.97135 1.00643 0.96489 1.22926 0.95795 0.98899 0.98300 1.89218 1.70176 1.34036 1.32881 1.21985 0.90365 1.07212 0.90467 1.23022 1.01309 0.95626 1.01330 1.22686 0.95804 0.92227 1.02386 0.93996 1.03223 0.98319 0.95793 0.90708 0.91056 0.89367 0.90108 0.88685 0.87609 0.92510 0.91140 0.89862 0.91856 0.87004 0.93393 0.90199 0.88967 0.88458 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.00 13.65 21.45 0.29 -59.71 16 2 C -0.04 -2.43 5.46 84.66 0.46 -1.96 16 3 Si 1.12 52.08 29.90 68.60 2.05 54.13 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.58 -34.25 8.69 25.60 0.22 -34.03 16 8 H 0.06 3.51 5.80 -2.91 -0.02 3.49 16 9 C 0.20 10.92 4.10 85.56 0.35 11.27 16 10 N -0.51 -23.28 4.49 -875.51 -3.93 -27.21 16 11 C 0.06 2.34 4.69 86.30 0.41 2.75 16 12 C 0.09 2.83 2.88 31.12 0.09 2.92 16 13 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.15 -3.29 6.64 31.71 0.21 -3.08 16 15 C -0.13 -2.33 6.48 31.37 0.20 -2.13 16 16 C 0.06 1.28 1.13 -10.74 -0.01 1.27 16 17 C -0.15 -2.81 7.57 30.85 0.23 -2.58 16 18 C -0.13 -2.32 8.09 31.23 0.25 -2.06 16 19 C -0.12 -2.12 7.61 30.85 0.23 -1.89 16 20 O -0.34 -9.95 6.57 -148.98 -0.98 -10.93 16 21 C 0.01 0.37 4.30 44.92 0.19 0.56 16 22 C -0.18 -6.93 9.56 30.60 0.29 -6.63 16 23 C -0.09 -3.20 7.35 30.60 0.22 -2.97 16 24 H 0.25 16.22 7.21 -92.72 -0.67 15.56 16 25 H -0.05 -3.00 7.97 -2.38 -0.02 -3.02 16 26 H 0.00 -0.07 7.36 -2.38 -0.02 -0.09 16 27 H 0.02 0.93 8.04 -2.39 -0.02 0.91 16 28 H 0.07 2.83 7.66 -2.39 -0.02 2.81 16 29 H 0.07 1.62 7.87 -2.39 -0.02 1.60 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.33 8.12 -2.39 -0.02 1.32 16 32 H 0.09 1.31 7.85 -2.39 -0.02 1.29 16 33 H 0.11 1.48 7.97 -2.39 -0.02 1.46 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.08 3.48 6.66 -2.39 -0.02 3.46 16 41 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.10 3.28 6.79 -2.39 -0.02 3.26 16 Total: -1.00 -68.11 331.17 1.85 -66.26 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.06 Total: 16.03 kcal Atomic # 6 Polarization: -41.93 SS G_CDS: 3.36 Total: -38.56 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -3.64 Total: -86.93 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.98 Total: -10.93 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.05 Total: 54.13 kcal Total: -68.11 1.85 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712390316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.023 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds