Wall clock time and date at job start Mon Mar 30 2020 06:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99827 * 2 1 4 4 H 1.48500 * 109.47114 * 270.00244 * 3 2 1 5 5 H 1.48506 * 109.47222 * 30.00242 * 3 2 1 6 6 H 1.48502 * 109.47084 * 150.00249 * 3 2 1 7 7 C 1.37872 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99958 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.78000 * 61.80731 * 9 7 2 11 11 C 1.54590 * 110.73033 * 298.55362 * 9 7 2 12 12 C 1.53990 * 105.22598 * 219.73353 * 11 9 7 13 13 N 1.47898 * 107.06057 * 358.72508 * 12 11 9 14 14 C 1.46903 * 111.00299 * 145.84518 * 13 12 11 15 15 C 1.52996 * 109.47208 * 183.80429 * 14 13 12 16 16 H 1.08999 * 110.29848 * 308.42618 * 15 14 13 17 17 C 1.54542 * 110.33372 * 186.27007 * 15 14 13 18 18 C 1.54716 * 104.07442 * 217.44706 * 17 15 14 19 19 C 1.53559 * 103.75290 * 0.70388 * 18 17 15 20 20 C 1.52814 * 115.45932 * 253.20484 * 19 18 17 21 21 C 1.53966 * 86.78741 * 217.65498 * 20 19 18 22 22 C 1.52801 * 115.49023 * 152.49396 * 19 18 17 23 23 O 1.43442 * 106.19822 * 22.74723 * 19 18 17 24 24 C 1.48531 * 105.82191 * 25.33009 * 13 12 11 25 25 H 0.97001 * 120.00251 * 359.97438 * 1 2 3 26 26 H 1.08995 * 110.31210 * 100.76593 * 11 9 7 27 27 H 1.09006 * 110.30477 * 338.69548 * 11 9 7 28 28 H 1.09005 * 109.91873 * 118.07475 * 12 11 9 29 29 H 1.09002 * 109.91614 * 239.36650 * 12 11 9 30 30 H 1.08996 * 109.46856 * 303.80584 * 14 13 12 31 31 H 1.09005 * 109.46577 * 63.80458 * 14 13 12 32 32 H 1.08998 * 110.51010 * 336.10195 * 17 15 14 33 33 H 1.09007 * 110.50842 * 98.80653 * 17 15 14 34 34 H 1.09002 * 110.56446 * 119.26234 * 18 17 15 35 35 H 1.08993 * 110.57453 * 241.98495 * 18 17 15 36 36 H 1.09004 * 113.66279 * 332.12502 * 20 19 18 37 37 H 1.08999 * 113.66274 * 103.18590 * 20 19 18 38 38 H 1.08998 * 113.58451 * 270.11929 * 21 20 19 39 39 H 1.08994 * 113.58362 * 139.30869 * 21 20 19 40 40 H 1.09000 * 113.65762 * 256.78932 * 22 19 18 41 41 H 1.08998 * 113.66307 * 27.84316 * 22 19 18 42 42 H 1.09000 * 110.66476 * 79.22711 * 24 13 12 43 43 H 1.08996 * 110.66584 * 202.19453 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6404 -2.5931 -0.8986 11 6 0.3795 -2.6278 1.2697 12 6 0.5071 -4.1007 1.7003 13 7 1.3761 -4.7692 0.7076 14 6 2.1981 -5.8082 1.3424 15 6 3.1487 -6.4104 0.3059 16 1 2.5947 -6.7211 -0.5799 17 6 3.9119 -7.6106 0.9104 18 6 5.3310 -7.4979 0.3045 19 6 5.2547 -6.2396 -0.5723 20 6 5.2236 -6.4900 -2.0794 21 6 6.1082 -5.2375 -2.2183 22 6 6.5754 -5.4981 -0.7747 23 8 4.1730 -5.4543 -0.0519 24 6 2.2263 -3.6984 0.1274 25 1 -0.4850 0.8400 0.0004 26 1 -0.6592 -2.3889 1.0417 27 1 0.7548 -1.9704 2.0542 28 1 0.9600 -4.1604 2.6900 29 1 -0.4761 -4.5713 1.7099 30 1 2.7772 -5.3678 2.1540 31 1 1.5514 -6.5904 1.7401 32 1 3.9527 -7.5292 1.9966 33 1 3.4436 -8.5493 0.6142 34 1 6.0744 -7.3717 1.0916 35 1 5.5601 -8.3754 -0.3001 36 1 5.7208 -7.4122 -2.3800 37 1 4.2335 -6.3774 -2.5212 38 1 5.5412 -4.3137 -2.3332 39 1 6.9007 -5.3433 -2.9591 40 1 6.6654 -4.5931 -0.1740 41 1 7.4528 -6.1414 -0.7083 42 1 3.0488 -3.4537 0.7996 43 1 2.6055 -3.9957 -0.8503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712391924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:58 Heat of formation + Delta-G solvation = -25.706917 kcal Electronic energy + Delta-G solvation = -21283.783427 eV Core-core repulsion = 18329.109584 eV Total energy + Delta-G solvation = -2954.673842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47421 -37.96206 -36.05041 -33.11220 -32.13953 -30.84483 -28.33553 -27.47302 -25.79600 -24.88665 -23.69121 -21.88478 -20.93239 -19.88167 -19.36670 -19.02778 -16.51212 -16.21603 -15.71028 -15.18847 -14.92746 -14.69227 -14.34643 -13.90586 -13.53001 -13.16284 -12.93504 -12.48294 -12.28516 -12.24022 -11.95479 -11.65822 -11.64073 -11.04855 -10.98135 -10.97189 -10.89132 -10.59357 -10.52294 -10.40426 -10.29632 -10.08331 -10.04811 -9.51982 -9.37609 -8.99930 -8.65928 -8.31282 -7.63199 -5.93647 -3.95839 3.35191 3.41471 3.45277 3.82394 4.47142 4.50220 4.54636 4.56961 4.81705 4.85855 5.03666 5.15898 5.17988 5.36026 5.39741 5.52393 5.59484 5.62572 5.73452 5.75548 5.81957 5.89741 5.92826 5.96027 6.03327 6.10883 6.18410 6.23174 6.33504 6.38010 6.40499 6.65360 6.77296 7.06858 7.22079 7.28758 7.30616 7.68832 7.78314 7.86679 7.98773 8.14661 8.57031 9.07120 9.67653 11.16334 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.005755 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.357556 B = 4864.496891 C = 5897.541603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.032 0.968 11 C -0.101 4.101 12 C 0.034 3.966 13 N -0.525 5.525 14 C 0.054 3.946 15 C 0.082 3.918 16 H 0.075 0.925 17 C -0.149 4.149 18 C -0.137 4.137 19 C 0.078 3.922 20 C -0.156 4.156 21 C -0.135 4.135 22 C -0.130 4.130 23 O -0.329 6.329 24 C 0.056 3.944 25 H 0.259 0.741 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.522 -15.635 0.394 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.051 0.949 11 C -0.140 4.140 12 C -0.094 4.094 13 N -0.249 5.249 14 C -0.075 4.075 15 C 0.024 3.976 16 H 0.093 0.907 17 C -0.187 4.187 18 C -0.175 4.175 19 C 0.037 3.963 20 C -0.194 4.194 21 C -0.173 4.173 22 C -0.167 4.167 23 O -0.248 6.248 24 C -0.071 4.071 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.055 0.945 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.037 -15.542 0.035 17.978 hybrid contribution 0.877 1.056 0.733 1.556 sum 9.914 -14.486 0.768 17.570 Atomic orbital electron populations 1.69984 1.05837 1.26296 1.50709 1.24963 0.94814 0.98904 0.95252 0.86656 0.79895 0.83743 0.78068 1.20708 1.21340 1.20000 1.21110 0.92812 0.90404 1.50526 0.92664 1.19601 0.92229 0.91324 0.93843 0.94945 1.22297 1.01336 0.90468 0.99878 1.22953 0.96300 0.97331 0.92790 1.64824 1.19161 1.12000 1.28891 1.22301 0.94209 0.96310 0.94715 1.23026 0.89288 0.87841 0.97459 0.90707 1.22973 0.95545 0.98934 1.01278 1.22727 0.97409 0.97925 0.99416 1.22626 0.89805 0.90849 0.92977 1.23328 1.01247 0.98478 0.96322 1.22831 0.99248 0.98875 0.96309 1.22894 0.95236 1.00991 0.97587 1.89224 1.25621 1.28466 1.81466 1.23316 0.94846 0.90708 0.98223 0.93175 0.92246 0.92893 0.95588 0.92199 0.94544 0.90501 0.90839 0.90695 0.90817 0.90769 0.89804 0.90697 0.89327 0.91679 0.90402 0.89375 0.94512 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 12.44 55.43 0.69 -25.52 16 2 C 0.06 1.77 5.33 -17.82 -0.10 1.68 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.53 8.43 -34.44 -0.29 -14.82 16 8 H 0.06 1.57 7.78 -52.49 -0.41 1.16 16 9 C 0.05 1.30 2.99 -89.82 -0.27 1.03 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.10 -2.48 5.50 -25.38 -0.14 -2.62 16 12 C 0.03 0.69 6.70 -2.76 -0.02 0.68 16 13 N -0.52 -10.54 5.35 -230.34 -1.23 -11.77 16 14 C 0.05 0.87 4.56 -3.82 -0.02 0.86 16 15 C 0.08 1.20 3.23 -25.92 -0.08 1.11 16 16 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.15 -1.66 6.65 -25.02 -0.17 -1.83 16 18 C -0.14 -1.44 6.48 -25.54 -0.17 -1.61 16 19 C 0.08 1.00 1.13 -90.54 -0.10 0.90 16 20 C -0.16 -1.82 7.57 -26.32 -0.20 -2.02 16 21 C -0.14 -1.62 8.09 -25.74 -0.21 -1.83 16 22 C -0.13 -1.53 7.61 -26.33 -0.20 -1.73 16 23 O -0.33 -5.46 8.29 -35.23 -0.29 -5.75 16 24 C 0.06 1.27 4.25 -1.81 -0.01 1.27 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 27 H 0.05 1.37 7.84 -51.93 -0.41 0.97 16 28 H 0.03 0.50 7.67 -51.93 -0.40 0.10 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.63 7.98 -51.93 -0.41 0.21 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 33 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 36 H 0.08 0.79 7.97 -51.93 -0.41 0.38 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.88 7.55 -51.93 -0.39 0.49 16 43 H 0.07 1.53 7.17 -51.93 -0.37 1.16 16 LS Contribution 331.03 15.07 4.99 4.99 Total: -1.00 -29.93 331.03 -10.65 -40.59 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.82 Total: -0.41 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -1.96 Total: -18.94 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.54 Total: -37.29 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.29 Total: -5.75 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.93 -10.65 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712391924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.880 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds