Wall clock time and date at job start Mon Mar 30 2020 06:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99827 * 2 1 4 4 H 1.48500 * 109.47114 * 270.00244 * 3 2 1 5 5 H 1.48506 * 109.47222 * 30.00242 * 3 2 1 6 6 H 1.48502 * 109.47084 * 150.00249 * 3 2 1 7 7 C 1.37872 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99958 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.78000 * 61.80731 * 9 7 2 11 11 C 1.54590 * 110.73033 * 298.55362 * 9 7 2 12 12 C 1.53990 * 105.22598 * 219.73353 * 11 9 7 13 13 N 1.47898 * 107.06057 * 358.72508 * 12 11 9 14 14 C 1.46903 * 111.00299 * 145.84518 * 13 12 11 15 15 C 1.52996 * 109.47208 * 183.80429 * 14 13 12 16 16 H 1.08999 * 110.29848 * 308.42618 * 15 14 13 17 17 C 1.54542 * 110.33372 * 186.27007 * 15 14 13 18 18 C 1.54716 * 104.07442 * 217.44706 * 17 15 14 19 19 C 1.53559 * 103.75290 * 0.70388 * 18 17 15 20 20 C 1.52814 * 115.45932 * 253.20484 * 19 18 17 21 21 C 1.53966 * 86.78741 * 217.65498 * 20 19 18 22 22 C 1.52801 * 115.49023 * 152.49396 * 19 18 17 23 23 O 1.43442 * 106.19822 * 22.74723 * 19 18 17 24 24 C 1.48531 * 105.82191 * 25.33009 * 13 12 11 25 25 H 0.97001 * 120.00251 * 359.97438 * 1 2 3 26 26 H 1.08995 * 110.31210 * 100.76593 * 11 9 7 27 27 H 1.09006 * 110.30477 * 338.69548 * 11 9 7 28 28 H 1.09005 * 109.91873 * 118.07475 * 12 11 9 29 29 H 1.09002 * 109.91614 * 239.36650 * 12 11 9 30 30 H 1.08996 * 109.46856 * 303.80584 * 14 13 12 31 31 H 1.09005 * 109.46577 * 63.80458 * 14 13 12 32 32 H 1.08998 * 110.51010 * 336.10195 * 17 15 14 33 33 H 1.09007 * 110.50842 * 98.80653 * 17 15 14 34 34 H 1.09002 * 110.56446 * 119.26234 * 18 17 15 35 35 H 1.08993 * 110.57453 * 241.98495 * 18 17 15 36 36 H 1.09004 * 113.66279 * 332.12502 * 20 19 18 37 37 H 1.08999 * 113.66274 * 103.18590 * 20 19 18 38 38 H 1.08998 * 113.58451 * 270.11929 * 21 20 19 39 39 H 1.08994 * 113.58362 * 139.30869 * 21 20 19 40 40 H 1.09000 * 113.65762 * 256.78932 * 22 19 18 41 41 H 1.08998 * 113.66307 * 27.84316 * 22 19 18 42 42 H 1.09000 * 110.66476 * 79.22711 * 24 13 12 43 43 H 1.08996 * 110.66584 * 202.19453 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6404 -2.5931 -0.8986 11 6 0.3795 -2.6278 1.2697 12 6 0.5071 -4.1007 1.7003 13 7 1.3761 -4.7692 0.7076 14 6 2.1981 -5.8082 1.3424 15 6 3.1487 -6.4104 0.3059 16 1 2.5947 -6.7211 -0.5799 17 6 3.9119 -7.6106 0.9104 18 6 5.3310 -7.4979 0.3045 19 6 5.2547 -6.2396 -0.5723 20 6 5.2236 -6.4900 -2.0794 21 6 6.1082 -5.2375 -2.2183 22 6 6.5754 -5.4981 -0.7747 23 8 4.1730 -5.4543 -0.0519 24 6 2.2263 -3.6984 0.1274 25 1 -0.4850 0.8400 0.0004 26 1 -0.6592 -2.3889 1.0417 27 1 0.7548 -1.9704 2.0542 28 1 0.9600 -4.1604 2.6900 29 1 -0.4761 -4.5713 1.7099 30 1 2.7772 -5.3678 2.1540 31 1 1.5514 -6.5904 1.7401 32 1 3.9527 -7.5292 1.9966 33 1 3.4436 -8.5493 0.6142 34 1 6.0744 -7.3717 1.0916 35 1 5.5601 -8.3754 -0.3001 36 1 5.7208 -7.4122 -2.3800 37 1 4.2335 -6.3774 -2.5212 38 1 5.5412 -4.3137 -2.3332 39 1 6.9007 -5.3433 -2.9591 40 1 6.6654 -4.5931 -0.1740 41 1 7.4528 -6.1414 -0.7083 42 1 3.0488 -3.4537 0.7996 43 1 2.6055 -3.9957 -0.8503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712391924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:57 Heat of formation + Delta-G solvation = -43.934281 kcal Electronic energy + Delta-G solvation = -21284.573824 eV Core-core repulsion = 18329.109584 eV Total energy + Delta-G solvation = -2955.464240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49503 -39.61818 -37.21240 -35.09962 -33.27133 -32.45865 -30.14098 -28.95664 -26.85376 -26.57457 -25.13572 -22.98574 -22.15192 -21.57388 -21.12020 -20.13630 -18.41485 -17.62458 -16.74644 -16.70217 -16.40590 -16.12324 -15.86182 -15.40303 -14.83446 -14.53212 -14.08931 -13.97200 -13.85926 -13.63045 -13.22988 -13.04011 -12.94945 -12.91040 -12.55944 -12.49970 -12.32927 -12.13708 -11.87039 -11.81786 -11.58602 -11.50842 -11.29081 -11.06535 -10.98764 -10.82613 -10.52229 -10.39236 -9.28902 -8.15018 -6.25462 1.38308 1.38847 1.49753 2.40803 2.83767 3.13122 3.18758 3.57911 3.64518 3.77277 3.92159 4.05603 4.07117 4.14961 4.17354 4.30216 4.40727 4.46914 4.54417 4.63153 4.71305 4.75057 4.78424 4.84695 4.87009 4.93172 4.97867 5.01733 5.06518 5.11417 5.20268 5.23442 5.29290 5.31154 5.37863 5.47240 5.59177 5.78712 5.86789 6.01365 6.18479 6.28813 6.40830 6.83626 7.41870 8.94620 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.005755 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.357556 B = 4864.496891 C = 5897.541603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.048 0.952 9 C 0.038 3.962 10 H -0.003 1.003 11 C -0.092 4.092 12 C 0.043 3.957 13 N -0.529 5.529 14 C 0.052 3.948 15 C 0.077 3.923 16 H 0.065 0.935 17 C -0.140 4.140 18 C -0.130 4.130 19 C 0.062 3.938 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.126 4.126 23 O -0.369 6.369 24 C 0.084 3.916 25 H 0.262 0.738 26 H 0.039 0.961 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.029 0.971 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.021 0.979 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.974 -17.655 1.007 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.066 0.934 9 C 0.019 3.981 10 H 0.015 0.985 11 C -0.131 4.131 12 C -0.085 4.085 13 N -0.253 5.253 14 C -0.076 4.076 15 C 0.020 3.980 16 H 0.083 0.917 17 C -0.178 4.178 18 C -0.167 4.167 19 C 0.022 3.978 20 C -0.186 4.186 21 C -0.178 4.178 22 C -0.163 4.163 23 O -0.289 6.289 24 C -0.043 4.043 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.039 0.961 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.493 -17.579 0.650 20.483 hybrid contribution 0.409 1.690 0.502 1.810 sum 10.902 -15.889 1.152 19.303 Atomic orbital electron populations 1.70102 1.07204 1.27314 1.51000 1.25757 0.95717 1.02390 0.94610 0.85602 0.78681 0.79277 0.78393 1.19924 1.20456 1.19466 1.21376 0.92671 0.91897 1.51185 0.93418 1.19581 0.92931 0.92402 0.93201 0.98452 1.22075 0.99404 0.93328 0.98299 1.22864 0.97812 0.94375 0.93414 1.64802 1.19316 1.11530 1.29626 1.22475 0.94579 0.95613 0.94898 1.23073 0.89202 0.88878 0.96860 0.91655 1.22947 0.95461 0.97987 1.01438 1.22732 0.97171 0.97402 0.99427 1.22930 0.89109 0.91784 0.93994 1.23344 1.00340 0.99417 0.95498 1.22801 0.99761 0.97801 0.97484 1.22965 0.96121 1.00617 0.96605 1.89180 1.27108 1.30581 1.82031 1.22846 0.93591 0.90223 0.97688 0.92942 0.94191 0.94976 0.93894 0.89975 0.95229 0.87491 0.90241 0.88383 0.90063 0.88226 0.86658 0.92701 0.92737 0.89478 0.92655 0.86176 0.96083 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.48 12.44 21.45 0.27 -55.21 16 2 C 0.01 0.83 5.33 84.65 0.45 1.28 16 3 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.53 -31.57 8.43 25.60 0.22 -31.36 16 8 H 0.05 2.82 7.78 -2.91 -0.02 2.80 16 9 C 0.04 2.10 2.99 -10.28 -0.03 2.07 16 10 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 11 C -0.09 -4.68 5.50 31.47 0.17 -4.51 16 12 C 0.04 1.73 6.70 86.45 0.58 2.31 16 13 N -0.53 -21.12 5.35 -882.67 -4.72 -25.84 16 14 C 0.05 1.63 4.56 86.30 0.39 2.02 16 15 C 0.08 2.17 3.23 31.12 0.10 2.27 16 16 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 17 C -0.14 -2.67 6.65 31.70 0.21 -2.46 16 18 C -0.13 -2.29 6.48 31.37 0.20 -2.09 16 19 C 0.06 1.49 1.13 -10.74 -0.01 1.48 16 20 C -0.15 -3.25 7.57 30.86 0.23 -3.02 16 21 C -0.14 -3.33 8.09 31.24 0.25 -3.08 16 22 C -0.13 -2.82 7.61 30.85 0.23 -2.58 16 23 O -0.37 -12.31 8.29 -148.98 -1.24 -13.55 16 24 C 0.08 3.97 4.25 86.71 0.37 4.34 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.04 2.12 8.05 -2.39 -0.02 2.10 16 27 H 0.03 1.71 7.84 -2.38 -0.02 1.69 16 28 H 0.04 1.59 7.67 -2.38 -0.02 1.57 16 29 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.03 0.97 7.98 -2.39 -0.02 0.95 16 31 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 32 H 0.08 1.43 7.87 -2.39 -0.02 1.42 16 33 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 35 H 0.10 1.27 7.85 -2.39 -0.02 1.25 16 36 H 0.12 1.78 7.97 -2.39 -0.02 1.76 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.12 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.02 1.05 7.55 -2.39 -0.02 1.03 16 43 H 0.06 2.79 7.17 -2.39 -0.02 2.77 16 Total: -1.00 -67.49 331.03 0.66 -66.83 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.95 Total: 13.50 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 3.37 Total: -33.31 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -4.46 Total: -81.06 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.24 Total: -13.55 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -67.49 0.66 -66.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712391924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.899 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds