Wall clock time and date at job start Mon Mar 30 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.62686 * 300.70099 * 9 7 2 11 11 C 1.55136 * 110.70530 * 63.80809 * 9 7 2 12 12 C 1.55115 * 101.56085 * 153.90587 * 11 9 7 13 13 N 1.47850 * 104.90239 * 323.15407 * 12 11 9 14 14 C 1.46900 * 110.99863 * 146.23898 * 13 12 11 15 15 C 1.53007 * 109.46866 * 69.15899 * 14 13 12 16 16 H 1.08998 * 110.26414 * 60.61718 * 15 14 13 17 17 C 1.55001 * 110.29839 * 182.79365 * 15 14 13 18 18 C 1.55436 * 101.01028 * 155.05060 * 17 15 14 19 19 C 1.53853 * 102.05173 * 326.33089 * 18 17 15 20 20 C 1.53191 * 114.62457 * 151.44716 * 19 18 17 21 21 C 1.53893 * 86.91503 * 90.96411 * 20 19 18 22 22 C 1.53209 * 114.59106 * 250.69163 * 19 18 17 23 23 O 1.42624 * 108.26782 * 21.03079 * 19 18 17 24 24 C 1.47446 * 108.56630 * 23.97526 * 13 12 11 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09006 * 110.98742 * 272.12473 * 11 9 7 27 27 H 1.09001 * 110.99522 * 35.94090 * 11 9 7 28 28 H 1.09002 * 110.42726 * 204.23869 * 12 11 9 29 29 H 1.08998 * 110.30993 * 82.01256 * 12 11 9 30 30 H 1.09003 * 109.47060 * 189.15822 * 14 13 12 31 31 H 1.08997 * 109.47085 * 309.16201 * 14 13 12 32 32 H 1.08994 * 111.11247 * 272.98835 * 17 15 14 33 33 H 1.09003 * 111.10690 * 37.11952 * 17 15 14 34 34 H 1.08999 * 110.91908 * 208.14198 * 18 17 15 35 35 H 1.09007 * 110.94469 * 84.53574 * 18 17 15 36 36 H 1.08999 * 113.64041 * 205.46857 * 20 19 18 37 37 H 1.08993 * 113.64504 * 336.45569 * 20 19 18 38 38 H 1.08997 * 113.59680 * 270.42654 * 21 20 19 39 39 H 1.08997 * 113.59437 * 139.57361 * 21 20 19 40 40 H 1.08993 * 113.63599 * 23.51033 * 22 19 18 41 41 H 1.08992 * 113.63987 * 154.40898 * 22 19 18 42 42 H 1.09000 * 109.88631 * 239.60587 * 24 13 12 43 43 H 1.09000 * 109.88841 * 118.41288 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6076 -2.5718 0.8751 11 6 0.4226 -2.6530 -1.3043 12 6 0.3220 -4.1959 -1.4283 13 7 1.6289 -4.7013 -0.9564 14 6 1.4775 -5.9905 -0.2687 15 6 1.0922 -7.0681 -1.2843 16 1 1.8693 -7.1679 -2.0420 17 6 0.8588 -8.4229 -0.5684 18 6 -0.1016 -9.1255 -1.5683 19 6 -0.9139 -7.9410 -2.1198 20 6 -1.4385 -8.1356 -3.5459 21 6 -2.7095 -8.7248 -2.9090 22 6 -2.3733 -7.8975 -1.6557 23 8 -0.1670 -6.7459 -1.9003 24 6 2.2273 -3.6927 -0.0627 25 1 -0.4849 0.8400 0.0004 26 1 -0.5639 -2.2022 -1.1951 27 1 0.9524 -2.2277 -2.1566 28 1 0.1561 -4.4841 -2.4664 29 1 -0.4818 -4.5746 -0.7970 30 1 2.4198 -6.2608 0.2080 31 1 0.6975 -5.9091 0.4882 32 1 1.7913 -8.9775 -0.4640 33 1 0.3798 -8.2778 0.3999 34 1 -0.7491 -9.8349 -1.0529 35 1 0.4569 -9.6185 -2.3641 36 1 -1.6102 -7.2009 -4.0798 37 1 -0.8658 -8.8579 -4.1276 38 1 -2.6578 -9.8016 -2.7479 39 1 -3.6297 -8.4137 -3.4033 40 1 -2.5505 -8.4289 -0.7207 41 1 -2.8045 -6.8965 -1.6624 42 1 3.1875 -3.3664 -0.4622 43 1 2.3614 -4.1134 0.9339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712391931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:02 Heat of formation + Delta-G solvation = -27.841861 kcal Electronic energy + Delta-G solvation = -20996.022967 eV Core-core repulsion = 18041.256547 eV Total energy + Delta-G solvation = -2954.766420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46861 -38.00603 -36.28111 -33.09227 -32.16089 -30.72641 -28.04892 -27.74498 -25.83056 -24.65629 -23.67473 -22.41770 -21.05789 -19.78472 -19.37512 -18.84212 -16.76147 -16.39694 -15.98641 -15.16805 -15.03905 -14.56529 -14.33163 -13.72059 -13.49950 -13.12238 -12.82653 -12.40292 -12.29398 -12.21911 -12.03907 -11.68727 -11.40052 -11.27792 -11.15461 -11.04978 -10.93952 -10.72606 -10.59935 -10.56303 -10.40544 -10.31915 -9.90080 -9.48535 -9.22666 -9.13322 -8.75920 -8.31346 -7.45086 -5.95659 -3.98208 3.36188 3.40396 3.43284 3.85362 4.39546 4.44953 4.47933 4.54114 4.62903 4.72528 4.89102 5.08667 5.16887 5.32134 5.37364 5.53754 5.55804 5.59170 5.65232 5.70290 5.73742 5.79543 5.88059 5.90732 5.98317 6.06513 6.19478 6.27027 6.33955 6.41292 6.42258 6.55000 6.87485 6.95942 7.28863 7.35317 7.37486 7.70243 7.77782 7.96819 7.99645 8.10125 8.49415 9.03115 9.65169 11.14249 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.004208 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.566036 B = 6653.000082 C = 7139.220613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.034 3.966 10 H 0.026 0.974 11 C -0.106 4.106 12 C 0.054 3.946 13 N -0.531 5.531 14 C 0.054 3.946 15 C 0.087 3.913 16 H 0.074 0.926 17 C -0.151 4.151 18 C -0.128 4.128 19 C 0.080 3.920 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.140 4.140 23 O -0.344 6.344 24 C 0.047 3.953 25 H 0.260 0.740 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -19.314 -3.458 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.015 3.985 10 H 0.044 0.956 11 C -0.145 4.145 12 C -0.073 4.073 13 N -0.256 5.256 14 C -0.075 4.075 15 C 0.030 3.970 16 H 0.092 0.908 17 C -0.189 4.189 18 C -0.166 4.166 19 C 0.040 3.960 20 C -0.178 4.178 21 C -0.178 4.178 22 C -0.177 4.177 23 O -0.263 6.263 24 C -0.080 4.080 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.535 -19.065 -3.926 19.629 hybrid contribution -0.034 0.832 0.793 1.150 sum -2.569 -18.233 -3.133 18.677 Atomic orbital electron populations 1.69960 1.05914 1.26492 1.50533 1.24974 0.94829 0.99007 0.95104 0.86679 0.79596 0.83244 0.78586 1.20236 1.21387 1.20360 1.21061 0.92709 0.90319 1.50819 0.92592 1.19795 0.92703 0.92027 0.93978 0.95553 1.22681 1.01123 0.91012 0.99636 1.23058 0.88603 0.96489 0.99175 1.63593 1.23498 1.02048 1.36416 1.22386 0.99813 0.91117 0.94199 1.23057 0.86902 0.92735 0.94343 0.90767 1.23314 1.00001 0.96336 0.99276 1.22807 0.97873 0.96998 0.98895 1.23101 0.91517 0.85761 0.95635 1.23308 0.96666 1.01482 0.96367 1.22694 0.98198 0.99322 0.97586 1.23282 0.95532 1.01178 0.97742 1.88582 1.29265 1.28029 1.80431 1.22989 0.99730 0.92625 0.92665 0.93078 0.91366 0.92830 0.91721 0.94852 0.90599 0.94777 0.90065 0.90446 0.90271 0.90438 0.89229 0.91443 0.90340 0.91015 0.91456 0.89196 0.91403 0.95178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 12.28 55.43 0.68 -25.51 16 2 C 0.06 1.77 5.34 -17.82 -0.10 1.68 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.41 8.48 -34.44 -0.29 -14.71 16 8 H 0.06 1.55 7.55 -52.49 -0.40 1.15 16 9 C 0.03 0.89 2.82 -89.95 -0.25 0.64 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.11 -2.63 5.86 -24.48 -0.14 -2.78 16 12 C 0.05 1.15 5.05 -2.18 -0.01 1.14 16 13 N -0.53 -10.74 5.16 -231.10 -1.19 -11.93 16 14 C 0.05 0.89 4.46 -3.82 -0.02 0.87 16 15 C 0.09 1.24 3.69 -25.67 -0.09 1.14 16 16 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.15 -1.60 6.58 -24.38 -0.16 -1.76 16 18 C -0.13 -1.25 6.13 -24.99 -0.15 -1.40 16 19 C 0.08 0.96 1.65 -89.97 -0.15 0.81 16 20 C -0.14 -1.51 7.60 -26.17 -0.20 -1.71 16 21 C -0.14 -1.29 7.88 -25.81 -0.20 -1.49 16 22 C -0.14 -1.55 7.51 -26.16 -0.20 -1.75 16 23 O -0.34 -5.36 8.00 -35.23 -0.28 -5.64 16 24 C 0.05 1.04 6.45 -2.83 -0.02 1.02 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 26 H 0.07 1.81 7.64 -51.93 -0.40 1.41 16 27 H 0.05 1.39 8.04 -51.93 -0.42 0.97 16 28 H 0.06 1.36 7.46 -51.93 -0.39 0.97 16 29 H 0.03 0.72 7.27 -51.93 -0.38 0.34 16 30 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 31 H 0.03 0.59 7.85 -51.93 -0.41 0.18 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 35 H 0.08 0.68 8.00 -51.93 -0.42 0.27 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.68 8.00 -51.93 -0.42 0.27 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.54 7.65 -51.93 -0.40 1.14 16 43 H 0.03 0.62 7.55 -51.93 -0.39 0.23 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -29.78 330.04 -10.58 -40.36 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.75 Total: -0.64 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.99 Total: -18.30 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.51 Total: -37.44 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.28 Total: -5.64 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.78 -10.58 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712391931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.519 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds