Wall clock time and date at job start Mon Mar 30 2020 06:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.62686 * 300.70099 * 9 7 2 11 11 C 1.55136 * 110.70530 * 63.80809 * 9 7 2 12 12 C 1.55115 * 101.56085 * 153.90587 * 11 9 7 13 13 N 1.47850 * 104.90239 * 323.15407 * 12 11 9 14 14 C 1.46900 * 110.99863 * 146.23898 * 13 12 11 15 15 C 1.53007 * 109.46866 * 69.15899 * 14 13 12 16 16 H 1.08998 * 110.26414 * 60.61718 * 15 14 13 17 17 C 1.55001 * 110.29839 * 182.79365 * 15 14 13 18 18 C 1.55436 * 101.01028 * 155.05060 * 17 15 14 19 19 C 1.53853 * 102.05173 * 326.33089 * 18 17 15 20 20 C 1.53191 * 114.62457 * 151.44716 * 19 18 17 21 21 C 1.53893 * 86.91503 * 90.96411 * 20 19 18 22 22 C 1.53209 * 114.59106 * 250.69163 * 19 18 17 23 23 O 1.42624 * 108.26782 * 21.03079 * 19 18 17 24 24 C 1.47446 * 108.56630 * 23.97526 * 13 12 11 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09006 * 110.98742 * 272.12473 * 11 9 7 27 27 H 1.09001 * 110.99522 * 35.94090 * 11 9 7 28 28 H 1.09002 * 110.42726 * 204.23869 * 12 11 9 29 29 H 1.08998 * 110.30993 * 82.01256 * 12 11 9 30 30 H 1.09003 * 109.47060 * 189.15822 * 14 13 12 31 31 H 1.08997 * 109.47085 * 309.16201 * 14 13 12 32 32 H 1.08994 * 111.11247 * 272.98835 * 17 15 14 33 33 H 1.09003 * 111.10690 * 37.11952 * 17 15 14 34 34 H 1.08999 * 110.91908 * 208.14198 * 18 17 15 35 35 H 1.09007 * 110.94469 * 84.53574 * 18 17 15 36 36 H 1.08999 * 113.64041 * 205.46857 * 20 19 18 37 37 H 1.08993 * 113.64504 * 336.45569 * 20 19 18 38 38 H 1.08997 * 113.59680 * 270.42654 * 21 20 19 39 39 H 1.08997 * 113.59437 * 139.57361 * 21 20 19 40 40 H 1.08993 * 113.63599 * 23.51033 * 22 19 18 41 41 H 1.08992 * 113.63987 * 154.40898 * 22 19 18 42 42 H 1.09000 * 109.88631 * 239.60587 * 24 13 12 43 43 H 1.09000 * 109.88841 * 118.41288 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6076 -2.5718 0.8751 11 6 0.4226 -2.6530 -1.3043 12 6 0.3220 -4.1959 -1.4283 13 7 1.6289 -4.7013 -0.9564 14 6 1.4775 -5.9905 -0.2687 15 6 1.0922 -7.0681 -1.2843 16 1 1.8693 -7.1679 -2.0420 17 6 0.8588 -8.4229 -0.5684 18 6 -0.1016 -9.1255 -1.5683 19 6 -0.9139 -7.9410 -2.1198 20 6 -1.4385 -8.1356 -3.5459 21 6 -2.7095 -8.7248 -2.9090 22 6 -2.3733 -7.8975 -1.6557 23 8 -0.1670 -6.7459 -1.9003 24 6 2.2273 -3.6927 -0.0627 25 1 -0.4849 0.8400 0.0004 26 1 -0.5639 -2.2022 -1.1951 27 1 0.9524 -2.2277 -2.1566 28 1 0.1561 -4.4841 -2.4664 29 1 -0.4818 -4.5746 -0.7970 30 1 2.4198 -6.2608 0.2080 31 1 0.6975 -5.9091 0.4882 32 1 1.7913 -8.9775 -0.4640 33 1 0.3798 -8.2778 0.3999 34 1 -0.7491 -9.8349 -1.0529 35 1 0.4569 -9.6185 -2.3641 36 1 -1.6102 -7.2009 -4.0798 37 1 -0.8658 -8.8579 -4.1276 38 1 -2.6578 -9.8016 -2.7479 39 1 -3.6297 -8.4137 -3.4033 40 1 -2.5505 -8.4289 -0.7207 41 1 -2.8045 -6.8965 -1.6624 42 1 3.1875 -3.3664 -0.4622 43 1 2.3614 -4.1134 0.9339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712391931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:02 Heat of formation + Delta-G solvation = -45.468981 kcal Electronic energy + Delta-G solvation = -20996.787336 eV Core-core repulsion = 18041.256547 eV Total energy + Delta-G solvation = -2955.530790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41357 -39.64767 -37.38380 -35.05733 -33.27619 -32.31800 -29.97200 -29.12045 -26.67592 -26.39641 -25.06409 -23.32224 -22.27485 -21.52889 -21.25232 -19.75101 -18.58059 -17.71246 -16.98126 -16.78849 -16.43761 -15.88920 -15.79304 -15.21223 -14.67343 -14.49938 -14.18610 -13.95113 -13.87943 -13.28415 -13.02982 -12.98438 -12.91157 -12.83330 -12.65849 -12.63288 -12.41019 -12.21320 -11.95044 -11.81206 -11.54836 -11.49019 -11.43539 -11.18298 -11.08535 -10.90296 -10.48689 -10.20069 -9.14084 -8.13973 -6.24688 1.41182 1.43592 1.51056 2.42778 2.88304 3.16324 3.19378 3.55750 3.65201 3.72202 3.92426 3.97725 4.05702 4.15195 4.19478 4.30238 4.46227 4.51230 4.58957 4.60780 4.67943 4.72518 4.83187 4.85650 4.90497 4.95009 4.98956 5.01217 5.03748 5.07049 5.10618 5.24773 5.28329 5.37292 5.43209 5.48437 5.57242 5.71188 5.87110 6.17562 6.29573 6.34238 6.42362 6.83978 7.42851 8.95465 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036470 B = 0.004208 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.566036 B = 6653.000082 C = 7139.220613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.026 3.974 10 H -0.005 1.005 11 C -0.099 4.099 12 C 0.078 3.922 13 N -0.533 5.533 14 C 0.052 3.948 15 C 0.085 3.915 16 H 0.073 0.927 17 C -0.142 4.142 18 C -0.119 4.119 19 C 0.065 3.935 20 C -0.144 4.144 21 C -0.125 4.125 22 C -0.147 4.147 23 O -0.379 6.379 24 C 0.058 3.942 25 H 0.261 0.739 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.097 0.903 31 H 0.024 0.976 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -21.381 -3.545 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.007 3.993 10 H 0.013 0.987 11 C -0.138 4.138 12 C -0.050 4.050 13 N -0.257 5.257 14 C -0.077 4.077 15 C 0.027 3.973 16 H 0.090 0.910 17 C -0.180 4.180 18 C -0.157 4.157 19 C 0.025 3.975 20 C -0.181 4.181 21 C -0.162 4.162 22 C -0.185 4.185 23 O -0.298 6.298 24 C -0.069 4.069 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.115 0.885 31 H 0.042 0.958 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.592 -21.154 -4.013 21.591 hybrid contribution -0.366 1.472 0.828 1.728 sum -1.958 -19.683 -3.185 20.035 Atomic orbital electron populations 1.70100 1.07445 1.27369 1.51160 1.25819 0.95682 1.02678 0.94575 0.85596 0.78339 0.78654 0.78988 1.19526 1.20994 1.19337 1.21427 0.93038 0.91569 1.50994 0.92400 1.19770 0.93216 0.93351 0.92942 0.98731 1.22490 0.99225 0.93573 0.98542 1.22759 0.89252 0.93546 0.99413 1.63582 1.22424 1.03024 1.36647 1.22556 1.00705 0.89713 0.94680 1.23061 0.86588 0.93601 0.94010 0.90958 1.23281 1.01442 0.94357 0.98940 1.22822 0.97606 0.96201 0.99036 1.23479 0.91677 0.85742 0.96584 1.23301 0.97813 1.01121 0.95910 1.22679 0.97552 1.00239 0.95752 1.23297 0.95359 1.00495 0.99337 1.88536 1.30023 1.30506 1.80766 1.22780 0.98468 0.91779 0.93890 0.93057 0.93928 0.94457 0.91276 0.95356 0.88455 0.95789 0.87654 0.90603 0.88255 0.89024 0.91276 0.89934 0.87951 0.90622 0.90401 0.91690 0.91759 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.67 12.28 21.45 0.26 -55.41 16 2 C 0.01 0.64 5.34 84.66 0.45 1.10 16 3 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.53 -30.59 8.48 25.60 0.22 -30.38 16 8 H 0.06 3.22 7.55 -2.91 -0.02 3.20 16 9 C 0.03 1.42 2.82 -10.36 -0.03 1.39 16 10 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 11 C -0.10 -5.16 5.86 32.05 0.19 -4.97 16 12 C 0.08 3.39 5.05 86.85 0.44 3.83 16 13 N -0.53 -21.38 5.16 -885.06 -4.57 -25.95 16 14 C 0.05 1.64 4.46 86.31 0.39 2.03 16 15 C 0.08 2.26 3.69 31.28 0.12 2.38 16 16 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 17 C -0.14 -2.59 6.58 32.12 0.21 -2.38 16 18 C -0.12 -1.92 6.13 31.72 0.19 -1.72 16 19 C 0.06 1.45 1.65 -10.37 -0.02 1.44 16 20 C -0.14 -2.89 7.60 30.96 0.24 -2.65 16 21 C -0.12 -2.02 7.88 31.19 0.25 -1.78 16 22 C -0.15 -3.13 7.51 30.96 0.23 -2.90 16 23 O -0.38 -11.60 8.00 -148.98 -1.19 -12.79 16 24 C 0.06 2.59 6.45 86.65 0.56 3.15 16 25 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 26 H 0.04 2.37 7.64 -2.38 -0.02 2.36 16 27 H 0.04 2.00 8.04 -2.39 -0.02 1.99 16 28 H 0.07 2.96 7.46 -2.39 -0.02 2.94 16 29 H 0.03 1.25 7.27 -2.39 -0.02 1.24 16 30 H 0.10 2.65 8.03 -2.39 -0.02 2.63 16 31 H 0.02 0.81 7.85 -2.39 -0.02 0.79 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.42 8.05 -2.39 -0.02 1.40 16 34 H 0.10 1.22 7.85 -2.39 -0.02 1.20 16 35 H 0.09 1.24 8.00 -2.38 -0.02 1.22 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.38 8.00 -2.39 -0.02 1.36 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.45 8.00 -2.39 -0.02 1.43 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 2.90 7.65 -2.39 -0.02 2.88 16 43 H 0.04 1.84 7.55 -2.39 -0.02 1.82 16 Total: -1.00 -65.63 330.04 0.91 -64.73 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.95 Total: 14.02 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 3.43 Total: -31.46 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -4.31 Total: -81.36 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.19 Total: -12.79 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.63 0.91 -64.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712391931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.257 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds