Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48504 * 109.46857 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46952 * 299.99918 * 3 2 1 6 6 H 1.48499 * 109.47281 * 60.00220 * 3 2 1 7 7 C 1.37877 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99781 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.27338 * 302.08626 * 9 7 2 11 11 C 1.54594 * 110.39549 * 64.23084 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.91819 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 H 1.09004 * 109.82297 * 305.69994 * 15 14 13 17 17 C 1.54456 * 109.83159 * 184.81164 * 15 14 13 18 18 C 1.55615 * 102.28777 * 219.18791 * 17 15 14 19 19 C 1.54085 * 100.84788 * 33.10371 * 18 17 15 20 20 C 1.52882 * 115.01827 * 94.68644 * 19 18 17 21 21 C 1.53941 * 86.81412 * 91.88199 * 20 19 18 22 22 C 1.52866 * 115.03993 * 194.80191 * 19 18 17 23 23 O 1.42643 * 106.36326 * 324.77686 * 19 18 17 24 24 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 25 25 H 0.97007 * 120.00051 * 359.97438 * 1 2 3 26 26 H 1.08999 * 110.72754 * 259.27718 * 11 9 7 27 27 H 1.08999 * 110.72080 * 22.56098 * 11 9 7 28 28 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 29 29 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 30 30 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 31 31 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 32 32 H 1.09003 * 110.82691 * 337.34799 * 17 15 14 33 33 H 1.08997 * 110.82927 * 100.91436 * 17 15 14 34 34 H 1.08994 * 111.08168 * 275.21907 * 18 17 15 35 35 H 1.09002 * 111.20956 * 151.04091 * 18 17 15 36 36 H 1.08996 * 113.66121 * 206.36592 * 20 19 18 37 37 H 1.09004 * 113.65747 * 337.40489 * 20 19 18 38 38 H 1.08999 * 113.59050 * 270.17560 * 21 20 19 39 39 H 1.08996 * 113.66129 * 139.35771 * 21 20 19 40 40 H 1.08992 * 113.66057 * 22.61994 * 22 19 18 41 41 H 1.09008 * 113.65596 * 153.65740 * 22 19 18 42 42 H 1.09002 * 109.91668 * 215.45268 * 24 13 12 43 43 H 1.09002 * 109.91761 * 94.35443 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4366 -2.6498 -1.3070 12 6 0.6010 -4.1526 -1.6464 13 7 2.0061 -4.4424 -1.2513 14 6 2.2119 -5.8813 -1.0388 15 6 1.7301 -6.6525 -2.2692 16 1 0.6980 -6.3831 -2.4937 17 6 1.8301 -8.1715 -2.0078 18 6 2.3245 -8.7120 -3.3808 19 6 3.2040 -7.5389 -3.8546 20 6 4.6918 -7.6739 -3.5297 21 6 4.8456 -8.3348 -4.9115 22 6 3.5794 -7.5690 -5.3362 23 8 2.5683 -6.3482 -3.3934 24 6 2.2344 -3.6841 -0.0021 25 1 -0.4850 0.8401 0.0004 26 1 -0.6120 -2.4051 -1.1379 27 1 0.8563 -2.0277 -2.0975 28 1 -0.0926 -4.7571 -1.0620 29 1 0.4576 -4.3240 -2.7133 30 1 3.2722 -6.0770 -0.8793 31 1 1.6473 -6.2037 -0.1638 32 1 2.5574 -8.3828 -1.2238 33 1 0.8544 -8.5864 -1.7549 34 1 1.4890 -8.8770 -4.0610 35 1 2.9137 -9.6208 -3.2579 36 1 5.2087 -6.7184 -3.4419 37 1 4.8984 -8.3469 -2.6976 38 1 4.7157 -9.4169 -4.8944 39 1 5.7429 -8.0250 -5.4471 40 1 2.8968 -8.1580 -5.9485 41 1 3.7841 -6.5839 -5.7556 42 1 3.2599 -3.3156 0.0265 43 1 2.0456 -4.3236 0.8603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712391936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = -25.349665 kcal Electronic energy + Delta-G solvation = -20871.706215 eV Core-core repulsion = 17917.047865 eV Total energy + Delta-G solvation = -2954.658351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54720 -38.06726 -36.29913 -33.16300 -32.12009 -30.76741 -28.17258 -27.77536 -25.84131 -24.68311 -23.66636 -22.52362 -21.37166 -19.70868 -19.21301 -18.87254 -16.65208 -16.39603 -16.09927 -15.32151 -15.13664 -14.41911 -14.29540 -14.12053 -13.45527 -13.01054 -12.98540 -12.49207 -12.34325 -12.20724 -12.00656 -11.75624 -11.44849 -11.22758 -11.13341 -11.09087 -10.88324 -10.84710 -10.59544 -10.47724 -10.38832 -10.30691 -10.09316 -9.57659 -9.28740 -9.08109 -8.70272 -8.33398 -7.55579 -5.94707 -3.95820 3.35275 3.43032 3.48009 3.81034 4.34528 4.47650 4.50627 4.54147 4.63538 4.70904 4.84293 5.02083 5.10957 5.27947 5.38597 5.47763 5.54436 5.55487 5.60844 5.68038 5.72040 5.77022 5.80654 5.87745 5.95333 5.96964 6.10419 6.18694 6.26215 6.28977 6.36250 6.41459 6.67598 6.95998 7.21651 7.29678 7.34208 7.55660 7.73179 7.92418 7.98488 8.11104 8.52389 9.05780 9.67210 11.15570 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032584 B = 0.004135 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.121227 B = 6769.469797 C = 7130.603492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.091 4.091 12 C 0.029 3.971 13 N -0.505 5.505 14 C 0.040 3.960 15 C 0.083 3.917 16 H 0.080 0.920 17 C -0.150 4.150 18 C -0.129 4.129 19 C 0.080 3.920 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.129 4.129 23 O -0.337 6.337 24 C 0.044 3.956 25 H 0.258 0.742 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 -19.001 -7.012 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.129 4.129 12 C -0.098 4.098 13 N -0.229 5.229 14 C -0.089 4.089 15 C 0.025 3.975 16 H 0.098 0.902 17 C -0.188 4.188 18 C -0.167 4.167 19 C 0.040 3.960 20 C -0.186 4.186 21 C -0.178 4.178 22 C -0.166 4.166 23 O -0.256 6.256 24 C -0.084 4.084 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.712 -18.516 -7.491 20.522 hybrid contribution -0.196 0.448 0.832 0.965 sum 4.516 -18.068 -6.659 19.779 Atomic orbital electron populations 1.69981 1.05888 1.26249 1.51006 1.24979 0.94841 0.99030 0.95267 0.86563 0.80241 0.83947 0.77423 1.19766 1.21096 1.21200 1.21229 0.92778 0.90192 1.50068 0.92447 1.19496 0.92496 0.91965 0.93982 0.95327 1.22382 1.00058 0.90704 0.99788 1.23397 0.88272 0.99141 0.99034 1.64822 1.23179 1.04570 1.30372 1.22635 1.01002 0.90372 0.94875 1.22887 0.94921 0.92724 0.86987 0.90223 1.23207 1.02384 0.95439 0.97788 1.22919 0.99370 0.97713 0.96701 1.23079 0.92191 0.85594 0.95167 1.23333 0.96612 1.01581 0.97094 1.22728 0.98342 0.99344 0.97372 1.23043 0.97127 1.01360 0.95088 1.88510 1.61196 1.29416 1.46477 1.23115 1.01834 0.95487 0.87921 0.93234 0.92423 0.92012 0.95700 0.91667 0.91030 0.94686 0.90451 0.90182 0.90277 0.90124 0.89052 0.91511 0.90322 0.90973 0.91167 0.89114 0.91243 0.96500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 12.63 55.43 0.70 -25.45 16 2 C 0.06 1.70 5.34 -17.82 -0.10 1.61 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.50 -14.27 8.38 -34.44 -0.29 -14.56 16 8 H 0.06 1.62 7.34 -52.49 -0.39 1.24 16 9 C 0.04 1.02 2.86 -90.42 -0.26 0.76 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -2.21 5.75 -24.87 -0.14 -2.36 16 12 C 0.03 0.59 5.11 -1.74 -0.01 0.58 16 13 N -0.51 -10.36 5.38 -230.20 -1.24 -11.60 16 14 C 0.04 0.66 4.57 -3.82 -0.02 0.64 16 15 C 0.08 1.19 3.27 -25.97 -0.08 1.10 16 16 H 0.08 1.19 6.53 -51.93 -0.34 0.85 16 17 C -0.15 -1.59 6.57 -24.58 -0.16 -1.75 16 18 C -0.13 -1.25 6.21 -24.77 -0.15 -1.41 16 19 C 0.08 0.95 1.45 -90.19 -0.13 0.82 16 20 C -0.15 -1.62 7.58 -26.30 -0.20 -1.82 16 21 C -0.14 -1.24 7.90 -25.75 -0.20 -1.45 16 22 C -0.13 -1.34 7.64 -26.30 -0.20 -1.55 16 23 O -0.34 -5.38 10.79 -35.23 -0.38 -5.76 16 24 C 0.04 0.98 6.34 -2.75 -0.02 0.96 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.06 1.45 8.12 -51.93 -0.42 1.03 16 27 H 0.06 1.63 7.86 -51.93 -0.41 1.23 16 28 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 29 H 0.06 1.27 7.57 -51.93 -0.39 0.88 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.55 7.81 -51.92 -0.41 0.15 16 32 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 42 H 0.07 1.60 7.39 -51.93 -0.38 1.22 16 43 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -30.20 332.39 -10.62 -40.82 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.73 Total: -1.44 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -1.96 Total: -18.40 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.54 Total: -37.05 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.38 Total: -5.76 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.20 -10.62 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712391936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.473 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds