Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48504 * 109.46857 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46952 * 299.99918 * 3 2 1 6 6 H 1.48499 * 109.47281 * 60.00220 * 3 2 1 7 7 C 1.37877 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99781 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.27338 * 302.08626 * 9 7 2 11 11 C 1.54594 * 110.39549 * 64.23084 * 9 7 2 12 12 C 1.54933 * 102.91997 * 140.91819 * 11 9 7 13 13 N 1.48813 * 103.35205 * 322.69117 * 12 11 9 14 14 C 1.46897 * 111.18681 * 159.50572 * 13 12 11 15 15 C 1.53003 * 109.47175 * 52.66416 * 14 13 12 16 16 H 1.09004 * 109.82297 * 305.69994 * 15 14 13 17 17 C 1.54456 * 109.83159 * 184.81164 * 15 14 13 18 18 C 1.55615 * 102.28777 * 219.18791 * 17 15 14 19 19 C 1.54085 * 100.84788 * 33.10371 * 18 17 15 20 20 C 1.52882 * 115.01827 * 94.68644 * 19 18 17 21 21 C 1.53941 * 86.81412 * 91.88199 * 20 19 18 22 22 C 1.52866 * 115.03993 * 194.80191 * 19 18 17 23 23 O 1.42643 * 106.36326 * 324.77686 * 19 18 17 24 24 C 1.47905 * 105.67450 * 38.97719 * 13 12 11 25 25 H 0.97007 * 120.00051 * 359.97438 * 1 2 3 26 26 H 1.08999 * 110.72754 * 259.27718 * 11 9 7 27 27 H 1.08999 * 110.72080 * 22.56098 * 11 9 7 28 28 H 1.08998 * 110.66828 * 81.02294 * 12 11 9 29 29 H 1.09004 * 110.66649 * 204.15215 * 12 11 9 30 30 H 1.09000 * 109.47143 * 172.66998 * 14 13 12 31 31 H 1.09011 * 109.46966 * 292.66611 * 14 13 12 32 32 H 1.09003 * 110.82691 * 337.34799 * 17 15 14 33 33 H 1.08997 * 110.82927 * 100.91436 * 17 15 14 34 34 H 1.08994 * 111.08168 * 275.21907 * 18 17 15 35 35 H 1.09002 * 111.20956 * 151.04091 * 18 17 15 36 36 H 1.08996 * 113.66121 * 206.36592 * 20 19 18 37 37 H 1.09004 * 113.65747 * 337.40489 * 20 19 18 38 38 H 1.08999 * 113.59050 * 270.17560 * 21 20 19 39 39 H 1.08996 * 113.66129 * 139.35771 * 21 20 19 40 40 H 1.08992 * 113.66057 * 22.61994 * 22 19 18 41 41 H 1.09008 * 113.65596 * 153.65740 * 22 19 18 42 42 H 1.09002 * 109.91668 * 215.45268 * 24 13 12 43 43 H 1.09002 * 109.91761 * 94.35443 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.5914 -2.5552 0.8643 11 6 0.4366 -2.6498 -1.3070 12 6 0.6010 -4.1526 -1.6464 13 7 2.0061 -4.4424 -1.2513 14 6 2.2119 -5.8813 -1.0388 15 6 1.7301 -6.6525 -2.2692 16 1 0.6980 -6.3831 -2.4937 17 6 1.8301 -8.1715 -2.0078 18 6 2.3245 -8.7120 -3.3808 19 6 3.2040 -7.5389 -3.8546 20 6 4.6918 -7.6739 -3.5297 21 6 4.8456 -8.3348 -4.9115 22 6 3.5794 -7.5690 -5.3362 23 8 2.5683 -6.3482 -3.3934 24 6 2.2344 -3.6841 -0.0021 25 1 -0.4850 0.8401 0.0004 26 1 -0.6120 -2.4051 -1.1379 27 1 0.8563 -2.0277 -2.0975 28 1 -0.0926 -4.7571 -1.0620 29 1 0.4576 -4.3240 -2.7133 30 1 3.2722 -6.0770 -0.8793 31 1 1.6473 -6.2037 -0.1638 32 1 2.5574 -8.3828 -1.2238 33 1 0.8544 -8.5864 -1.7549 34 1 1.4890 -8.8770 -4.0610 35 1 2.9137 -9.6208 -3.2579 36 1 5.2087 -6.7184 -3.4419 37 1 4.8984 -8.3469 -2.6976 38 1 4.7157 -9.4169 -4.8944 39 1 5.7429 -8.0250 -5.4471 40 1 2.8968 -8.1580 -5.9485 41 1 3.7841 -6.5839 -5.7556 42 1 3.2599 -3.3156 0.0265 43 1 2.0456 -4.3236 0.8603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712391936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = -43.946243 kcal Electronic energy + Delta-G solvation = -20872.512623 eV Core-core repulsion = 17917.047865 eV Total energy + Delta-G solvation = -2955.464759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47893 -39.67360 -37.37931 -35.09752 -33.26267 -32.33934 -30.01347 -29.14066 -26.68559 -26.36504 -25.09356 -23.46191 -22.62292 -21.29754 -21.04548 -19.74293 -18.59172 -17.61397 -17.02824 -16.79658 -16.39383 -16.17494 -15.80450 -15.32507 -14.66591 -14.54546 -14.16161 -13.92982 -13.83328 -13.29429 -13.12975 -13.02233 -12.81793 -12.76133 -12.64745 -12.51362 -12.32412 -12.17552 -12.02851 -11.87128 -11.74847 -11.57498 -11.36912 -11.14394 -11.10770 -10.83007 -10.50979 -10.20008 -9.16637 -8.13715 -6.22122 1.39415 1.41173 1.53235 2.43360 2.84175 3.16781 3.26964 3.53416 3.68226 3.70148 3.80985 3.92552 4.08899 4.14515 4.18241 4.33589 4.38291 4.46437 4.48827 4.55597 4.64999 4.68092 4.82822 4.86154 4.87739 4.89556 4.94729 4.98608 5.02117 5.07879 5.13184 5.22030 5.25079 5.35705 5.38970 5.51646 5.54660 5.71221 5.83589 6.17137 6.25244 6.37233 6.47712 6.85745 7.44385 8.96255 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.032584 B = 0.004135 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.121227 B = 6769.469797 C = 7130.603492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.051 0.949 9 C 0.031 3.969 10 H 0.003 0.997 11 C -0.084 4.084 12 C 0.047 3.953 13 N -0.521 5.521 14 C 0.041 3.959 15 C 0.080 3.920 16 H 0.072 0.928 17 C -0.143 4.143 18 C -0.120 4.120 19 C 0.063 3.937 20 C -0.153 4.153 21 C -0.125 4.125 22 C -0.133 4.133 23 O -0.374 6.374 24 C 0.055 3.945 25 H 0.261 0.739 26 H 0.041 0.959 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 -21.220 -7.401 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.012 3.988 10 H 0.021 0.979 11 C -0.122 4.122 12 C -0.081 4.081 13 N -0.245 5.245 14 C -0.087 4.087 15 C 0.023 3.977 16 H 0.090 0.910 17 C -0.181 4.181 18 C -0.157 4.157 19 C 0.024 3.976 20 C -0.191 4.191 21 C -0.162 4.162 22 C -0.171 4.171 23 O -0.293 6.293 24 C -0.072 4.072 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.322 -20.754 -7.883 22.829 hybrid contribution -0.374 1.144 0.945 1.530 sum 4.948 -19.610 -6.938 21.381 Atomic orbital electron populations 1.70090 1.07190 1.27186 1.51493 1.25755 0.95720 1.02426 0.94809 0.85541 0.79045 0.79654 0.77645 1.19281 1.20683 1.20305 1.21537 0.92736 0.91750 1.50391 0.93089 1.19481 0.92986 0.92840 0.93471 0.97877 1.22151 0.98472 0.93382 0.98228 1.23197 0.88870 0.96114 0.99871 1.64751 1.23050 1.07314 1.29412 1.22733 1.01412 0.87841 0.96753 1.22890 0.94072 0.95051 0.85730 0.91034 1.23193 1.03808 0.92396 0.98656 1.22929 0.99379 0.97484 0.95950 1.23487 0.92736 0.85443 0.95973 1.23315 0.95919 1.00963 0.98931 1.22714 0.97641 1.00343 0.95487 1.23067 0.98473 1.00971 0.94580 1.88477 1.61757 1.32063 1.47023 1.22853 0.99967 0.94765 0.89648 0.93050 0.93993 0.94903 0.93862 0.90738 0.90954 0.93362 0.89685 0.88299 0.89528 0.87653 0.91531 0.90295 0.87906 0.90482 0.89669 0.91103 0.92468 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.09 12.63 21.45 0.27 -54.82 16 2 C 0.01 0.66 5.34 84.66 0.45 1.11 16 3 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.53 -30.55 8.38 25.60 0.21 -30.34 16 8 H 0.05 2.95 7.34 -2.91 -0.02 2.93 16 9 C 0.03 1.66 2.86 -10.66 -0.03 1.63 16 10 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 11 C -0.08 -4.21 5.75 31.80 0.18 -4.02 16 12 C 0.05 1.90 5.11 86.59 0.44 2.35 16 13 N -0.52 -21.21 5.38 -882.22 -4.74 -25.95 16 14 C 0.04 1.29 4.57 86.30 0.39 1.68 16 15 C 0.08 2.17 3.27 31.09 0.10 2.28 16 16 H 0.07 2.02 6.53 -2.38 -0.02 2.01 16 17 C -0.14 -2.57 6.57 31.99 0.21 -2.36 16 18 C -0.12 -1.91 6.21 31.86 0.20 -1.71 16 19 C 0.06 1.39 1.45 -10.52 -0.02 1.38 16 20 C -0.15 -3.10 7.58 30.87 0.23 -2.87 16 21 C -0.12 -1.89 7.90 31.23 0.25 -1.64 16 22 C -0.13 -2.58 7.64 30.87 0.24 -2.35 16 23 O -0.37 -11.65 10.79 -148.98 -1.61 -13.25 16 24 C 0.06 2.49 6.34 86.44 0.55 3.04 16 25 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 26 H 0.04 2.18 8.12 -2.39 -0.02 2.16 16 27 H 0.03 1.79 7.86 -2.39 -0.02 1.77 16 28 H 0.04 1.60 8.01 -2.39 -0.02 1.58 16 29 H 0.07 2.89 7.57 -2.38 -0.02 2.87 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 1.40 7.81 -2.38 -0.02 1.38 16 32 H 0.08 1.41 7.85 -2.39 -0.02 1.39 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.18 8.04 -2.39 -0.02 1.16 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.36 8.11 -2.38 -0.02 1.34 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.36 8.11 -2.39 -0.02 1.34 16 41 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.06 2.68 7.39 -2.39 -0.02 2.66 16 43 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 Total: -1.00 -66.52 332.39 0.31 -66.20 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.95 Total: 12.22 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 3.42 Total: -31.83 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -4.47 Total: -80.77 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.61 Total: -13.25 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -66.52 0.31 -66.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712391936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.259 kcal (2) G-P(sol) polarization free energy of solvation -66.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds