Wall clock time and date at job start Mon Mar 30 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00410 * 2 1 4 4 H 1.48504 * 109.47409 * 270.00122 * 3 2 1 5 5 H 1.48500 * 109.47104 * 30.00014 * 3 2 1 6 6 H 1.48503 * 109.47801 * 149.99979 * 3 2 1 7 7 C 1.37884 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99697 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00118 * 179.97438 * 7 2 1 10 10 N 1.46906 * 109.46787 * 180.02562 * 9 7 2 11 11 C 1.46893 * 110.99744 * 180.02562 * 10 9 7 12 12 H 1.09008 * 112.85897 * 23.93657 * 11 10 9 13 13 C 1.53782 * 113.55538 * 252.87559 * 11 10 9 14 14 H 1.09000 * 116.77880 * 340.08955 * 13 11 10 15 15 C 1.54470 * 112.90389 * 117.23573 * 13 11 10 16 16 C 1.54457 * 104.13665 * 93.18910 * 15 13 11 17 17 O 1.44377 * 104.80351 * 335.76312 * 16 15 13 18 18 C 1.44252 * 105.43916 * 40.56807 * 17 16 15 19 19 H 1.08998 * 114.88437 * 89.95454 * 18 17 16 20 20 C 1.53263 * 113.55196 * 226.55297 * 18 17 16 21 21 C 1.52794 * 113.49806 * 195.26364 * 20 18 17 22 22 C 1.53123 * 109.26589 * 74.57431 * 21 20 18 23 23 C 1.52974 * 109.42900 * 57.93274 * 22 21 20 24 24 C 1.52979 * 109.62392 * 298.29805 * 23 22 21 25 25 C 1.52781 * 113.53095 * 325.83643 * 20 18 17 26 26 H 0.97000 * 120.00143 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46606 * 60.00719 * 9 7 2 28 28 H 1.08993 * 109.47345 * 300.00572 * 9 7 2 29 29 H 1.00896 * 110.99646 * 56.04828 * 10 9 7 30 30 H 1.09004 * 110.49594 * 334.53199 * 15 13 11 31 31 H 1.08994 * 110.61038 * 211.90991 * 15 13 11 32 32 H 1.08998 * 110.37303 * 216.93163 * 16 15 13 33 33 H 1.08996 * 110.46573 * 94.64609 * 16 15 13 34 34 H 1.08996 * 109.50530 * 314.63505 * 21 20 18 35 35 H 1.09003 * 109.53329 * 194.52858 * 21 20 18 36 36 H 1.09007 * 109.48047 * 297.94013 * 22 21 20 37 37 H 1.09007 * 109.48284 * 177.92563 * 22 21 20 38 38 H 1.09002 * 109.44060 * 58.33649 * 23 22 21 39 39 H 1.08999 * 109.44467 * 178.26053 * 23 22 21 40 40 H 1.09004 * 109.47500 * 181.66830 * 24 23 22 41 41 H 1.09000 * 109.47540 * 301.68391 * 24 23 22 42 42 H 1.08996 * 109.50089 * 45.36272 * 25 20 18 43 43 H 1.08998 * 109.50241 * 165.48150 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5792 0.0001 11 6 5.4696 -2.6184 0.0001 12 1 5.9174 -1.7119 0.4076 13 6 6.0729 -3.0498 -1.3470 14 1 5.4158 -3.5894 -2.0291 15 6 6.9398 -1.9492 -1.9975 16 6 8.3724 -2.2607 -1.5114 17 8 8.1929 -2.9999 -0.2842 18 6 7.0875 -3.8930 -0.5320 19 1 7.3660 -4.8667 -0.9350 20 6 6.0482 -3.9082 0.5943 21 6 5.0884 -5.0949 0.5216 22 6 5.8183 -6.3633 0.9722 23 6 6.3510 -6.1665 2.3926 24 6 7.3543 -5.0118 2.4096 25 6 6.6527 -3.7197 1.9847 26 1 -0.4850 0.8400 -0.0004 27 1 3.8751 -0.6797 0.8896 28 1 3.8745 -0.6808 -0.8904 29 1 3.6253 -3.0955 -0.7810 30 1 6.6261 -0.9634 -1.6539 31 1 6.8840 -2.0092 -3.0844 32 1 8.9180 -1.3365 -1.3213 33 1 8.9006 -2.8680 -2.2464 34 1 4.7411 -5.2197 -0.5040 35 1 4.2352 -4.9141 1.1755 36 1 6.6499 -6.5637 0.2965 37 1 5.1265 -7.2057 0.9569 38 1 5.5222 -5.9369 3.0623 39 1 6.8437 -7.0801 2.7252 40 1 7.7545 -4.8929 3.4165 41 1 8.1687 -5.2278 1.7180 42 1 7.3754 -2.9042 1.9597 43 1 5.8616 -3.4840 2.6965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713486307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:07 Heat of formation + Delta-G solvation = -37.505622 kcal Electronic energy + Delta-G solvation = -21588.074639 eV Core-core repulsion = 18632.889167 eV Total energy + Delta-G solvation = -2955.185472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33194 -37.44172 -35.52541 -33.24879 -31.65510 -31.24520 -30.57392 -27.62033 -27.10267 -23.57102 -23.05430 -22.64511 -21.09426 -20.89732 -19.90988 -18.07910 -16.93037 -16.09608 -15.81357 -15.29623 -14.98410 -14.51470 -14.11429 -13.84212 -13.77630 -13.59697 -13.06643 -12.72119 -12.59094 -12.42715 -12.17020 -11.85755 -11.71865 -11.52185 -11.23779 -11.18864 -10.83659 -10.80085 -10.66927 -10.54704 -10.31388 -10.25049 -9.89479 -9.82613 -9.51260 -9.35237 -9.07538 -8.60323 -7.39591 -6.06431 -4.04049 3.27236 3.35318 3.38247 3.77326 4.41476 4.45242 4.62973 4.80445 4.88966 4.99917 5.05602 5.15513 5.19671 5.26790 5.29402 5.37345 5.47675 5.53874 5.60170 5.67836 5.71075 5.76674 5.79348 5.84650 5.87867 5.94726 6.10035 6.17352 6.21410 6.26579 6.29857 6.47694 6.49144 6.56898 6.67818 6.73948 6.80313 7.01260 7.04076 7.62148 7.92115 8.34690 8.64964 9.01738 9.55957 11.06930 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.006150 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.773202 B = 4552.048811 C = 5323.514160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.663 5.663 11 C 0.093 3.907 12 H 0.092 0.908 13 C -0.170 4.170 14 H 0.106 0.894 15 C -0.148 4.148 16 C 0.048 3.952 17 O -0.357 6.357 18 C 0.058 3.942 19 H 0.084 0.916 20 C -0.056 4.056 21 C -0.084 4.084 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.097 4.097 26 H 0.263 0.737 27 H 0.025 0.975 28 H -0.022 1.022 29 H 0.336 0.664 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.710 -9.429 -1.188 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.291 5.291 11 C -0.019 4.019 12 H 0.110 0.890 13 C -0.190 4.190 14 H 0.124 0.876 15 C -0.186 4.186 16 C -0.028 4.028 17 O -0.276 6.276 18 C -0.001 4.001 19 H 0.102 0.898 20 C -0.057 4.057 21 C -0.122 4.122 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.043 0.957 28 H -0.004 1.004 29 H 0.155 0.845 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.592 -9.325 -0.291 19.035 hybrid contribution 0.497 1.304 -1.284 1.897 sum 17.089 -8.021 -1.575 18.943 Atomic orbital electron populations 1.69896 1.06155 1.26844 1.51063 1.24901 0.94725 0.98913 0.94769 0.86839 0.80394 0.83965 0.78386 1.20422 1.21169 1.19167 1.21074 0.89018 0.94746 1.50479 0.90320 1.20019 0.96504 0.85168 0.94571 1.60348 1.03546 1.16371 1.48845 1.23008 0.89884 0.96979 0.92030 0.89036 1.24894 0.99065 0.97109 0.97957 0.87551 1.22896 0.94947 1.00016 1.00775 1.23429 0.96565 0.95994 0.86854 1.88988 1.51394 1.53779 1.33441 1.24002 0.85388 0.93000 0.97668 0.89812 1.21754 0.93613 0.96397 0.93934 1.21114 0.97634 0.91674 1.01752 1.21567 0.99629 0.97899 0.96548 1.21511 0.99022 0.97859 0.97188 1.21467 0.97947 0.95199 1.00494 1.21302 0.99452 0.97202 0.95517 0.92679 0.95689 1.00434 0.84511 0.90626 0.91067 0.89470 0.92757 0.92299 0.89686 0.92695 0.92294 0.91908 0.92839 0.92711 0.92327 0.91554 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.63 9.87 -34.44 -0.34 -14.97 16 8 H 0.08 2.42 8.06 -52.48 -0.42 1.99 16 9 C 0.17 3.97 4.35 -4.97 -0.02 3.95 16 10 N -0.66 -13.22 5.64 -107.37 -0.61 -13.83 16 11 C 0.09 1.55 2.92 -67.13 -0.20 1.35 16 12 H 0.09 1.68 7.59 -51.92 -0.39 1.29 16 13 C -0.17 -2.38 4.20 -88.35 -0.37 -2.75 16 14 H 0.11 1.43 7.78 -51.93 -0.40 1.03 16 15 C -0.15 -1.90 6.64 -25.20 -0.17 -2.07 16 16 C 0.05 0.57 7.63 37.92 0.29 0.86 16 17 O -0.36 -5.03 10.05 -35.23 -0.35 -5.39 16 18 C 0.06 0.76 4.30 -25.50 -0.11 0.66 16 19 H 0.08 1.03 7.49 -51.93 -0.39 0.64 16 20 C -0.06 -0.79 0.69 -154.41 -0.11 -0.90 16 21 C -0.08 -1.13 4.24 -26.77 -0.11 -1.25 16 22 C -0.12 -1.35 5.84 -26.68 -0.16 -1.50 16 23 C -0.12 -1.33 5.87 -26.76 -0.16 -1.49 16 24 C -0.11 -1.36 5.84 -26.72 -0.16 -1.52 16 25 C -0.10 -1.38 4.94 -26.82 -0.13 -1.51 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.03 0.63 7.19 -51.93 -0.37 0.26 16 28 H -0.02 -0.53 7.57 -51.93 -0.39 -0.92 16 29 H 0.34 6.49 8.16 -39.29 -0.32 6.17 16 30 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.77 7.62 -51.93 -0.40 0.38 16 35 H 0.08 1.31 8.02 -51.93 -0.42 0.90 16 36 H 0.05 0.59 7.43 -51.93 -0.39 0.21 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.71 7.97 -51.93 -0.41 0.30 16 42 H 0.07 0.99 7.26 -51.93 -0.38 0.61 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -29.88 324.17 -9.45 -39.33 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.65 Total: 4.13 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.84 Total: -19.24 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.17 Total: -40.74 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.35 Total: -5.39 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.88 -9.45 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713486307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.823 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds