Wall clock time and date at job start Mon Mar 30 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00410 * 2 1 4 4 H 1.48504 * 109.47409 * 270.00122 * 3 2 1 5 5 H 1.48500 * 109.47104 * 30.00014 * 3 2 1 6 6 H 1.48503 * 109.47801 * 149.99979 * 3 2 1 7 7 C 1.37884 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99697 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00118 * 179.97438 * 7 2 1 10 10 N 1.46906 * 109.46787 * 180.02562 * 9 7 2 11 11 C 1.46893 * 110.99744 * 180.02562 * 10 9 7 12 12 H 1.09008 * 112.85897 * 23.93657 * 11 10 9 13 13 C 1.53782 * 113.55538 * 252.87559 * 11 10 9 14 14 H 1.09000 * 116.77880 * 340.08955 * 13 11 10 15 15 C 1.54470 * 112.90389 * 117.23573 * 13 11 10 16 16 C 1.54457 * 104.13665 * 93.18910 * 15 13 11 17 17 O 1.44377 * 104.80351 * 335.76312 * 16 15 13 18 18 C 1.44252 * 105.43916 * 40.56807 * 17 16 15 19 19 H 1.08998 * 114.88437 * 89.95454 * 18 17 16 20 20 C 1.53263 * 113.55196 * 226.55297 * 18 17 16 21 21 C 1.52794 * 113.49806 * 195.26364 * 20 18 17 22 22 C 1.53123 * 109.26589 * 74.57431 * 21 20 18 23 23 C 1.52974 * 109.42900 * 57.93274 * 22 21 20 24 24 C 1.52979 * 109.62392 * 298.29805 * 23 22 21 25 25 C 1.52781 * 113.53095 * 325.83643 * 20 18 17 26 26 H 0.97000 * 120.00143 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46606 * 60.00719 * 9 7 2 28 28 H 1.08993 * 109.47345 * 300.00572 * 9 7 2 29 29 H 1.00896 * 110.99646 * 56.04828 * 10 9 7 30 30 H 1.09004 * 110.49594 * 334.53199 * 15 13 11 31 31 H 1.08994 * 110.61038 * 211.90991 * 15 13 11 32 32 H 1.08998 * 110.37303 * 216.93163 * 16 15 13 33 33 H 1.08996 * 110.46573 * 94.64609 * 16 15 13 34 34 H 1.08996 * 109.50530 * 314.63505 * 21 20 18 35 35 H 1.09003 * 109.53329 * 194.52858 * 21 20 18 36 36 H 1.09007 * 109.48047 * 297.94013 * 22 21 20 37 37 H 1.09007 * 109.48284 * 177.92563 * 22 21 20 38 38 H 1.09002 * 109.44060 * 58.33649 * 23 22 21 39 39 H 1.08999 * 109.44467 * 178.26053 * 23 22 21 40 40 H 1.09004 * 109.47500 * 181.66830 * 24 23 22 41 41 H 1.09000 * 109.47540 * 301.68391 * 24 23 22 42 42 H 1.08996 * 109.50089 * 45.36272 * 25 20 18 43 43 H 1.08998 * 109.50241 * 165.48150 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5792 0.0001 11 6 5.4696 -2.6184 0.0001 12 1 5.9174 -1.7119 0.4076 13 6 6.0729 -3.0498 -1.3470 14 1 5.4158 -3.5894 -2.0291 15 6 6.9398 -1.9492 -1.9975 16 6 8.3724 -2.2607 -1.5114 17 8 8.1929 -2.9999 -0.2842 18 6 7.0875 -3.8930 -0.5320 19 1 7.3660 -4.8667 -0.9350 20 6 6.0482 -3.9082 0.5943 21 6 5.0884 -5.0949 0.5216 22 6 5.8183 -6.3633 0.9722 23 6 6.3510 -6.1665 2.3926 24 6 7.3543 -5.0118 2.4096 25 6 6.6527 -3.7197 1.9847 26 1 -0.4850 0.8400 -0.0004 27 1 3.8751 -0.6797 0.8896 28 1 3.8745 -0.6808 -0.8904 29 1 3.6253 -3.0955 -0.7810 30 1 6.6261 -0.9634 -1.6539 31 1 6.8840 -2.0092 -3.0844 32 1 8.9180 -1.3365 -1.3213 33 1 8.9006 -2.8680 -2.2464 34 1 4.7411 -5.2197 -0.5040 35 1 4.2352 -4.9141 1.1755 36 1 6.6499 -6.5637 0.2965 37 1 5.1265 -7.2057 0.9569 38 1 5.5222 -5.9369 3.0623 39 1 6.8437 -7.0801 2.7252 40 1 7.7545 -4.8929 3.4165 41 1 8.1687 -5.2278 1.7180 42 1 7.3754 -2.9042 1.9597 43 1 5.8616 -3.4840 2.6965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713486307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:07 Heat of formation + Delta-G solvation = -56.294378 kcal Electronic energy + Delta-G solvation = -21588.889381 eV Core-core repulsion = 18632.889167 eV Total energy + Delta-G solvation = -2956.000214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.46121 -38.45824 -36.97486 -35.03661 -33.47185 -32.25545 -31.60596 -29.11068 -28.57498 -24.94393 -24.07651 -23.88299 -22.76230 -22.00625 -21.02190 -19.39563 -18.75904 -17.40509 -16.96484 -16.58306 -16.17594 -15.99299 -15.54301 -15.22851 -15.02007 -14.73002 -14.48360 -14.20115 -13.94799 -13.77885 -13.61261 -13.14029 -12.91814 -12.79987 -12.72770 -12.41534 -12.19192 -12.14983 -11.86484 -11.85174 -11.64957 -11.51593 -11.44710 -11.24377 -10.91530 -10.83640 -10.58070 -10.30549 -8.98805 -8.32083 -6.35731 1.30323 1.33217 1.44073 2.31170 2.75296 3.01946 3.31961 3.42031 3.65244 3.77027 3.96706 4.01275 4.08204 4.24109 4.26235 4.35060 4.37790 4.48995 4.52788 4.56522 4.72706 4.73110 4.78364 4.79329 4.86065 4.88323 4.96024 4.98508 5.06709 5.11282 5.21045 5.26453 5.29322 5.41856 5.45103 5.49406 5.52546 5.58530 5.69260 5.93861 6.03149 6.58509 6.66569 6.78233 7.29448 8.84616 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.006150 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.773202 B = 4552.048811 C = 5323.514160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.525 4.525 8 H 0.040 0.960 9 C 0.180 3.820 10 N -0.668 5.668 11 C 0.079 3.921 12 H 0.071 0.929 13 C -0.167 4.167 14 H 0.115 0.885 15 C -0.149 4.149 16 C 0.049 3.951 17 O -0.375 6.375 18 C 0.072 3.928 19 H 0.107 0.893 20 C -0.053 4.053 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.107 4.107 25 C -0.097 4.097 26 H 0.267 0.733 27 H 0.015 0.985 28 H -0.018 1.018 29 H 0.339 0.661 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.366 -9.987 -2.062 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.563 4.563 8 H 0.058 0.942 9 C 0.051 3.949 10 N -0.296 5.296 11 C -0.032 4.032 12 H 0.089 0.911 13 C -0.187 4.187 14 H 0.133 0.867 15 C -0.187 4.187 16 C -0.028 4.028 17 O -0.295 6.295 18 C 0.014 3.986 19 H 0.124 0.876 20 C -0.054 4.054 21 C -0.119 4.119 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.144 4.144 25 C -0.135 4.135 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.000 1.000 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.272 -9.902 -1.167 21.698 hybrid contribution -0.380 1.431 -0.990 1.782 sum 18.892 -8.470 -2.158 20.816 Atomic orbital electron populations 1.70041 1.08038 1.28152 1.52387 1.25824 0.95588 1.03075 0.94256 0.85717 0.79218 0.78811 0.79175 1.18959 1.20540 1.18038 1.21339 0.91321 0.93439 1.50195 0.94196 1.19697 0.93605 0.87532 0.94027 1.60254 1.06081 1.13987 1.49321 1.23096 0.87477 0.97649 0.94963 0.91075 1.24831 0.99233 0.97831 0.96838 0.86741 1.22913 0.95454 0.98473 1.01863 1.23582 0.95975 0.96749 0.86463 1.88976 1.51343 1.54218 1.34914 1.23925 0.84855 0.93641 0.96158 0.87600 1.21745 0.94039 0.95163 0.94441 1.21061 0.96815 0.92638 1.01416 1.21543 1.00041 0.96768 0.96744 1.21516 0.98589 0.98383 0.97030 1.21418 0.97948 0.94054 1.01023 1.21272 0.98712 0.98323 0.95157 0.92360 0.96701 1.00031 0.84257 0.92459 0.89157 0.88442 0.90376 0.91941 0.92459 0.91224 0.91224 0.93057 0.90739 0.91925 0.91727 0.92623 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.61 5.47 84.66 0.46 1.07 16 3 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.63 6.54 99.48 0.65 -10.97 16 7 C -0.52 -30.77 9.87 25.60 0.25 -30.52 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 9 C 0.18 8.79 4.35 85.56 0.37 9.17 16 10 N -0.67 -27.25 5.64 -493.60 -2.78 -30.03 16 11 C 0.08 2.63 2.92 45.30 0.13 2.77 16 12 H 0.07 2.66 7.59 -2.38 -0.02 2.64 16 13 C -0.17 -4.40 4.20 -9.32 -0.04 -4.44 16 14 H 0.11 2.85 7.78 -2.39 -0.02 2.83 16 15 C -0.15 -3.50 6.64 31.59 0.21 -3.29 16 16 C 0.05 0.99 7.63 72.48 0.55 1.55 16 17 O -0.38 -9.68 10.05 -148.98 -1.50 -11.18 16 18 C 0.07 1.74 4.30 31.39 0.14 1.88 16 19 H 0.11 2.17 7.49 -2.39 -0.02 2.15 16 20 C -0.05 -1.46 0.69 -52.12 -0.04 -1.50 16 21 C -0.08 -2.13 4.24 30.57 0.13 -2.00 16 22 C -0.11 -2.31 5.84 30.63 0.18 -2.13 16 23 C -0.12 -2.40 5.87 30.58 0.18 -2.22 16 24 C -0.11 -2.37 5.84 30.60 0.18 -2.19 16 25 C -0.10 -2.72 4.94 30.54 0.15 -2.57 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.01 0.76 7.19 -2.39 -0.02 0.74 16 28 H -0.02 -0.86 7.57 -2.39 -0.02 -0.88 16 29 H 0.34 13.37 8.16 -89.70 -0.73 12.63 16 30 H 0.06 1.55 7.89 -2.38 -0.02 1.53 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.56 7.62 -2.39 -0.02 1.54 16 35 H 0.06 1.81 8.02 -2.39 -0.02 1.79 16 36 H 0.07 1.24 7.43 -2.38 -0.02 1.23 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.06 1.38 7.97 -2.39 -0.02 1.36 16 42 H 0.06 1.65 7.26 -2.39 -0.02 1.64 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -65.78 324.17 0.95 -64.83 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.18 Total: 23.25 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 2.86 Total: -34.43 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -2.49 Total: -89.31 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.50 Total: -11.18 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -65.78 0.95 -64.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713486307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.540 kcal (2) G-P(sol) polarization free energy of solvation -65.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds