Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48497 * 109.47137 * 270.00176 * 3 2 1 5 5 H 1.48505 * 109.46868 * 30.00157 * 3 2 1 6 6 H 1.48504 * 109.47152 * 149.99720 * 3 2 1 7 7 C 1.37878 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00241 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00293 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99558 * 180.02562 * 10 9 7 12 12 H 1.08994 * 113.54321 * 29.75925 * 11 10 9 13 13 C 1.50447 * 114.56792 * 255.49118 * 11 10 9 14 14 H 1.08996 * 114.31385 * 319.39851 * 13 11 10 15 15 C 1.51895 * 127.62106 * 113.83043 * 13 11 10 16 16 C 1.55778 * 102.18302 * 118.51394 * 15 13 11 17 17 O 1.46071 * 105.52248 * 353.62614 * 16 15 13 18 18 C 1.40082 * 103.56694 * 330.13251 * 17 16 15 19 19 H 1.09001 * 110.02358 * 293.59787 * 18 17 16 20 20 C 1.48617 * 134.87214 * 138.67340 * 18 17 16 21 21 C 1.52569 * 116.62179 * 335.26250 * 20 18 17 22 22 C 1.53139 * 109.30626 * 195.48107 * 21 20 18 23 23 C 1.52990 * 109.42137 * 302.40362 * 22 21 20 24 24 C 1.52980 * 109.64190 * 61.87329 * 23 22 21 25 25 C 1.52555 * 116.67891 * 113.58761 * 20 18 17 26 26 H 0.97004 * 119.99801 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46648 * 60.00194 * 9 7 2 28 28 H 1.08996 * 109.47032 * 300.00779 * 9 7 2 29 29 H 1.00896 * 111.00112 * 56.05039 * 10 9 7 30 30 H 1.08996 * 110.86491 * 0.34385 * 15 13 11 31 31 H 1.09003 * 111.03725 * 236.76125 * 15 13 11 32 32 H 1.09002 * 110.25215 * 112.66325 * 16 15 13 33 33 H 1.09002 * 110.25357 * 234.58658 * 16 15 13 34 34 H 1.09000 * 109.49801 * 315.43237 * 21 20 18 35 35 H 1.09002 * 109.50080 * 75.53011 * 21 20 18 36 36 H 1.09000 * 109.48560 * 182.41651 * 22 21 20 37 37 H 1.09007 * 109.48757 * 62.39022 * 22 21 20 38 38 H 1.09001 * 109.44004 * 301.82200 * 23 22 21 39 39 H 1.09001 * 109.40898 * 181.90857 * 23 22 21 40 40 H 1.08994 * 109.47945 * 178.15721 * 24 23 22 41 41 H 1.09000 * 109.48342 * 58.13548 * 24 23 22 42 42 H 1.08999 * 109.50083 * 284.51513 * 25 20 18 43 43 H 1.08999 * 109.49952 * 44.58423 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4697 -2.6182 0.0001 12 1 5.9280 -1.7626 0.4960 13 6 6.0859 -2.9776 -1.3245 14 1 5.5653 -3.7707 -1.8612 15 6 6.9373 -2.0952 -2.2209 16 6 8.2856 -2.8742 -2.2642 17 8 8.1330 -3.9728 -1.3137 18 6 7.2473 -3.4594 -0.3575 19 1 7.7188 -2.6408 0.1864 20 6 6.0821 -4.0003 0.3898 21 6 5.3358 -5.1637 -0.2563 22 6 3.9762 -5.3350 0.4272 23 6 4.1852 -5.5647 1.9252 24 6 4.8703 -4.3437 2.5420 25 6 6.2470 -4.1529 1.8987 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8745 -0.6807 -0.8904 29 1 3.6254 -3.0955 -0.7810 30 1 7.0733 -1.1085 -1.7784 31 1 6.5032 -2.0153 -3.2176 32 1 8.4640 -3.2643 -3.2662 33 1 9.1067 -2.2245 -1.9612 34 1 5.1869 -4.9567 -1.3160 35 1 5.9183 -6.0779 -0.1421 36 1 3.4584 -6.1922 -0.0031 37 1 3.3780 -4.4362 0.2773 38 1 4.8106 -6.4450 2.0735 39 1 3.2195 -5.7203 2.4061 40 1 4.9883 -4.4964 3.6147 41 1 4.2608 -3.4573 2.3659 42 1 6.8711 -5.0211 2.1106 43 1 6.7182 -3.2581 2.3055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713486309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = 40.854059 kcal Electronic energy + Delta-G solvation = -21871.105315 eV Core-core repulsion = 18919.317774 eV Total energy + Delta-G solvation = -2951.787542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.25357 -37.89673 -35.14426 -33.68128 -31.91302 -31.16803 -30.65318 -27.56423 -26.92127 -23.98007 -23.15414 -22.22589 -21.05654 -20.57043 -19.88022 -18.50921 -16.82752 -16.14220 -15.88983 -15.56603 -14.72408 -14.63397 -14.21510 -13.80152 -13.50412 -13.40127 -13.26144 -12.74984 -12.57493 -12.20020 -12.16331 -11.85546 -11.68102 -11.50309 -11.37400 -11.05201 -10.79204 -10.72109 -10.47600 -10.40760 -10.17155 -9.86921 -9.81696 -9.66251 -9.52668 -9.30140 -8.78071 -8.61989 -7.38026 -6.08579 -4.06456 3.17413 3.25347 3.33563 3.35042 4.35273 4.39021 4.53000 4.64339 4.85288 4.99837 5.11013 5.21288 5.25309 5.29053 5.38808 5.45487 5.54862 5.58053 5.64641 5.72138 5.72919 5.78000 5.84708 5.88891 6.00172 6.07640 6.10901 6.21645 6.24398 6.30125 6.44848 6.58449 6.63298 6.65837 6.73688 6.85517 6.96352 6.99531 7.14150 7.58618 7.86163 8.25534 8.60895 8.99528 9.53590 11.04641 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.007150 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.113799 B = 3915.335766 C = 4918.777669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.162 3.838 10 N -0.653 5.653 11 C 0.096 3.904 12 H 0.100 0.900 13 C -0.218 4.218 14 H 0.124 0.876 15 C -0.141 4.141 16 C 0.049 3.951 17 O -0.359 6.359 18 C 0.032 3.968 19 H 0.078 0.922 20 C -0.033 4.033 21 C -0.093 4.093 22 C -0.137 4.137 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.095 4.095 26 H 0.263 0.737 27 H 0.025 0.975 28 H -0.020 1.020 29 H 0.340 0.660 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.112 0.888 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.499 -7.400 -0.824 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.283 5.283 11 C -0.016 4.016 12 H 0.118 0.882 13 C -0.238 4.238 14 H 0.141 0.859 15 C -0.179 4.179 16 C -0.028 4.028 17 O -0.277 6.277 18 C -0.027 4.027 19 H 0.095 0.905 20 C -0.035 4.035 21 C -0.130 4.130 22 C -0.174 4.174 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.132 4.132 26 H 0.073 0.927 27 H 0.043 0.957 28 H -0.002 1.002 29 H 0.160 0.840 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.363 -7.526 -0.150 16.216 hybrid contribution 0.731 1.469 -1.015 1.930 sum 15.094 -6.057 -1.166 16.306 Atomic orbital electron populations 1.69896 1.06151 1.26846 1.50952 1.24892 0.94703 0.98875 0.94771 0.86845 0.80325 0.84046 0.78359 1.20471 1.21236 1.19225 1.21046 0.88922 0.94751 1.50584 0.90251 1.20039 0.96574 0.85169 0.94710 1.60506 1.03174 1.16049 1.48603 1.22932 0.90366 0.95747 0.92533 0.88184 1.25478 1.00639 1.01973 0.95712 0.85887 1.22341 0.95516 0.99009 1.01038 1.24133 0.97126 0.88246 0.93252 1.88440 1.66077 1.36802 1.36421 1.23547 0.87459 0.97168 0.94489 0.90454 1.21415 0.91156 0.96442 0.94445 1.21478 0.96346 0.96064 0.99066 1.21938 0.96903 1.03836 0.94770 1.21354 0.99695 0.97145 0.96247 1.21518 0.96042 1.00328 0.97630 1.21326 0.97815 1.00822 0.93248 0.92671 0.95663 1.00238 0.83957 0.91063 0.90825 0.89690 0.92202 0.91124 0.92563 0.93291 0.86990 0.93685 0.92505 0.93264 0.89115 0.92792 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -14.09 9.87 -34.44 -0.34 -14.43 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.16 3.71 4.40 -4.98 -0.02 3.69 16 10 N -0.65 -12.16 3.49 -121.32 -0.42 -12.58 16 11 C 0.10 1.50 3.07 -79.78 -0.24 1.26 16 12 H 0.10 1.61 7.46 -51.93 -0.39 1.22 16 13 C -0.22 -3.10 3.87 -102.32 -0.40 -3.50 16 14 H 0.12 1.78 4.98 -51.93 -0.26 1.52 16 15 C -0.14 -1.79 6.86 -25.81 -0.18 -1.96 16 16 C 0.05 0.57 7.76 38.64 0.30 0.87 16 17 O -0.36 -5.21 11.48 -33.13 -0.38 -5.59 16 18 C 0.03 0.45 4.26 -38.22 -0.16 0.29 16 19 H 0.08 1.06 7.53 -51.93 -0.39 0.66 16 20 C -0.03 -0.47 1.03 -168.41 -0.17 -0.64 16 21 C -0.09 -1.27 4.82 -26.88 -0.13 -1.40 16 22 C -0.14 -1.95 5.62 -26.66 -0.15 -2.10 16 23 C -0.11 -1.47 5.86 -26.75 -0.16 -1.62 16 24 C -0.12 -1.67 5.77 -26.66 -0.15 -1.83 16 25 C -0.09 -1.27 5.24 -26.88 -0.14 -1.41 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 27 H 0.03 0.60 7.19 -51.93 -0.37 0.22 16 28 H -0.02 -0.46 7.57 -51.93 -0.39 -0.86 16 29 H 0.34 6.29 6.82 -39.29 -0.27 6.02 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.97 5.18 -51.93 -0.27 0.70 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 1.86 4.59 -51.92 -0.24 1.62 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.53 7.09 -51.93 -0.37 1.16 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -28.86 315.39 -9.18 -38.04 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.19 Total: 6.14 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -2.04 Total: -20.93 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.35 Total: -38.95 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.38 Total: -5.59 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.86 -9.18 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713486309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.893 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds