Wall clock time and date at job start Mon Mar 30 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48497 * 109.47137 * 270.00176 * 3 2 1 5 5 H 1.48505 * 109.46868 * 30.00157 * 3 2 1 6 6 H 1.48504 * 109.47152 * 149.99720 * 3 2 1 7 7 C 1.37878 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00241 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00293 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99558 * 180.02562 * 10 9 7 12 12 H 1.08994 * 113.54321 * 29.75925 * 11 10 9 13 13 C 1.50447 * 114.56792 * 255.49118 * 11 10 9 14 14 H 1.08996 * 114.31385 * 319.39851 * 13 11 10 15 15 C 1.51895 * 127.62106 * 113.83043 * 13 11 10 16 16 C 1.55778 * 102.18302 * 118.51394 * 15 13 11 17 17 O 1.46071 * 105.52248 * 353.62614 * 16 15 13 18 18 C 1.40082 * 103.56694 * 330.13251 * 17 16 15 19 19 H 1.09001 * 110.02358 * 293.59787 * 18 17 16 20 20 C 1.48617 * 134.87214 * 138.67340 * 18 17 16 21 21 C 1.52569 * 116.62179 * 335.26250 * 20 18 17 22 22 C 1.53139 * 109.30626 * 195.48107 * 21 20 18 23 23 C 1.52990 * 109.42137 * 302.40362 * 22 21 20 24 24 C 1.52980 * 109.64190 * 61.87329 * 23 22 21 25 25 C 1.52555 * 116.67891 * 113.58761 * 20 18 17 26 26 H 0.97004 * 119.99801 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46648 * 60.00194 * 9 7 2 28 28 H 1.08996 * 109.47032 * 300.00779 * 9 7 2 29 29 H 1.00896 * 111.00112 * 56.05039 * 10 9 7 30 30 H 1.08996 * 110.86491 * 0.34385 * 15 13 11 31 31 H 1.09003 * 111.03725 * 236.76125 * 15 13 11 32 32 H 1.09002 * 110.25215 * 112.66325 * 16 15 13 33 33 H 1.09002 * 110.25357 * 234.58658 * 16 15 13 34 34 H 1.09000 * 109.49801 * 315.43237 * 21 20 18 35 35 H 1.09002 * 109.50080 * 75.53011 * 21 20 18 36 36 H 1.09000 * 109.48560 * 182.41651 * 22 21 20 37 37 H 1.09007 * 109.48757 * 62.39022 * 22 21 20 38 38 H 1.09001 * 109.44004 * 301.82200 * 23 22 21 39 39 H 1.09001 * 109.40898 * 181.90857 * 23 22 21 40 40 H 1.08994 * 109.47945 * 178.15721 * 24 23 22 41 41 H 1.09000 * 109.48342 * 58.13548 * 24 23 22 42 42 H 1.08999 * 109.50083 * 284.51513 * 25 20 18 43 43 H 1.08999 * 109.49952 * 44.58423 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4697 -2.6182 0.0001 12 1 5.9280 -1.7626 0.4960 13 6 6.0859 -2.9776 -1.3245 14 1 5.5653 -3.7707 -1.8612 15 6 6.9373 -2.0952 -2.2209 16 6 8.2856 -2.8742 -2.2642 17 8 8.1330 -3.9728 -1.3137 18 6 7.2473 -3.4594 -0.3575 19 1 7.7188 -2.6408 0.1864 20 6 6.0821 -4.0003 0.3898 21 6 5.3358 -5.1637 -0.2563 22 6 3.9762 -5.3350 0.4272 23 6 4.1852 -5.5647 1.9252 24 6 4.8703 -4.3437 2.5420 25 6 6.2470 -4.1529 1.8987 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8745 -0.6807 -0.8904 29 1 3.6254 -3.0955 -0.7810 30 1 7.0733 -1.1085 -1.7784 31 1 6.5032 -2.0153 -3.2176 32 1 8.4640 -3.2643 -3.2662 33 1 9.1067 -2.2245 -1.9612 34 1 5.1869 -4.9567 -1.3160 35 1 5.9183 -6.0779 -0.1421 36 1 3.4584 -6.1922 -0.0031 37 1 3.3780 -4.4362 0.2773 38 1 4.8106 -6.4450 2.0735 39 1 3.2195 -5.7203 2.4061 40 1 4.9883 -4.4964 3.6147 41 1 4.2608 -3.4573 2.3659 42 1 6.8711 -5.0211 2.1106 43 1 6.7182 -3.2581 2.3055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713486309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:12 Heat of formation + Delta-G solvation = 23.837603 kcal Electronic energy + Delta-G solvation = -21871.843204 eV Core-core repulsion = 18919.317774 eV Total energy + Delta-G solvation = -2952.525431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.38190 -38.99039 -36.53969 -35.27498 -33.81044 -32.20633 -31.76701 -29.20060 -28.25104 -25.05319 -24.49288 -23.52472 -22.67469 -21.68002 -21.03017 -19.74817 -18.75661 -17.25121 -17.10884 -16.84542 -16.22973 -15.86814 -15.51502 -15.16523 -14.81137 -14.71361 -14.53100 -14.42494 -13.97902 -13.66876 -13.39262 -13.15436 -12.82965 -12.72756 -12.69201 -12.44592 -12.32920 -12.06588 -11.82002 -11.69057 -11.60979 -11.38139 -11.14464 -11.10465 -10.79046 -10.76216 -10.59406 -9.92043 -8.85156 -8.27244 -6.30238 1.34320 1.36488 1.46902 2.11268 2.34979 3.07534 3.23710 3.30181 3.51074 3.82911 3.98767 4.02736 4.09530 4.17565 4.27864 4.36117 4.43641 4.51970 4.53743 4.60179 4.64783 4.73966 4.79756 4.81589 4.86280 4.95227 4.97128 5.04665 5.09670 5.15067 5.17309 5.22702 5.32904 5.47454 5.52717 5.54282 5.56519 5.64550 5.92451 5.92688 6.04736 6.61162 6.70167 6.80918 7.34667 8.89361 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.007150 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.113799 B = 3915.335766 C = 4918.777669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.519 4.519 8 H 0.040 0.960 9 C 0.176 3.824 10 N -0.652 5.652 11 C 0.087 3.913 12 H 0.099 0.901 13 C -0.222 4.222 14 H 0.120 0.880 15 C -0.142 4.142 16 C 0.050 3.950 17 O -0.376 6.376 18 C 0.041 3.959 19 H 0.084 0.916 20 C -0.026 4.026 21 C -0.089 4.089 22 C -0.136 4.136 23 C -0.106 4.106 24 C -0.115 4.115 25 C -0.093 4.093 26 H 0.265 0.735 27 H 0.023 0.977 28 H -0.018 1.018 29 H 0.339 0.661 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.242 -7.250 -1.020 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.557 4.557 8 H 0.058 0.942 9 C 0.048 3.952 10 N -0.282 5.282 11 C -0.024 4.024 12 H 0.117 0.883 13 C -0.242 4.242 14 H 0.138 0.862 15 C -0.179 4.179 16 C -0.025 4.025 17 O -0.295 6.295 18 C -0.018 4.018 19 H 0.102 0.898 20 C -0.027 4.027 21 C -0.125 4.125 22 C -0.173 4.173 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.130 4.130 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.000 1.000 29 H 0.159 0.841 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.136 -7.396 -0.349 18.667 hybrid contribution -0.162 1.316 -0.968 1.642 sum 16.973 -6.079 -1.318 18.077 Atomic orbital electron populations 1.70053 1.08128 1.27980 1.52750 1.25817 0.95519 1.03061 0.94477 0.85727 0.79457 0.78860 0.78912 1.19483 1.21054 1.17328 1.21339 0.91440 0.93305 1.49664 0.94168 1.19742 0.93468 0.87641 0.94387 1.60451 1.05450 1.13459 1.48796 1.23012 0.88173 0.97003 0.94208 0.88334 1.25409 1.00657 1.02399 0.95756 0.86235 1.22377 0.95775 0.98887 1.00898 1.24279 0.96851 0.87786 0.93633 1.88423 1.65994 1.38132 1.36905 1.23446 0.87220 0.96945 0.94219 0.89830 1.21376 0.91047 0.95264 0.95023 1.21443 0.95863 0.96344 0.98892 1.21865 0.97087 1.02854 0.95529 1.21354 0.99756 0.97639 0.95620 1.21457 0.96117 0.99094 0.98631 1.21329 0.97375 1.01714 0.92624 0.92562 0.95910 1.00039 0.84096 0.90968 0.90328 0.87994 0.90489 0.91206 0.91664 0.92548 0.89630 0.91949 0.93114 0.92018 0.92217 0.91419 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 2 C 0.01 0.49 5.47 84.66 0.46 0.95 16 3 Si 0.95 43.62 27.47 68.60 1.88 45.50 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 7 C -0.52 -29.21 9.87 25.60 0.25 -28.96 16 8 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 9 C 0.18 8.02 4.40 85.56 0.38 8.39 16 10 N -0.65 -24.41 3.49 -537.74 -1.88 -26.29 16 11 C 0.09 2.63 3.07 37.10 0.11 2.74 16 12 H 0.10 3.02 7.46 -2.39 -0.02 3.00 16 13 C -0.22 -5.95 3.87 -18.37 -0.07 -6.02 16 14 H 0.12 3.31 4.98 -2.39 -0.01 3.30 16 15 C -0.14 -3.23 6.86 31.19 0.21 -3.02 16 16 C 0.05 1.01 7.76 72.94 0.57 1.57 16 17 O -0.38 -9.83 11.48 -141.47 -1.62 -11.45 16 18 C 0.04 1.04 4.26 23.15 0.10 1.14 16 19 H 0.08 2.05 7.53 -2.39 -0.02 2.03 16 20 C -0.03 -0.68 1.03 -61.18 -0.06 -0.75 16 21 C -0.09 -2.29 4.82 30.50 0.15 -2.15 16 22 C -0.14 -3.82 5.62 30.64 0.17 -3.64 16 23 C -0.11 -2.81 5.86 30.58 0.18 -2.63 16 24 C -0.12 -3.16 5.77 30.64 0.18 -2.99 16 25 C -0.09 -2.31 5.24 30.50 0.16 -2.15 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.02 1.06 7.19 -2.39 -0.02 1.04 16 28 H -0.02 -0.82 7.57 -2.39 -0.02 -0.83 16 29 H 0.34 12.81 6.82 -89.70 -0.61 12.20 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.83 5.18 -2.39 -0.01 1.82 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 2.91 4.59 -2.38 -0.01 2.90 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 2.02 7.09 -2.39 -0.02 2.01 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -62.48 315.39 1.79 -60.69 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.32 Total: 27.58 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 2.79 Total: -37.51 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.58 Total: -84.81 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.62 Total: -11.45 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Total: -62.48 1.79 -60.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713486309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.527 kcal (2) G-P(sol) polarization free energy of solvation -62.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds