Wall clock time and date at job start Mon Mar 30 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48502 * 109.47127 * 269.99927 * 3 2 1 5 5 H 1.48499 * 109.47269 * 30.00253 * 3 2 1 6 6 H 1.48505 * 109.47090 * 150.00015 * 3 2 1 7 7 C 1.37877 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99598 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47122 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99997 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.80310 * 29.28359 * 11 10 9 13 13 C 1.53756 * 113.54346 * 258.20059 * 11 10 9 14 14 H 1.09009 * 116.31384 * 150.49386 * 13 11 10 15 15 C 1.54455 * 112.92323 * 13.28636 * 13 11 10 16 16 C 1.54458 * 104.16270 * 266.61483 * 15 13 11 17 17 O 1.44386 * 104.76020 * 24.28456 * 16 15 13 18 18 C 1.44231 * 105.48326 * 319.47005 * 17 16 15 19 19 H 1.09006 * 115.50454 * 270.64039 * 18 17 16 20 20 C 1.53307 * 113.49123 * 133.39979 * 18 17 16 21 21 C 1.52795 * 113.43606 * 33.87412 * 20 18 17 22 22 C 1.53126 * 109.24135 * 187.12275 * 21 20 18 23 23 C 1.52987 * 109.43644 * 302.02608 * 22 21 20 24 24 C 1.52984 * 109.61354 * 61.77852 * 23 22 21 25 25 C 1.52760 * 113.45398 * 164.37801 * 20 18 17 26 26 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47342 * 60.00114 * 9 7 2 28 28 H 1.08997 * 109.47698 * 299.99827 * 9 7 2 29 29 H 1.00899 * 110.99831 * 303.95640 * 10 9 7 30 30 H 1.09002 * 110.49610 * 25.28222 * 15 13 11 31 31 H 1.08996 * 110.49493 * 147.94562 * 15 13 11 32 32 H 1.08998 * 110.38423 * 143.10897 * 16 15 13 33 33 H 1.09001 * 110.37991 * 265.35611 * 16 15 13 34 34 H 1.08995 * 109.50933 * 307.05160 * 21 20 18 35 35 H 1.08996 * 109.50814 * 67.19499 * 21 20 18 36 36 H 1.09007 * 109.47501 * 182.03914 * 22 21 20 37 37 H 1.08996 * 109.47945 * 62.02332 * 22 21 20 38 38 H 1.09002 * 109.44527 * 301.73644 * 23 22 21 39 39 H 1.09000 * 109.42279 * 181.80719 * 23 22 21 40 40 H 1.08996 * 109.47011 * 178.30505 * 24 23 22 41 41 H 1.09006 * 109.47477 * 58.30774 * 24 23 22 42 42 H 1.09003 * 109.49949 * 292.89954 * 25 20 18 43 43 H 1.08995 * 109.50303 * 52.97202 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 -0.0001 12 1 0.5338 -4.8604 -0.4919 13 6 1.4655 -5.5847 1.3795 14 1 0.6062 -6.2252 1.5786 15 6 1.8729 -4.6356 2.5280 16 6 3.3871 -4.8841 2.7045 17 8 3.8288 -5.3877 1.4254 18 6 2.7904 -6.2871 0.9862 19 1 2.9023 -7.3239 1.3035 20 6 2.3767 -6.0760 -0.4748 21 6 3.5320 -5.6458 -1.3775 22 6 2.9849 -5.2916 -2.7631 23 6 2.2479 -6.5000 -3.3436 24 6 1.0622 -6.8583 -2.4457 25 6 1.5732 -7.2393 -1.0534 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.8406 -3.5486 -0.7808 30 1 1.6864 -3.5982 2.2502 31 1 1.3355 -4.8895 3.4416 32 1 3.8995 -3.9522 2.9431 33 1 3.5618 -5.6234 3.4862 34 1 4.0251 -4.7743 -0.9471 35 1 4.2479 -6.4629 -1.4667 36 1 3.8103 -5.0189 -3.4209 37 1 2.2954 -4.4518 -2.6778 38 1 2.9300 -7.3484 -3.3998 39 1 1.8863 -6.2582 -4.3430 40 1 0.5212 -7.7004 -2.8772 41 1 0.3947 -6.0003 -2.3656 42 1 2.2107 -8.1202 -1.1283 43 1 0.7271 -7.4568 -0.4016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713486310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:17 Heat of formation + Delta-G solvation = -29.584699 kcal Electronic energy + Delta-G solvation = -22005.848601 eV Core-core repulsion = 19051.006606 eV Total energy + Delta-G solvation = -2954.841995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.15298 -37.35681 -34.82413 -33.26197 -31.73098 -30.98186 -30.26543 -27.42960 -26.44776 -23.50118 -22.82968 -22.66060 -21.26704 -20.77431 -19.46221 -17.71324 -16.45500 -16.11584 -15.75650 -15.16842 -14.52898 -14.49531 -14.05640 -14.01379 -13.70004 -13.07269 -12.85354 -12.54816 -12.42874 -12.05416 -11.92314 -11.77752 -11.42208 -11.08260 -11.04637 -10.92185 -10.76687 -10.69742 -10.52318 -10.40668 -10.13518 -9.92080 -9.80798 -9.76031 -9.25678 -9.13743 -8.86234 -8.44527 -7.14559 -6.00892 -4.02246 3.32831 3.39066 3.43834 4.11383 4.44254 4.61942 4.83875 4.93744 5.08680 5.14655 5.27629 5.35226 5.40605 5.46081 5.47986 5.59801 5.63244 5.71277 5.72790 5.78134 5.81995 5.87657 5.97641 6.05411 6.15512 6.18381 6.27438 6.30020 6.33665 6.35909 6.42917 6.48627 6.63848 6.83318 6.84600 6.99611 7.32700 7.46917 7.48680 7.84753 8.19465 8.49566 8.71367 9.08533 9.62846 11.10025 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.006805 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.436875 B = 4113.744963 C = 4839.550078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.659 5.659 11 C 0.092 3.908 12 H 0.045 0.955 13 C -0.138 4.138 14 H 0.094 0.906 15 C -0.137 4.137 16 C 0.064 3.936 17 O -0.341 6.341 18 C 0.063 3.937 19 H 0.074 0.926 20 C -0.077 4.077 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.091 4.091 26 H 0.260 0.740 27 H -0.018 1.018 28 H 0.027 0.973 29 H 0.336 0.664 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -14.919 -0.988 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.293 5.293 11 C -0.020 4.020 12 H 0.063 0.937 13 C -0.157 4.157 14 H 0.112 0.888 15 C -0.174 4.174 16 C -0.013 4.013 17 O -0.259 6.259 18 C 0.004 3.996 19 H 0.092 0.908 20 C -0.078 4.078 21 C -0.138 4.138 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.129 4.129 26 H 0.070 0.930 27 H 0.000 1.000 28 H 0.045 0.955 29 H 0.157 0.843 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.584 -14.694 -0.421 15.131 hybrid contribution -0.281 0.868 -0.685 1.141 sum 3.304 -13.826 -1.106 14.259 Atomic orbital electron populations 1.69966 1.06040 1.26647 1.51126 1.24971 0.94822 0.99247 0.95473 0.86531 0.79844 0.83230 0.77996 1.20811 1.21335 1.19788 1.21184 0.93493 0.90225 1.49978 0.92017 1.19590 0.90630 0.87461 0.95433 1.60533 1.20033 0.99603 1.49108 1.22315 0.95413 0.90423 0.93836 0.93730 1.24085 0.97557 0.97589 0.96517 0.88811 1.22746 0.95144 1.03324 0.96228 1.23216 0.94791 0.97878 0.85385 1.88978 1.41005 1.60808 1.35082 1.23829 0.87684 0.92709 0.95336 0.90839 1.21825 0.96353 0.96290 0.93301 1.21322 0.96581 1.02009 0.93915 1.21597 0.99865 0.97988 0.96631 1.21489 0.97221 0.98298 0.98303 1.21506 0.97837 1.01140 0.95008 1.21216 0.98883 0.96518 0.96245 0.93023 1.00000 0.95542 0.84291 0.87684 0.92973 0.89469 0.94345 0.89527 0.92605 0.92277 0.91681 0.92429 0.92532 0.92342 0.91727 0.91912 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.31 9.32 -34.44 -0.32 -14.63 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 5.03 4.78 -4.97 -0.02 5.01 16 10 N -0.66 -13.85 4.12 -107.39 -0.44 -14.29 16 11 C 0.09 1.62 3.14 -67.15 -0.21 1.41 16 12 H 0.04 0.85 7.13 -51.93 -0.37 0.48 16 13 C -0.14 -2.20 4.65 -88.39 -0.41 -2.61 16 14 H 0.09 1.33 8.01 -51.92 -0.42 0.91 16 15 C -0.14 -2.31 6.27 -25.20 -0.16 -2.47 16 16 C 0.06 1.02 7.62 37.92 0.29 1.31 16 17 O -0.34 -5.92 9.53 -35.23 -0.34 -6.26 16 18 C 0.06 0.95 4.73 -25.50 -0.12 0.83 16 19 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 20 C -0.08 -1.13 0.69 -154.41 -0.11 -1.23 16 21 C -0.10 -1.49 4.25 -26.77 -0.11 -1.60 16 22 C -0.12 -1.71 5.63 -26.67 -0.15 -1.86 16 23 C -0.12 -1.38 5.87 -26.75 -0.16 -1.54 16 24 C -0.12 -1.41 5.84 -26.67 -0.16 -1.57 16 25 C -0.09 -1.11 5.05 -26.79 -0.14 -1.24 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H -0.02 -0.49 8.12 -51.93 -0.42 -0.92 16 28 H 0.03 0.74 7.15 -51.93 -0.37 0.37 16 29 H 0.34 7.04 5.30 -39.29 -0.21 6.83 16 30 H 0.10 2.18 5.55 -51.93 -0.29 1.89 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.48 5.71 -51.93 -0.30 1.19 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.06 1.05 7.38 -51.93 -0.38 0.67 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.88 7.39 -51.93 -0.38 0.50 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.73 7.64 -51.93 -0.40 0.33 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -29.13 318.01 -9.45 -38.58 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.31 Total: 5.13 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.87 Total: -18.69 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.29 Total: -40.31 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.34 Total: -6.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.13 -9.45 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713486310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.999 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds