Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48502 * 109.47127 * 269.99927 * 3 2 1 5 5 H 1.48499 * 109.47269 * 30.00253 * 3 2 1 6 6 H 1.48505 * 109.47090 * 150.00015 * 3 2 1 7 7 C 1.37877 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99598 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47122 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99997 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.80310 * 29.28359 * 11 10 9 13 13 C 1.53756 * 113.54346 * 258.20059 * 11 10 9 14 14 H 1.09009 * 116.31384 * 150.49386 * 13 11 10 15 15 C 1.54455 * 112.92323 * 13.28636 * 13 11 10 16 16 C 1.54458 * 104.16270 * 266.61483 * 15 13 11 17 17 O 1.44386 * 104.76020 * 24.28456 * 16 15 13 18 18 C 1.44231 * 105.48326 * 319.47005 * 17 16 15 19 19 H 1.09006 * 115.50454 * 270.64039 * 18 17 16 20 20 C 1.53307 * 113.49123 * 133.39979 * 18 17 16 21 21 C 1.52795 * 113.43606 * 33.87412 * 20 18 17 22 22 C 1.53126 * 109.24135 * 187.12275 * 21 20 18 23 23 C 1.52987 * 109.43644 * 302.02608 * 22 21 20 24 24 C 1.52984 * 109.61354 * 61.77852 * 23 22 21 25 25 C 1.52760 * 113.45398 * 164.37801 * 20 18 17 26 26 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47342 * 60.00114 * 9 7 2 28 28 H 1.08997 * 109.47698 * 299.99827 * 9 7 2 29 29 H 1.00899 * 110.99831 * 303.95640 * 10 9 7 30 30 H 1.09002 * 110.49610 * 25.28222 * 15 13 11 31 31 H 1.08996 * 110.49493 * 147.94562 * 15 13 11 32 32 H 1.08998 * 110.38423 * 143.10897 * 16 15 13 33 33 H 1.09001 * 110.37991 * 265.35611 * 16 15 13 34 34 H 1.08995 * 109.50933 * 307.05160 * 21 20 18 35 35 H 1.08996 * 109.50814 * 67.19499 * 21 20 18 36 36 H 1.09007 * 109.47501 * 182.03914 * 22 21 20 37 37 H 1.08996 * 109.47945 * 62.02332 * 22 21 20 38 38 H 1.09002 * 109.44527 * 301.73644 * 23 22 21 39 39 H 1.09000 * 109.42279 * 181.80719 * 23 22 21 40 40 H 1.08996 * 109.47011 * 178.30505 * 24 23 22 41 41 H 1.09006 * 109.47477 * 58.30774 * 24 23 22 42 42 H 1.09003 * 109.49949 * 292.89954 * 25 20 18 43 43 H 1.08995 * 109.50303 * 52.97202 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 -0.0001 12 1 0.5338 -4.8604 -0.4919 13 6 1.4655 -5.5847 1.3795 14 1 0.6062 -6.2252 1.5786 15 6 1.8729 -4.6356 2.5280 16 6 3.3871 -4.8841 2.7045 17 8 3.8288 -5.3877 1.4254 18 6 2.7904 -6.2871 0.9862 19 1 2.9023 -7.3239 1.3035 20 6 2.3767 -6.0760 -0.4748 21 6 3.5320 -5.6458 -1.3775 22 6 2.9849 -5.2916 -2.7631 23 6 2.2479 -6.5000 -3.3436 24 6 1.0622 -6.8583 -2.4457 25 6 1.5732 -7.2393 -1.0534 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.8406 -3.5486 -0.7808 30 1 1.6864 -3.5982 2.2502 31 1 1.3355 -4.8895 3.4416 32 1 3.8995 -3.9522 2.9431 33 1 3.5618 -5.6234 3.4862 34 1 4.0251 -4.7743 -0.9471 35 1 4.2479 -6.4629 -1.4667 36 1 3.8103 -5.0189 -3.4209 37 1 2.2954 -4.4518 -2.6778 38 1 2.9300 -7.3484 -3.3998 39 1 1.8863 -6.2582 -4.3430 40 1 0.5212 -7.7004 -2.8772 41 1 0.3947 -6.0003 -2.3656 42 1 2.2107 -8.1202 -1.1283 43 1 0.7271 -7.4568 -0.4016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713486310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = -46.664742 kcal Electronic energy + Delta-G solvation = -22006.589248 eV Core-core repulsion = 19051.006606 eV Total energy + Delta-G solvation = -2955.582642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43059 -38.51766 -36.48444 -34.97628 -33.52960 -32.21455 -31.49430 -28.75322 -28.30062 -25.10852 -24.03495 -23.96772 -23.00274 -21.93232 -20.68730 -19.24071 -18.17121 -17.61965 -16.98447 -16.87229 -16.33697 -15.74457 -15.38418 -15.18002 -14.89021 -14.61717 -14.40522 -14.19337 -13.66073 -13.57603 -13.32260 -13.08488 -12.97542 -12.75881 -12.65438 -12.27860 -12.17771 -12.11687 -11.93139 -11.83544 -11.58271 -11.48641 -11.25338 -10.96666 -10.88338 -10.66323 -10.45640 -10.18349 -8.94618 -8.22825 -6.33329 1.38127 1.39513 1.51467 2.38276 2.88934 3.10151 3.35178 3.54217 3.75918 3.91931 3.98191 4.06099 4.16610 4.26583 4.36522 4.44786 4.45850 4.47142 4.54809 4.65264 4.70587 4.75646 4.80597 4.89185 4.94188 5.02757 5.05848 5.14025 5.15623 5.19496 5.23260 5.29275 5.30302 5.42012 5.51552 5.58139 5.61685 5.62921 5.66145 6.05780 6.21538 6.54289 6.81012 6.93931 7.37771 8.88513 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.006805 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.436875 B = 4113.744963 C = 4839.550078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.219 3.781 10 N -0.650 5.650 11 C 0.073 3.927 12 H 0.023 0.977 13 C -0.138 4.138 14 H 0.118 0.882 15 C -0.139 4.139 16 C 0.066 3.934 17 O -0.364 6.364 18 C 0.069 3.931 19 H 0.108 0.892 20 C -0.065 4.065 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.087 4.087 26 H 0.264 0.736 27 H -0.053 1.053 28 H -0.001 1.001 29 H 0.334 0.666 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.089 0.911 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 -17.049 -0.945 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.091 3.909 10 N -0.283 5.283 11 C -0.038 4.038 12 H 0.041 0.959 13 C -0.157 4.157 14 H 0.136 0.864 15 C -0.177 4.177 16 C -0.010 4.010 17 O -0.282 6.282 18 C 0.011 3.989 19 H 0.125 0.875 20 C -0.066 4.066 21 C -0.135 4.135 22 C -0.159 4.159 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.124 4.124 26 H 0.073 0.927 27 H -0.035 1.035 28 H 0.017 0.983 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.762 -16.844 -0.377 17.508 hybrid contribution -0.685 1.524 -0.703 1.812 sum 4.077 -15.321 -1.080 15.891 Atomic orbital electron populations 1.70096 1.07713 1.27822 1.51719 1.25899 0.95725 1.03159 0.94711 0.85394 0.78551 0.78305 0.78422 1.19816 1.20595 1.19034 1.21491 0.93507 0.91523 1.50231 0.92283 1.19142 0.90449 0.88995 0.92340 1.60449 1.18953 1.00002 1.48854 1.22482 0.95028 0.90093 0.96229 0.95899 1.24178 0.99345 0.97524 0.94626 0.86413 1.22676 0.96614 1.00798 0.97580 1.23247 0.93552 0.98371 0.85878 1.88954 1.41891 1.61610 1.35789 1.23978 0.86176 0.93616 0.95086 0.87497 1.21862 0.95637 0.95440 0.93637 1.21257 0.96849 1.01414 0.94018 1.21566 0.99604 0.97993 0.96776 1.21477 0.97305 0.97764 0.98313 1.21518 0.97626 1.00970 0.95407 1.21254 0.99217 0.95924 0.96034 0.92724 1.03528 0.98301 0.84518 0.92402 0.90816 0.90856 0.91042 0.92506 0.90600 0.91475 0.95220 0.90219 0.91978 0.89845 0.94542 0.89209 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 0.18 5.46 84.65 0.46 0.65 16 3 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -31.06 9.32 25.60 0.24 -30.82 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.22 12.08 4.78 85.55 0.41 12.49 16 10 N -0.65 -28.95 4.12 -493.69 -2.04 -30.99 16 11 C 0.07 2.65 3.14 45.28 0.14 2.80 16 12 H 0.02 0.94 7.13 -2.39 -0.02 0.92 16 13 C -0.14 -4.26 4.65 -9.35 -0.04 -4.31 16 14 H 0.12 3.08 8.01 -2.38 -0.02 3.06 16 15 C -0.14 -4.70 6.27 31.58 0.20 -4.50 16 16 C 0.07 2.05 7.62 72.48 0.55 2.60 16 17 O -0.36 -12.22 9.53 -148.98 -1.42 -13.63 16 18 C 0.07 1.93 4.73 31.39 0.15 2.07 16 19 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 20 C -0.07 -1.81 0.69 -52.12 -0.04 -1.85 16 21 C -0.10 -2.80 4.25 30.57 0.13 -2.67 16 22 C -0.12 -3.36 5.63 30.63 0.17 -3.19 16 23 C -0.11 -2.42 5.87 30.58 0.18 -2.24 16 24 C -0.12 -2.60 5.84 30.63 0.18 -2.42 16 25 C -0.09 -1.84 5.05 30.56 0.15 -1.69 16 26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 27 H -0.05 -3.21 8.12 -2.39 -0.02 -3.23 16 28 H 0.00 -0.06 7.15 -2.39 -0.02 -0.08 16 29 H 0.33 14.91 5.30 -89.69 -0.48 14.43 16 30 H 0.06 2.53 5.55 -2.39 -0.01 2.52 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.98 5.71 -2.39 -0.01 1.96 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.03 1.01 7.38 -2.39 -0.02 0.99 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.00 7.39 -2.38 -0.02 0.98 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.42 7.64 -2.39 -0.02 1.41 16 Total: -1.00 -66.18 318.01 2.25 -63.93 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.50 Total: 23.50 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 2.89 Total: -33.08 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -1.75 Total: -88.22 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.42 Total: -13.63 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.18 2.25 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713486310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.265 kcal (2) G-P(sol) polarization free energy of solvation -66.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds