Wall clock time and date at job start Mon Mar 30 2020 06:57:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 119.99715 * 2 1
4 4 H 1.48502 * 109.47127 * 269.99927 * 3 2 1
5 5 H 1.48499 * 109.47269 * 30.00253 * 3 2 1
6 6 H 1.48505 * 109.47090 * 150.00015 * 3 2 1
7 7 C 1.37877 * 120.00291 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99997 * 179.97438 * 7 2 1
9 9 C 1.50696 * 119.99598 * 0.02562 * 7 2 1
10 10 N 1.46906 * 109.47122 * 179.97438 * 9 7 2
11 11 C 1.46895 * 110.99997 * 180.02562 * 10 9 7
12 12 H 1.08998 * 112.80310 * 29.28359 * 11 10 9
13 13 C 1.53756 * 113.54346 * 258.20059 * 11 10 9
14 14 H 1.09009 * 116.31384 * 150.49386 * 13 11 10
15 15 C 1.54455 * 112.92323 * 13.28636 * 13 11 10
16 16 C 1.54458 * 104.16270 * 266.61483 * 15 13 11
17 17 O 1.44386 * 104.76020 * 24.28456 * 16 15 13
18 18 C 1.44231 * 105.48326 * 319.47005 * 17 16 15
19 19 H 1.09006 * 115.50454 * 270.64039 * 18 17 16
20 20 C 1.53307 * 113.49123 * 133.39979 * 18 17 16
21 21 C 1.52795 * 113.43606 * 33.87412 * 20 18 17
22 22 C 1.53126 * 109.24135 * 187.12275 * 21 20 18
23 23 C 1.52987 * 109.43644 * 302.02608 * 22 21 20
24 24 C 1.52984 * 109.61354 * 61.77852 * 23 22 21
25 25 C 1.52760 * 113.45398 * 164.37801 * 20 18 17
26 26 H 0.97001 * 120.00110 * 0.02562 * 1 2 3
27 27 H 1.09001 * 109.47342 * 60.00114 * 9 7 2
28 28 H 1.08997 * 109.47698 * 299.99827 * 9 7 2
29 29 H 1.00899 * 110.99831 * 303.95640 * 10 9 7
30 30 H 1.09002 * 110.49610 * 25.28222 * 15 13 11
31 31 H 1.08996 * 110.49493 * 147.94562 * 15 13 11
32 32 H 1.08998 * 110.38423 * 143.10897 * 16 15 13
33 33 H 1.09001 * 110.37991 * 265.35611 * 16 15 13
34 34 H 1.08995 * 109.50933 * 307.05160 * 21 20 18
35 35 H 1.08996 * 109.50814 * 67.19499 * 21 20 18
36 36 H 1.09007 * 109.47501 * 182.03914 * 22 21 20
37 37 H 1.08996 * 109.47945 * 62.02332 * 22 21 20
38 38 H 1.09002 * 109.44527 * 301.73644 * 23 22 21
39 39 H 1.09000 * 109.42279 * 181.80719 * 23 22 21
40 40 H 1.08996 * 109.47011 * 178.30505 * 24 23 22
41 41 H 1.09006 * 109.47477 * 58.30774 * 24 23 22
42 42 H 1.09003 * 109.49949 * 292.89954 * 25 20 18
43 43 H 1.08995 * 109.50303 * 52.97202 * 25 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2511 -2.4991 0.0005
10 7 2.2057 -3.6157 0.0005
11 6 1.5054 -4.9070 -0.0001
12 1 0.5338 -4.8604 -0.4919
13 6 1.4655 -5.5847 1.3795
14 1 0.6062 -6.2252 1.5786
15 6 1.8729 -4.6356 2.5280
16 6 3.3871 -4.8841 2.7045
17 8 3.8288 -5.3877 1.4254
18 6 2.7904 -6.2871 0.9862
19 1 2.9023 -7.3239 1.3035
20 6 2.3767 -6.0760 -0.4748
21 6 3.5320 -5.6458 -1.3775
22 6 2.9849 -5.2916 -2.7631
23 6 2.2479 -6.5000 -3.3436
24 6 1.0622 -6.8583 -2.4457
25 6 1.5732 -7.2393 -1.0534
26 1 -0.4850 0.8400 -0.0004
27 1 0.6248 -2.5570 -0.8897
28 1 0.6241 -2.5567 0.8902
29 1 2.8406 -3.5486 -0.7808
30 1 1.6864 -3.5982 2.2502
31 1 1.3355 -4.8895 3.4416
32 1 3.8995 -3.9522 2.9431
33 1 3.5618 -5.6234 3.4862
34 1 4.0251 -4.7743 -0.9471
35 1 4.2479 -6.4629 -1.4667
36 1 3.8103 -5.0189 -3.4209
37 1 2.2954 -4.4518 -2.6778
38 1 2.9300 -7.3484 -3.3998
39 1 1.8863 -6.2582 -4.3430
40 1 0.5212 -7.7004 -2.8772
41 1 0.3947 -6.0003 -2.3656
42 1 2.2107 -8.1202 -1.1283
43 1 0.7271 -7.4568 -0.4016
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000713486310.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:57:16
Heat of formation + Delta-G solvation = -46.664742 kcal
Electronic energy + Delta-G solvation = -22006.589248 eV
Core-core repulsion = 19051.006606 eV
Total energy + Delta-G solvation = -2955.582642 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.43059 -38.51766 -36.48444 -34.97628 -33.52960 -32.21455 -31.49430 -28.75322
-28.30062 -25.10852 -24.03495 -23.96772 -23.00274 -21.93232 -20.68730 -19.24071
-18.17121 -17.61965 -16.98447 -16.87229 -16.33697 -15.74457 -15.38418 -15.18002
-14.89021 -14.61717 -14.40522 -14.19337 -13.66073 -13.57603 -13.32260 -13.08488
-12.97542 -12.75881 -12.65438 -12.27860 -12.17771 -12.11687 -11.93139 -11.83544
-11.58271 -11.48641 -11.25338 -10.96666 -10.88338 -10.66323 -10.45640 -10.18349
-8.94618 -8.22825 -6.33329 1.38127 1.39513 1.51467 2.38276 2.88934
3.10151 3.35178 3.54217 3.75918 3.91931 3.98191 4.06099 4.16610
4.26583 4.36522 4.44786 4.45850 4.47142 4.54809 4.65264 4.70587
4.75646 4.80597 4.89185 4.94188 5.02757 5.05848 5.14025 5.15623
5.19496 5.23260 5.29275 5.30302 5.42012 5.51552 5.58139 5.61685
5.62921 5.66145 6.05780 6.21538 6.54289 6.81012 6.93931 7.37771
8.88513
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.018947 B = 0.006805 C = 0.005784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1477.436875 B = 4113.744963 C = 4839.550078
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.003 3.997
3 Si 0.969 3.031
4 H -0.273 1.273
5 H -0.281 1.281
6 H -0.266 1.266
7 C -0.529 4.529
8 H 0.059 0.941
9 C 0.219 3.781
10 N -0.650 5.650
11 C 0.073 3.927
12 H 0.023 0.977
13 C -0.138 4.138
14 H 0.118 0.882
15 C -0.139 4.139
16 C 0.066 3.934
17 O -0.364 6.364
18 C 0.069 3.931
19 H 0.108 0.892
20 C -0.065 4.065
21 C -0.098 4.098
22 C -0.122 4.122
23 C -0.111 4.111
24 C -0.118 4.118
25 C -0.087 4.087
26 H 0.264 0.736
27 H -0.053 1.053
28 H -0.001 1.001
29 H 0.334 0.666
30 H 0.057 0.943
31 H 0.073 0.927
32 H 0.073 0.927
33 H 0.072 0.928
34 H 0.056 0.944
35 H 0.075 0.925
36 H 0.067 0.933
37 H 0.029 0.971
38 H 0.079 0.921
39 H 0.061 0.939
40 H 0.083 0.917
41 H 0.036 0.964
42 H 0.089 0.911
43 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.610 -17.049 -0.945 17.686
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.195 4.195
3 Si 0.793 3.207
4 H -0.198 1.198
5 H -0.206 1.206
6 H -0.190 1.190
7 C -0.568 4.568
8 H 0.077 0.923
9 C 0.091 3.909
10 N -0.283 5.283
11 C -0.038 4.038
12 H 0.041 0.959
13 C -0.157 4.157
14 H 0.136 0.864
15 C -0.177 4.177
16 C -0.010 4.010
17 O -0.282 6.282
18 C 0.011 3.989
19 H 0.125 0.875
20 C -0.066 4.066
21 C -0.135 4.135
22 C -0.159 4.159
23 C -0.149 4.149
24 C -0.155 4.155
25 C -0.124 4.124
26 H 0.073 0.927
27 H -0.035 1.035
28 H 0.017 0.983
29 H 0.155 0.845
30 H 0.076 0.924
31 H 0.092 0.908
32 H 0.091 0.909
33 H 0.090 0.910
34 H 0.075 0.925
35 H 0.094 0.906
36 H 0.085 0.915
37 H 0.048 0.952
38 H 0.098 0.902
39 H 0.080 0.920
40 H 0.102 0.898
41 H 0.055 0.945
42 H 0.108 0.892
43 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 4.762 -16.844 -0.377 17.508
hybrid contribution -0.685 1.524 -0.703 1.812
sum 4.077 -15.321 -1.080 15.891
Atomic orbital electron populations
1.70096 1.07713 1.27822 1.51719 1.25899 0.95725 1.03159 0.94711
0.85394 0.78551 0.78305 0.78422 1.19816 1.20595 1.19034 1.21491
0.93507 0.91523 1.50231 0.92283 1.19142 0.90449 0.88995 0.92340
1.60449 1.18953 1.00002 1.48854 1.22482 0.95028 0.90093 0.96229
0.95899 1.24178 0.99345 0.97524 0.94626 0.86413 1.22676 0.96614
1.00798 0.97580 1.23247 0.93552 0.98371 0.85878 1.88954 1.41891
1.61610 1.35789 1.23978 0.86176 0.93616 0.95086 0.87497 1.21862
0.95637 0.95440 0.93637 1.21257 0.96849 1.01414 0.94018 1.21566
0.99604 0.97993 0.96776 1.21477 0.97305 0.97764 0.98313 1.21518
0.97626 1.00970 0.95407 1.21254 0.99217 0.95924 0.96034 0.92724
1.03528 0.98301 0.84518 0.92402 0.90816 0.90856 0.91042 0.92506
0.90600 0.91475 0.95220 0.90219 0.91978 0.89845 0.94542 0.89209
0.91050
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16
2 C 0.00 0.18 5.46 84.65 0.46 0.65 16
3 Si 0.97 45.47 29.54 68.60 2.03 47.50 16
4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16
5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16
6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
7 C -0.53 -31.06 9.32 25.60 0.24 -30.82 16
8 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16
9 C 0.22 12.08 4.78 85.55 0.41 12.49 16
10 N -0.65 -28.95 4.12 -493.69 -2.04 -30.99 16
11 C 0.07 2.65 3.14 45.28 0.14 2.80 16
12 H 0.02 0.94 7.13 -2.39 -0.02 0.92 16
13 C -0.14 -4.26 4.65 -9.35 -0.04 -4.31 16
14 H 0.12 3.08 8.01 -2.38 -0.02 3.06 16
15 C -0.14 -4.70 6.27 31.58 0.20 -4.50 16
16 C 0.07 2.05 7.62 72.48 0.55 2.60 16
17 O -0.36 -12.22 9.53 -148.98 -1.42 -13.63 16
18 C 0.07 1.93 4.73 31.39 0.15 2.07 16
19 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16
20 C -0.07 -1.81 0.69 -52.12 -0.04 -1.85 16
21 C -0.10 -2.80 4.25 30.57 0.13 -2.67 16
22 C -0.12 -3.36 5.63 30.63 0.17 -3.19 16
23 C -0.11 -2.42 5.87 30.58 0.18 -2.24 16
24 C -0.12 -2.60 5.84 30.63 0.18 -2.42 16
25 C -0.09 -1.84 5.05 30.56 0.15 -1.69 16
26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16
27 H -0.05 -3.21 8.12 -2.39 -0.02 -3.23 16
28 H 0.00 -0.06 7.15 -2.39 -0.02 -0.08 16
29 H 0.33 14.91 5.30 -89.69 -0.48 14.43 16
30 H 0.06 2.53 5.55 -2.39 -0.01 2.52 16
31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16
32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16
34 H 0.06 1.98 5.71 -2.39 -0.01 1.96 16
35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16
36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16
37 H 0.03 1.01 7.38 -2.39 -0.02 0.99 16
38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
40 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16
41 H 0.04 1.00 7.39 -2.38 -0.02 0.98 16
42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
43 H 0.07 1.42 7.64 -2.39 -0.02 1.41 16
Total: -1.00 -66.18 318.01 2.25 -63.93
By element:
Atomic # 1 Polarization: 23.00 SS G_CDS: 0.50 Total: 23.50 kcal
Atomic # 6 Polarization: -35.96 SS G_CDS: 2.89 Total: -33.08 kcal
Atomic # 7 Polarization: -86.47 SS G_CDS: -1.75 Total: -88.22 kcal
Atomic # 8 Polarization: -12.22 SS G_CDS: -1.42 Total: -13.63 kcal
Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal
Total: -66.18 2.25 -63.93 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713486310.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.265 kcal
(2) G-P(sol) polarization free energy of solvation -66.176 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds