Wall clock time and date at job start Mon Mar 30 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47052 * 240.00049 * 3 2 1 5 5 H 1.48493 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46878 * 120.00402 * 3 2 1 7 7 C 1.37879 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00269 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47444 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00243 * 179.97438 * 10 9 7 12 12 H 1.09002 * 113.53709 * 20.76832 * 11 10 9 13 13 C 1.50483 * 114.57101 * 246.45980 * 11 10 9 14 14 H 1.08994 * 114.34182 * 175.03861 * 13 11 10 15 15 C 1.52157 * 127.38403 * 19.94491 * 13 11 10 16 16 C 1.55766 * 102.07924 * 241.54467 * 15 13 11 17 17 O 1.46066 * 105.53206 * 6.33316 * 16 15 13 18 18 C 1.39915 * 103.64465 * 29.94164 * 17 16 15 19 19 H 1.09000 * 110.35557 * 64.95267 * 18 17 16 20 20 C 1.48527 * 135.13026 * 221.10920 * 18 17 16 21 21 C 1.52574 * 116.79789 * 24.89233 * 20 18 17 22 22 C 1.53147 * 109.34697 * 275.50376 * 21 20 18 23 23 C 1.52982 * 109.42321 * 302.42579 * 22 21 20 24 24 C 1.52996 * 109.60538 * 61.93451 * 23 22 21 25 25 C 1.52574 * 116.79618 * 246.15715 * 20 18 17 26 26 H 0.97001 * 119.99826 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.46974 * 60.00157 * 9 7 2 28 28 H 1.09002 * 109.47190 * 300.00797 * 9 7 2 29 29 H 1.00904 * 111.00149 * 303.96056 * 10 9 7 30 30 H 1.09007 * 110.89710 * 123.41587 * 15 13 11 31 31 H 1.08998 * 110.92156 * 359.68809 * 15 13 11 32 32 H 1.09002 * 110.25101 * 247.29038 * 16 15 13 33 33 H 1.09002 * 110.24668 * 125.37239 * 16 15 13 34 34 H 1.08991 * 109.49264 * 35.46751 * 21 20 18 35 35 H 1.08999 * 109.48931 * 155.54396 * 21 20 18 36 36 H 1.08998 * 109.47648 * 182.44432 * 22 21 20 37 37 H 1.09006 * 109.48067 * 62.41527 * 22 21 20 38 38 H 1.08995 * 109.45177 * 301.89523 * 23 22 21 39 39 H 1.08998 * 109.42656 * 181.96027 * 23 22 21 40 40 H 1.09001 * 109.47534 * 178.09612 * 24 23 22 41 41 H 1.08997 * 109.47778 * 58.06725 * 24 23 22 42 42 H 1.09004 * 109.48665 * 204.46787 * 25 20 18 43 43 H 1.08996 * 109.49154 * 324.51210 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5053 -4.9070 -0.0012 12 1 0.4760 -4.8442 -0.3544 13 6 1.6889 -5.7178 1.2531 14 1 1.1008 -6.6349 1.2854 15 6 2.1286 -5.2169 2.6210 16 6 3.4528 -6.0053 2.8467 17 8 3.7063 -6.7111 1.5933 18 6 3.1361 -5.8783 0.6243 19 1 3.6670 -4.9272 0.5819 20 6 2.3269 -6.0915 -0.6027 21 6 1.5092 -7.3777 -0.6725 22 6 2.3960 -8.5154 -1.1869 23 6 2.9658 -8.1374 -2.5554 24 6 3.8378 -6.8874 -2.4209 25 6 2.9792 -5.7181 -1.9304 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8400 -3.5483 -0.7836 30 1 1.3914 -5.4699 3.3831 31 1 2.3148 -4.1431 2.6008 32 1 3.3334 -6.7175 3.6632 33 1 4.2695 -5.3168 3.0638 34 1 1.1378 -7.6270 0.3214 35 1 0.6677 -7.2373 -1.3510 36 1 1.8030 -9.4253 -1.2788 37 1 3.2141 -8.6838 -0.4864 38 1 2.1472 -7.9362 -3.2464 39 1 3.5689 -8.9612 -2.9371 40 1 4.2697 -6.6397 -3.3906 41 1 4.6370 -7.0772 -1.7046 42 1 2.2058 -5.5006 -2.6671 43 1 3.6075 -4.8382 -1.7922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713486311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:21 Heat of formation + Delta-G solvation = 35.731811 kcal Electronic energy + Delta-G solvation = -21633.473542 eV Core-core repulsion = 18681.463883 eV Total energy + Delta-G solvation = -2952.009659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.07299 -37.58661 -35.66557 -33.50373 -31.75074 -30.86945 -30.58564 -27.47478 -26.28600 -23.83845 -23.62917 -22.21597 -21.50341 -20.73191 -19.22455 -18.30702 -16.52580 -16.19771 -15.69968 -15.08345 -14.95080 -14.56667 -14.30851 -14.05402 -13.60613 -13.33468 -13.07628 -12.85513 -12.34399 -12.24903 -12.16835 -11.79122 -11.46485 -11.20576 -11.05347 -10.92775 -10.84171 -10.76765 -10.71625 -10.43223 -10.31399 -10.12873 -9.85108 -9.55319 -9.40443 -9.20715 -8.53802 -8.42077 -7.38010 -6.06726 -4.09229 3.31090 3.35380 3.38066 3.51801 4.31393 4.43317 4.70052 4.81054 4.90278 5.12522 5.16206 5.29596 5.30066 5.34243 5.38445 5.43890 5.47656 5.59739 5.62524 5.70172 5.80708 5.84704 5.93707 6.02761 6.07335 6.08918 6.14409 6.23691 6.26553 6.28452 6.33969 6.40862 6.50469 6.61067 6.68890 6.79190 7.22624 7.35335 7.37713 7.73254 8.08193 8.29139 8.52365 8.99358 9.55887 11.04201 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.005555 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.198622 B = 5039.481631 C = 5616.008622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.196 3.804 10 N -0.665 5.665 11 C 0.087 3.913 12 H 0.061 0.939 13 C -0.190 4.190 14 H 0.110 0.890 15 C -0.132 4.132 16 C 0.053 3.947 17 O -0.369 6.369 18 C 0.044 3.956 19 H 0.110 0.890 20 C -0.049 4.049 21 C -0.101 4.101 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.110 4.110 26 H 0.262 0.738 27 H -0.012 1.012 28 H 0.029 0.971 29 H 0.333 0.667 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -15.246 -1.156 15.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.070 3.930 10 N -0.298 5.298 11 C -0.024 4.024 12 H 0.079 0.921 13 C -0.209 4.209 14 H 0.128 0.872 15 C -0.170 4.170 16 C -0.023 4.023 17 O -0.288 6.288 18 C -0.014 4.014 19 H 0.127 0.873 20 C -0.050 4.050 21 C -0.138 4.138 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.006 0.994 28 H 0.047 0.953 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.524 -15.272 -0.495 15.936 hybrid contribution -0.102 1.146 -0.722 1.358 sum 4.422 -14.127 -1.217 14.853 Atomic orbital electron populations 1.69951 1.06080 1.26942 1.50591 1.24970 0.94852 0.99323 0.95254 0.86551 0.79432 0.82704 0.78653 1.20259 1.21334 1.20173 1.21111 0.93408 0.90208 1.50785 0.92075 1.19609 0.90509 0.86969 0.95945 1.60748 1.20648 1.00113 1.48264 1.22324 0.96227 0.89346 0.94536 0.92099 1.24588 1.01488 1.01065 0.93745 0.87228 1.22237 0.95985 1.02076 0.96722 1.24055 0.96886 0.94999 0.86405 1.88319 1.79545 1.45251 1.15655 1.23895 0.91146 0.93402 0.92916 0.87260 1.21739 0.95041 0.96058 0.92185 1.21609 0.97354 0.92962 1.01871 1.21509 0.99554 0.97353 0.96915 1.21515 0.99233 0.97524 0.97258 1.21499 0.98211 0.94907 1.00712 1.21481 0.99248 0.98130 0.95849 0.92821 0.99378 0.95281 0.84640 0.92069 0.89061 0.90417 0.92196 0.90359 0.91637 0.92444 0.91499 0.92269 0.92539 0.92339 0.91875 0.91502 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.26 9.32 -34.44 -0.32 -14.58 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.20 4.98 5.28 -4.98 -0.03 4.95 16 10 N -0.67 -13.52 4.53 -121.33 -0.55 -14.07 16 11 C 0.09 1.52 3.96 -79.79 -0.32 1.20 16 12 H 0.06 1.13 7.88 -51.93 -0.41 0.72 16 13 C -0.19 -3.06 4.32 -101.90 -0.44 -3.50 16 14 H 0.11 1.64 5.05 -51.93 -0.26 1.37 16 15 C -0.13 -2.10 6.76 -25.69 -0.17 -2.27 16 16 C 0.05 0.76 7.75 38.63 0.30 1.06 16 17 O -0.37 -6.01 11.47 -32.70 -0.37 -6.38 16 18 C 0.04 0.71 4.26 -38.35 -0.16 0.55 16 19 H 0.11 1.97 6.16 -51.93 -0.32 1.65 16 20 C -0.05 -0.71 0.86 -168.10 -0.14 -0.86 16 21 C -0.10 -1.27 4.95 -26.87 -0.13 -1.41 16 22 C -0.12 -1.32 5.94 -26.66 -0.16 -1.48 16 23 C -0.12 -1.27 5.87 -26.74 -0.16 -1.43 16 24 C -0.12 -1.37 5.94 -26.66 -0.16 -1.53 16 25 C -0.11 -1.49 4.81 -26.88 -0.13 -1.62 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H -0.01 -0.31 8.14 -51.92 -0.42 -0.74 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.33 6.51 6.26 -39.29 -0.25 6.26 16 30 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.00 5.32 -51.93 -0.28 0.73 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.01 6.40 -51.93 -0.33 0.68 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -28.81 322.51 -9.76 -38.57 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.29 Total: 5.70 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.12 Total: -19.38 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.19 Total: -39.78 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.37 Total: -6.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.81 -9.76 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713486311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.302 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds