Wall clock time and date at job start Mon Mar 30 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47052 * 240.00049 * 3 2 1 5 5 H 1.48493 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46878 * 120.00402 * 3 2 1 7 7 C 1.37879 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00269 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47444 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00243 * 179.97438 * 10 9 7 12 12 H 1.09002 * 113.53709 * 20.76832 * 11 10 9 13 13 C 1.50483 * 114.57101 * 246.45980 * 11 10 9 14 14 H 1.08994 * 114.34182 * 175.03861 * 13 11 10 15 15 C 1.52157 * 127.38403 * 19.94491 * 13 11 10 16 16 C 1.55766 * 102.07924 * 241.54467 * 15 13 11 17 17 O 1.46066 * 105.53206 * 6.33316 * 16 15 13 18 18 C 1.39915 * 103.64465 * 29.94164 * 17 16 15 19 19 H 1.09000 * 110.35557 * 64.95267 * 18 17 16 20 20 C 1.48527 * 135.13026 * 221.10920 * 18 17 16 21 21 C 1.52574 * 116.79789 * 24.89233 * 20 18 17 22 22 C 1.53147 * 109.34697 * 275.50376 * 21 20 18 23 23 C 1.52982 * 109.42321 * 302.42579 * 22 21 20 24 24 C 1.52996 * 109.60538 * 61.93451 * 23 22 21 25 25 C 1.52574 * 116.79618 * 246.15715 * 20 18 17 26 26 H 0.97001 * 119.99826 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.46974 * 60.00157 * 9 7 2 28 28 H 1.09002 * 109.47190 * 300.00797 * 9 7 2 29 29 H 1.00904 * 111.00149 * 303.96056 * 10 9 7 30 30 H 1.09007 * 110.89710 * 123.41587 * 15 13 11 31 31 H 1.08998 * 110.92156 * 359.68809 * 15 13 11 32 32 H 1.09002 * 110.25101 * 247.29038 * 16 15 13 33 33 H 1.09002 * 110.24668 * 125.37239 * 16 15 13 34 34 H 1.08991 * 109.49264 * 35.46751 * 21 20 18 35 35 H 1.08999 * 109.48931 * 155.54396 * 21 20 18 36 36 H 1.08998 * 109.47648 * 182.44432 * 22 21 20 37 37 H 1.09006 * 109.48067 * 62.41527 * 22 21 20 38 38 H 1.08995 * 109.45177 * 301.89523 * 23 22 21 39 39 H 1.08998 * 109.42656 * 181.96027 * 23 22 21 40 40 H 1.09001 * 109.47534 * 178.09612 * 24 23 22 41 41 H 1.08997 * 109.47778 * 58.06725 * 24 23 22 42 42 H 1.09004 * 109.48665 * 204.46787 * 25 20 18 43 43 H 1.08996 * 109.49154 * 324.51210 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5053 -4.9070 -0.0012 12 1 0.4760 -4.8442 -0.3544 13 6 1.6889 -5.7178 1.2531 14 1 1.1008 -6.6349 1.2854 15 6 2.1286 -5.2169 2.6210 16 6 3.4528 -6.0053 2.8467 17 8 3.7063 -6.7111 1.5933 18 6 3.1361 -5.8783 0.6243 19 1 3.6670 -4.9272 0.5819 20 6 2.3269 -6.0915 -0.6027 21 6 1.5092 -7.3777 -0.6725 22 6 2.3960 -8.5154 -1.1869 23 6 2.9658 -8.1374 -2.5554 24 6 3.8378 -6.8874 -2.4209 25 6 2.9792 -5.7181 -1.9304 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8400 -3.5483 -0.7836 30 1 1.3914 -5.4699 3.3831 31 1 2.3148 -4.1431 2.6008 32 1 3.3334 -6.7175 3.6632 33 1 4.2695 -5.3168 3.0638 34 1 1.1378 -7.6270 0.3214 35 1 0.6677 -7.2373 -1.3510 36 1 1.8030 -9.4253 -1.2788 37 1 3.2141 -8.6838 -0.4864 38 1 2.1472 -7.9362 -3.2464 39 1 3.5689 -8.9612 -2.9371 40 1 4.2697 -6.6397 -3.3906 41 1 4.6370 -7.0772 -1.7046 42 1 2.2058 -5.5006 -2.6671 43 1 3.6075 -4.8382 -1.7922 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713486311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:21 Heat of formation + Delta-G solvation = 19.028457 kcal Electronic energy + Delta-G solvation = -21634.197854 eV Core-core repulsion = 18681.463883 eV Total energy + Delta-G solvation = -2952.733971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.36265 -38.73404 -37.06149 -35.32694 -33.52989 -32.08662 -31.73167 -28.80168 -28.06943 -25.09255 -25.03151 -23.70046 -23.02709 -21.79251 -20.54032 -19.53845 -18.51955 -17.52410 -17.07127 -16.57708 -16.27966 -16.23698 -15.58536 -15.27482 -14.84317 -14.63832 -14.40596 -14.24828 -14.01926 -13.63348 -13.35921 -13.29378 -12.83706 -12.76194 -12.67237 -12.39656 -12.25397 -12.08065 -11.99905 -11.80287 -11.69726 -11.39790 -11.33539 -10.98695 -10.71554 -10.69820 -10.60902 -9.75525 -9.11634 -8.23687 -6.34941 1.40315 1.43347 1.51364 2.25516 2.38353 3.05910 3.10213 3.41322 3.56131 3.79273 3.89159 4.02651 4.18069 4.23254 4.28393 4.32690 4.41608 4.44132 4.50534 4.61480 4.64269 4.71953 4.77595 4.84180 4.93092 4.98433 5.02559 5.09014 5.14474 5.19573 5.19956 5.28831 5.29394 5.37058 5.39603 5.45128 5.51139 5.60664 5.62400 6.00844 6.08136 6.39564 6.66600 6.85639 7.36028 8.87659 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.005555 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.198622 B = 5039.481631 C = 5616.008622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.215 3.785 10 N -0.658 5.658 11 C 0.067 3.933 12 H 0.046 0.954 13 C -0.194 4.194 14 H 0.130 0.870 15 C -0.134 4.134 16 C 0.055 3.945 17 O -0.375 6.375 18 C 0.051 3.949 19 H 0.086 0.914 20 C -0.027 4.027 21 C -0.100 4.100 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.111 4.111 25 C -0.112 4.112 26 H 0.265 0.735 27 H -0.039 1.039 28 H -0.003 1.003 29 H 0.338 0.662 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 -16.573 -1.470 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.088 3.912 10 N -0.290 5.290 11 C -0.044 4.044 12 H 0.064 0.936 13 C -0.212 4.212 14 H 0.147 0.853 15 C -0.172 4.172 16 C -0.020 4.020 17 O -0.294 6.294 18 C -0.007 4.007 19 H 0.103 0.897 20 C -0.028 4.028 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.150 4.150 26 H 0.074 0.926 27 H -0.021 1.021 28 H 0.015 0.985 29 H 0.158 0.842 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.555 -16.622 -0.809 17.545 hybrid contribution -0.448 1.530 -0.588 1.700 sum 5.107 -15.092 -1.397 15.994 Atomic orbital electron populations 1.70084 1.07789 1.28042 1.51356 1.25910 0.95724 1.03252 0.94546 0.85413 0.78128 0.77800 0.79123 1.19073 1.20826 1.19456 1.21468 0.93703 0.91351 1.50816 0.91833 1.19184 0.90446 0.88519 0.93062 1.60607 1.19653 1.00217 1.48544 1.22413 0.95813 0.89158 0.96975 0.93554 1.24736 1.01839 1.01173 0.93491 0.85319 1.22227 0.97468 1.00290 0.97233 1.24159 0.95837 0.95549 0.86503 1.88308 1.79646 1.45302 1.16135 1.23671 0.90667 0.92653 0.93735 0.89708 1.21663 0.93843 0.95345 0.91961 1.21642 0.97569 0.92237 1.02308 1.21480 0.99108 0.97400 0.96858 1.21525 0.99427 0.97338 0.97064 1.21472 0.97804 0.94581 1.01033 1.21500 0.99414 0.98691 0.95394 0.92624 1.02084 0.98460 0.84184 0.90470 0.92362 0.87446 0.92083 0.90301 0.90845 0.90414 0.92608 0.91644 0.90809 0.91014 0.92668 0.91432 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -30.35 9.32 25.60 0.24 -30.11 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.22 11.52 5.28 85.56 0.45 11.97 16 10 N -0.66 -27.97 4.53 -537.79 -2.43 -30.40 16 11 C 0.07 2.42 3.96 37.09 0.15 2.56 16 12 H 0.05 1.80 7.88 -2.39 -0.02 1.78 16 13 C -0.19 -6.21 4.32 -18.10 -0.08 -6.29 16 14 H 0.13 3.67 5.05 -2.39 -0.01 3.66 16 15 C -0.13 -4.24 6.76 31.27 0.21 -4.03 16 16 C 0.06 1.52 7.75 72.94 0.57 2.08 16 17 O -0.37 -11.70 11.47 -139.93 -1.60 -13.31 16 18 C 0.05 1.62 4.26 23.07 0.10 1.72 16 19 H 0.09 3.12 6.16 -2.39 -0.01 3.11 16 20 C -0.03 -0.77 0.86 -60.99 -0.05 -0.82 16 21 C -0.10 -2.35 4.95 30.50 0.15 -2.20 16 22 C -0.11 -2.22 5.94 30.64 0.18 -2.04 16 23 C -0.12 -2.16 5.87 30.59 0.18 -1.98 16 24 C -0.11 -2.43 5.94 30.64 0.18 -2.24 16 25 C -0.11 -2.99 4.81 30.50 0.15 -2.84 16 26 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 27 H -0.04 -2.22 8.14 -2.38 -0.02 -2.24 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.34 13.73 6.26 -89.69 -0.56 13.17 16 30 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 32 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.85 5.32 -2.39 -0.01 1.83 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.06 1.67 6.40 -2.39 -0.02 1.66 16 Total: -1.00 -62.94 322.51 1.58 -61.36 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.42 Total: 25.73 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 2.88 Total: -33.54 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -2.15 Total: -86.45 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.60 Total: -13.31 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -62.94 1.58 -61.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713486311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.388 kcal (2) G-P(sol) polarization free energy of solvation -62.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds