Wall clock time and date at job start Mon Mar 30 2020 07:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47199 * 270.00076 * 3 2 1 5 5 H 1.48508 * 109.46998 * 29.99717 * 3 2 1 6 6 H 1.48493 * 109.47294 * 149.99877 * 3 2 1 7 7 C 1.37876 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99821 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47000 * 174.21172 * 9 7 2 11 11 C 1.46899 * 110.99809 * 159.89786 * 10 9 7 12 12 C 1.53003 * 109.47069 * 189.99769 * 11 10 9 13 13 H 1.08996 * 109.82484 * 305.89337 * 12 11 10 14 14 C 1.54379 * 109.83141 * 185.00389 * 12 11 10 15 15 C 1.55308 * 102.25155 * 219.04229 * 14 12 11 16 16 C 1.54947 * 100.94403 * 34.13404 * 15 14 12 17 17 H 1.08996 * 110.31472 * 82.56771 * 16 15 14 18 18 C 1.53002 * 110.30935 * 204.64449 * 16 15 14 19 19 C 1.52999 * 117.49669 * 178.61110 * 18 16 15 20 20 C 1.52997 * 60.00306 * 107.48378 * 19 18 16 21 21 O 1.43382 * 109.82360 * 66.84469 * 12 11 10 22 22 C 1.46894 * 111.00119 * 283.85449 * 10 9 7 23 23 C 1.53000 * 117.50013 * 137.92324 * 22 10 9 24 24 C 1.53004 * 117.49832 * 69.26650 * 22 10 9 25 25 H 0.96999 * 120.00602 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47271 * 54.21539 * 9 7 2 27 27 H 1.08999 * 109.47312 * 294.21167 * 9 7 2 28 28 H 1.09004 * 109.47130 * 70.00347 * 11 10 9 29 29 H 1.08991 * 109.47489 * 310.00503 * 11 10 9 30 30 H 1.08992 * 110.84734 * 100.85090 * 14 12 11 31 31 H 1.09006 * 111.02268 * 337.30537 * 14 12 11 32 32 H 1.08997 * 111.12486 * 276.21393 * 15 14 12 33 33 H 1.09004 * 111.12265 * 152.05272 * 15 14 12 34 34 H 1.08996 * 115.56105 * 32.91567 * 18 16 15 35 35 H 1.08998 * 117.49885 * 359.97438 * 19 18 16 36 36 H 1.09001 * 117.49726 * 214.97720 * 19 18 16 37 37 H 1.08998 * 117.49957 * 107.48331 * 20 19 18 38 38 H 1.09002 * 117.50166 * 252.48411 * 20 19 18 39 39 H 1.08998 * 115.55150 * 283.59601 * 22 10 9 40 40 H 1.09000 * 117.49917 * 0.02562 * 23 22 10 41 41 H 1.09007 * 117.49898 * 145.02223 * 23 22 10 42 42 H 1.09006 * 117.49601 * 214.98328 * 24 22 10 43 43 H 1.08994 * 117.49696 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.1996 -3.6122 -0.1376 11 6 1.6039 -4.8725 0.3257 12 6 2.6866 -5.9509 0.4013 13 1 3.1987 -6.0285 -0.5578 14 6 2.0489 -7.3088 0.7658 15 6 3.1001 -7.9174 1.7336 16 6 3.6187 -6.6420 2.4445 17 1 2.9476 -6.3620 3.2564 18 6 5.0332 -6.8709 2.9807 19 6 5.7188 -5.6998 3.6876 20 6 5.2175 -6.8958 4.4994 21 8 3.6282 -5.6232 1.4318 22 6 2.6718 -3.7312 -1.5235 23 6 4.1602 -4.0109 -1.7412 24 6 3.5874 -2.6266 -2.0551 25 1 -0.4851 0.8400 -0.0004 26 1 0.5487 -2.5139 -0.8316 27 1 0.7048 -2.6025 0.9392 28 1 0.8275 -5.1856 -0.3724 29 1 1.1669 -4.7264 1.3134 30 1 1.9307 -7.9322 -0.1204 31 1 1.0926 -7.1688 1.2700 32 1 3.8998 -8.4132 1.1835 33 1 2.6321 -8.5998 2.4431 34 1 5.6594 -7.5365 2.3867 35 1 5.1622 -4.7663 3.7702 36 1 6.7960 -5.5951 3.5586 37 1 5.9649 -7.5780 4.9045 38 1 4.3312 -6.7492 5.1168 39 1 1.9676 -4.1813 -2.2231 40 1 4.7890 -4.1071 -0.8560 41 1 4.4352 -4.6448 -2.5843 42 1 3.4856 -2.3503 -3.1047 43 1 3.8390 -1.8115 -1.3767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715413286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:09 Heat of formation + Delta-G solvation = 10.137287 kcal Electronic energy + Delta-G solvation = -20907.642759 eV Core-core repulsion = 17954.523238 eV Total energy + Delta-G solvation = -2953.119521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.61604 -37.56716 -36.43752 -33.51266 -32.42929 -31.85753 -29.72409 -26.87860 -24.60403 -22.40590 -22.18450 -22.01267 -21.52345 -20.98225 -20.08777 -19.18743 -16.60750 -16.42061 -16.24478 -14.96590 -14.72828 -14.53312 -14.48655 -14.06627 -13.62613 -13.22370 -13.08767 -12.40667 -12.12906 -12.07182 -11.57643 -11.50843 -11.43810 -11.20478 -11.14293 -11.07647 -10.78384 -10.69645 -10.64729 -10.48479 -10.25226 -9.97541 -9.78744 -9.51845 -9.20756 -9.05619 -8.86532 -8.32360 -7.12614 -5.93586 -3.92591 3.36780 3.42853 3.47672 3.60829 4.26890 4.47843 4.53439 4.62082 4.68229 4.83471 4.95243 5.02558 5.12002 5.23855 5.32425 5.41519 5.50854 5.52856 5.63076 5.74465 5.75995 5.80053 5.83435 5.87984 5.94966 5.97415 6.06716 6.12670 6.20368 6.27613 6.30662 6.33248 6.46446 6.59981 6.84912 7.13427 7.28580 7.45742 7.51857 7.95257 8.21818 8.32758 8.65546 9.14215 9.69708 11.17165 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.005198 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.956002 B = 5385.667319 C = 5820.196013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.492 4.492 8 H 0.068 0.932 9 C 0.195 3.805 10 N -0.500 5.500 11 C 0.051 3.949 12 C 0.089 3.911 13 H 0.080 0.920 14 C -0.154 4.154 15 C -0.146 4.146 16 C 0.105 3.895 17 H 0.065 0.935 18 C -0.152 4.152 19 C -0.164 4.164 20 C -0.179 4.179 21 O -0.344 6.344 22 C 0.024 3.976 23 C -0.184 4.184 24 C -0.156 4.156 25 H 0.259 0.741 26 H -0.004 1.004 27 H 0.022 0.978 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 -16.204 2.996 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.086 0.914 9 C 0.071 3.929 10 N -0.224 5.224 11 C -0.078 4.078 12 C 0.031 3.969 13 H 0.098 0.902 14 C -0.192 4.192 15 C -0.183 4.183 16 C 0.048 3.952 17 H 0.083 0.917 18 C -0.170 4.170 19 C -0.201 4.201 20 C -0.217 4.217 21 O -0.263 6.263 22 C -0.086 4.086 23 C -0.222 4.222 24 C -0.193 4.193 25 H 0.069 0.931 26 H 0.014 0.986 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.523 -15.773 3.306 17.785 hybrid contribution -0.616 0.563 -0.585 1.020 sum 6.907 -15.210 2.721 16.925 Atomic orbital electron populations 1.69957 1.06026 1.26508 1.51863 1.24976 0.94808 0.99129 0.95880 0.86573 0.79893 0.83454 0.77985 1.20798 1.21422 1.19777 1.21235 0.93544 0.89631 1.48636 0.91437 1.19709 0.89813 0.87612 0.95779 1.61848 1.40479 1.02963 1.17081 1.22404 0.94102 0.91156 1.00094 1.22798 0.90103 0.92040 0.91990 0.90194 1.23189 0.99313 0.96767 0.99950 1.23243 0.98736 0.97861 0.98510 1.22429 0.93653 0.87390 0.91764 0.91679 1.22328 0.97367 1.03027 0.94300 1.22841 1.00460 0.93772 1.03043 1.22964 1.03405 1.02300 0.92982 1.88676 1.60509 1.44293 1.32844 1.22058 0.91458 1.04083 0.90957 1.23053 0.96960 1.00024 1.02122 1.23102 1.02576 0.93035 1.00577 0.93139 0.98638 0.95967 0.95342 0.91116 0.90463 0.90563 0.90612 0.90425 0.87847 0.88024 0.89012 0.88919 0.88844 0.91781 0.88496 0.90611 0.90403 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.49 -13.91 7.81 -34.44 -0.27 -14.18 16 8 H 0.07 1.91 5.78 -52.49 -0.30 1.60 16 9 C 0.20 5.20 4.77 -4.98 -0.02 5.18 16 10 N -0.50 -11.13 4.55 -228.09 -1.04 -12.17 16 11 C 0.05 0.96 4.48 -3.82 -0.02 0.94 16 12 C 0.09 1.39 3.41 -26.01 -0.09 1.30 16 13 H 0.08 1.28 6.27 -51.93 -0.33 0.95 16 14 C -0.15 -1.83 6.54 -24.78 -0.16 -1.99 16 15 C -0.15 -1.57 6.57 -24.48 -0.16 -1.73 16 16 C 0.11 1.40 3.61 -25.70 -0.09 1.30 16 17 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 18 C -0.15 -1.79 5.46 -90.62 -0.50 -2.28 16 19 C -0.16 -1.99 10.22 -26.73 -0.27 -2.26 16 20 C -0.18 -1.82 10.19 -26.73 -0.27 -2.09 16 21 O -0.34 -5.88 10.66 -35.23 -0.38 -6.26 16 22 C 0.02 0.48 4.19 -67.71 -0.28 0.20 16 23 C -0.18 -3.24 9.15 -26.69 -0.24 -3.48 16 24 C -0.16 -3.12 9.48 -26.69 -0.25 -3.37 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.00 -0.12 7.99 -51.93 -0.42 -0.54 16 27 H 0.02 0.63 7.73 -51.93 -0.40 0.23 16 28 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.07 1.37 7.82 -51.93 -0.41 0.96 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 32 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.13 7.98 -51.93 -0.41 0.71 16 35 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 41 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.12 2.64 5.43 -51.93 -0.28 2.36 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -30.56 341.22 -10.85 -41.41 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.56 Total: 2.42 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.73 Total: -21.06 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.30 Total: -38.64 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.38 Total: -6.26 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.56 -10.85 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715413286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.548 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds