Wall clock time and date at job start Mon Mar 30 2020 07:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47199 * 270.00076 * 3 2 1 5 5 H 1.48508 * 109.46998 * 29.99717 * 3 2 1 6 6 H 1.48493 * 109.47294 * 149.99877 * 3 2 1 7 7 C 1.37876 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99821 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47000 * 174.21172 * 9 7 2 11 11 C 1.46899 * 110.99809 * 159.89786 * 10 9 7 12 12 C 1.53003 * 109.47069 * 189.99769 * 11 10 9 13 13 H 1.08996 * 109.82484 * 305.89337 * 12 11 10 14 14 C 1.54379 * 109.83141 * 185.00389 * 12 11 10 15 15 C 1.55308 * 102.25155 * 219.04229 * 14 12 11 16 16 C 1.54947 * 100.94403 * 34.13404 * 15 14 12 17 17 H 1.08996 * 110.31472 * 82.56771 * 16 15 14 18 18 C 1.53002 * 110.30935 * 204.64449 * 16 15 14 19 19 C 1.52999 * 117.49669 * 178.61110 * 18 16 15 20 20 C 1.52997 * 60.00306 * 107.48378 * 19 18 16 21 21 O 1.43382 * 109.82360 * 66.84469 * 12 11 10 22 22 C 1.46894 * 111.00119 * 283.85449 * 10 9 7 23 23 C 1.53000 * 117.50013 * 137.92324 * 22 10 9 24 24 C 1.53004 * 117.49832 * 69.26650 * 22 10 9 25 25 H 0.96999 * 120.00602 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47271 * 54.21539 * 9 7 2 27 27 H 1.08999 * 109.47312 * 294.21167 * 9 7 2 28 28 H 1.09004 * 109.47130 * 70.00347 * 11 10 9 29 29 H 1.08991 * 109.47489 * 310.00503 * 11 10 9 30 30 H 1.08992 * 110.84734 * 100.85090 * 14 12 11 31 31 H 1.09006 * 111.02268 * 337.30537 * 14 12 11 32 32 H 1.08997 * 111.12486 * 276.21393 * 15 14 12 33 33 H 1.09004 * 111.12265 * 152.05272 * 15 14 12 34 34 H 1.08996 * 115.56105 * 32.91567 * 18 16 15 35 35 H 1.08998 * 117.49885 * 359.97438 * 19 18 16 36 36 H 1.09001 * 117.49726 * 214.97720 * 19 18 16 37 37 H 1.08998 * 117.49957 * 107.48331 * 20 19 18 38 38 H 1.09002 * 117.50166 * 252.48411 * 20 19 18 39 39 H 1.08998 * 115.55150 * 283.59601 * 22 10 9 40 40 H 1.09000 * 117.49917 * 0.02562 * 23 22 10 41 41 H 1.09007 * 117.49898 * 145.02223 * 23 22 10 42 42 H 1.09006 * 117.49601 * 214.98328 * 24 22 10 43 43 H 1.08994 * 117.49696 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.1996 -3.6122 -0.1376 11 6 1.6039 -4.8725 0.3257 12 6 2.6866 -5.9509 0.4013 13 1 3.1987 -6.0285 -0.5578 14 6 2.0489 -7.3088 0.7658 15 6 3.1001 -7.9174 1.7336 16 6 3.6187 -6.6420 2.4445 17 1 2.9476 -6.3620 3.2564 18 6 5.0332 -6.8709 2.9807 19 6 5.7188 -5.6998 3.6876 20 6 5.2175 -6.8958 4.4994 21 8 3.6282 -5.6232 1.4318 22 6 2.6718 -3.7312 -1.5235 23 6 4.1602 -4.0109 -1.7412 24 6 3.5874 -2.6266 -2.0551 25 1 -0.4851 0.8400 -0.0004 26 1 0.5487 -2.5139 -0.8316 27 1 0.7048 -2.6025 0.9392 28 1 0.8275 -5.1856 -0.3724 29 1 1.1669 -4.7264 1.3134 30 1 1.9307 -7.9322 -0.1204 31 1 1.0926 -7.1688 1.2700 32 1 3.8998 -8.4132 1.1835 33 1 2.6321 -8.5998 2.4431 34 1 5.6594 -7.5365 2.3867 35 1 5.1622 -4.7663 3.7702 36 1 6.7960 -5.5951 3.5586 37 1 5.9649 -7.5780 4.9045 38 1 4.3312 -6.7492 5.1168 39 1 1.9676 -4.1813 -2.2231 40 1 4.7890 -4.1071 -0.8560 41 1 4.4352 -4.6448 -2.5843 42 1 3.4856 -2.3503 -3.1047 43 1 3.8390 -1.8115 -1.3767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715413286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:08 Heat of formation + Delta-G solvation = -8.026975 kcal Electronic energy + Delta-G solvation = -20908.430421 eV Core-core repulsion = 17954.523238 eV Total energy + Delta-G solvation = -2953.907182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76639 -39.09575 -37.47839 -35.33470 -34.37830 -32.94418 -31.18781 -28.68905 -26.07864 -24.16948 -23.28126 -23.11186 -23.04509 -22.11479 -21.27176 -20.73058 -18.59023 -17.63196 -17.30730 -16.72566 -16.49389 -15.98680 -15.59531 -15.39351 -15.13891 -14.71917 -14.24479 -14.11440 -13.79645 -13.31861 -13.18146 -12.90615 -12.81105 -12.62824 -12.49829 -12.37037 -12.31831 -12.16386 -12.11845 -11.70681 -11.62327 -11.24390 -11.16446 -11.00993 -10.88527 -10.70596 -10.53883 -10.26819 -8.92681 -8.15700 -6.23231 1.39642 1.40908 1.52405 2.41270 2.62842 3.05392 3.15242 3.20096 3.41357 3.62152 3.68160 3.85658 4.07275 4.16217 4.19874 4.20421 4.27690 4.30877 4.39843 4.47334 4.60162 4.64025 4.72013 4.79351 4.81875 4.88336 4.91553 4.92969 5.03445 5.07257 5.10897 5.14619 5.20672 5.28929 5.32345 5.38086 5.40076 5.51287 5.77344 6.11370 6.35290 6.46672 6.71628 6.91887 7.44328 8.94922 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.005198 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.956002 B = 5385.667319 C = 5820.196013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.212 3.788 10 N -0.510 5.510 11 C 0.050 3.950 12 C 0.093 3.907 13 H 0.081 0.919 14 C -0.148 4.148 15 C -0.132 4.132 16 C 0.094 3.906 17 H 0.053 0.947 18 C -0.156 4.156 19 C -0.186 4.186 20 C -0.157 4.157 21 O -0.377 6.377 22 C 0.003 3.997 23 C -0.142 4.142 24 C -0.171 4.171 25 H 0.262 0.738 26 H -0.034 1.034 27 H -0.008 1.008 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 -18.114 2.580 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.086 3.914 10 N -0.234 5.234 11 C -0.079 4.079 12 C 0.035 3.965 13 H 0.099 0.901 14 C -0.186 4.186 15 C -0.170 4.170 16 C 0.037 3.963 17 H 0.071 0.929 18 C -0.174 4.174 19 C -0.223 4.223 20 C -0.194 4.194 21 O -0.297 6.297 22 C -0.106 4.106 23 C -0.180 4.180 24 C -0.209 4.209 25 H 0.071 0.929 26 H -0.017 1.017 27 H 0.010 0.990 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.243 -17.707 2.893 20.183 hybrid contribution -1.164 1.141 -0.425 1.684 sum 8.080 -16.566 2.468 18.596 Atomic orbital electron populations 1.70087 1.07651 1.27565 1.52742 1.25849 0.95647 1.02874 0.95331 0.85487 0.78560 0.78783 0.78463 1.19647 1.20894 1.19212 1.21482 0.93508 0.90621 1.48402 0.91700 1.19343 0.89752 0.89406 0.92912 1.61779 1.39293 1.03355 1.18956 1.22510 0.95657 0.90734 0.98954 1.22727 0.89124 0.92575 0.92035 0.90100 1.23179 0.99353 0.94759 1.01316 1.23216 0.98635 0.96766 0.98350 1.22637 0.94692 0.87975 0.90988 0.92924 1.22384 0.96548 1.02816 0.95618 1.22814 1.00765 0.93327 1.05381 1.23046 1.03623 1.00756 0.91928 1.88645 1.60710 1.46487 1.33856 1.22192 0.93205 1.05333 0.89889 1.23011 0.94087 0.98271 1.02602 1.23059 1.03692 0.93226 1.00880 0.92938 1.01671 0.98997 0.94689 0.92966 0.88099 0.90582 0.89197 0.88127 0.86422 0.90956 0.88007 0.86442 0.88768 0.91004 0.89588 0.86726 0.88600 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.21 13.29 21.45 0.28 -57.93 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.50 -29.39 7.81 25.60 0.20 -29.19 16 8 H 0.06 3.78 5.78 -2.91 -0.02 3.76 16 9 C 0.21 11.88 4.77 85.56 0.41 12.29 16 10 N -0.51 -23.49 4.55 -875.54 -3.98 -27.47 16 11 C 0.05 1.91 4.48 86.30 0.39 2.30 16 12 C 0.09 2.85 3.41 31.06 0.11 2.95 16 13 H 0.08 2.44 6.27 -2.39 -0.01 2.42 16 14 C -0.15 -3.18 6.54 31.86 0.21 -2.97 16 15 C -0.13 -2.45 6.57 32.05 0.21 -2.24 16 16 C 0.09 2.40 3.61 31.26 0.11 2.51 16 17 H 0.05 1.43 7.95 -2.39 -0.02 1.41 16 18 C -0.16 -3.40 5.46 -10.79 -0.06 -3.46 16 19 C -0.19 -4.44 10.22 30.59 0.31 -4.13 16 20 C -0.16 -2.86 10.19 30.60 0.31 -2.55 16 21 O -0.38 -12.87 10.66 -148.98 -1.59 -14.45 16 22 C 0.00 0.11 4.19 44.92 0.19 0.30 16 23 C -0.14 -4.75 9.15 30.62 0.28 -4.47 16 24 C -0.17 -6.80 9.48 30.62 0.29 -6.51 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H -0.03 -2.10 7.99 -2.39 -0.02 -2.12 16 27 H -0.01 -0.49 7.73 -2.39 -0.02 -0.51 16 28 H 0.04 1.28 8.12 -2.38 -0.02 1.26 16 29 H 0.05 2.14 7.82 -2.39 -0.02 2.12 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.64 7.86 -2.38 -0.02 1.62 16 32 H 0.09 1.45 7.94 -2.39 -0.02 1.43 16 33 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.12 2.23 7.98 -2.39 -0.02 2.21 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 39 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 42 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 43 H 0.09 3.98 5.43 -2.39 -0.01 3.97 16 Total: -1.00 -68.75 341.22 1.12 -67.63 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.96 Total: 19.00 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 3.42 Total: -34.69 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -3.69 Total: -85.39 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.59 Total: -14.45 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -68.75 1.12 -67.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715413286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.606 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds