Wall clock time and date at job start Mon Mar 30 2020 07:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48500 * 109.47415 * 270.00450 * 3 2 1 5 5 H 1.48507 * 109.46880 * 30.00020 * 3 2 1 6 6 H 1.48496 * 109.47099 * 150.00130 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00529 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47631 * 185.19224 * 9 7 2 11 11 C 1.46905 * 110.99792 * 70.61511 * 10 9 7 12 12 C 1.53005 * 109.47281 * 190.00352 * 11 10 9 13 13 H 1.09007 * 110.54504 * 303.57006 * 12 11 10 14 14 C 1.54991 * 110.61799 * 180.52500 * 12 11 10 15 15 C 1.54814 * 102.08979 * 204.47469 * 14 12 11 16 16 C 1.54108 * 104.18873 * 20.87673 * 15 14 12 17 17 H 1.09005 * 109.87625 * 242.60751 * 16 15 14 18 18 C 1.52994 * 110.00412 * 121.52819 * 16 15 14 19 19 C 1.53003 * 117.49873 * 249.39165 * 18 16 15 20 20 C 1.52997 * 117.49914 * 180.72929 * 18 16 15 21 21 O 1.43742 * 107.29105 * 2.03056 * 16 15 14 22 22 C 1.46903 * 111.00168 * 194.56265 * 10 9 7 23 23 C 1.52994 * 117.49731 * 353.67637 * 22 10 9 24 24 C 1.52996 * 117.49494 * 62.33983 * 22 10 9 25 25 H 0.97006 * 120.00237 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46926 * 65.19165 * 9 7 2 27 27 H 1.09006 * 109.46819 * 305.19515 * 9 7 2 28 28 H 1.09001 * 109.46977 * 309.99943 * 11 10 9 29 29 H 1.08994 * 109.47600 * 69.99838 * 11 10 9 30 30 H 1.09000 * 110.90531 * 322.66555 * 14 12 11 31 31 H 1.08990 * 110.91085 * 86.27362 * 14 12 11 32 32 H 1.09003 * 110.48565 * 262.20584 * 15 14 12 33 33 H 1.09001 * 110.60616 * 139.60960 * 15 14 12 34 34 H 1.09001 * 115.54827 * 35.05609 * 18 16 15 35 35 H 1.08997 * 117.49543 * 359.97438 * 19 18 16 36 36 H 1.08991 * 117.50087 * 145.02201 * 19 18 16 37 37 H 1.09003 * 117.49392 * 214.98016 * 20 18 16 38 38 H 1.09002 * 117.49963 * 359.97178 * 20 18 16 39 39 H 1.08997 * 115.54759 * 208.00605 * 22 10 9 40 40 H 1.09003 * 117.49995 * 214.99682 * 23 22 10 41 41 H 1.08994 * 117.50147 * 0.02562 * 23 22 10 42 42 H 1.08999 * 117.49939 * 359.96913 * 24 22 10 43 43 H 1.09005 * 117.49935 * 144.97328 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5733 -0.1269 11 6 3.7469 -3.1013 -1.4741 12 6 4.0374 -4.6034 -1.4964 13 1 5.0588 -4.8004 -1.1707 14 6 3.7900 -5.1862 -2.9111 15 6 3.5037 -6.6760 -2.6025 16 6 3.0873 -6.6812 -1.1187 17 1 3.7986 -7.2668 -0.5363 18 6 1.6836 -7.2715 -0.9711 19 6 0.5558 -6.3198 -0.5670 20 6 1.0917 -7.3426 0.4379 21 8 3.0934 -5.3161 -0.6685 22 6 5.4282 -2.6583 0.2110 23 6 6.1712 -1.3469 0.4735 24 6 5.8399 -2.2854 1.6366 25 1 -0.4851 0.8401 -0.0004 26 1 3.8752 -0.7631 0.9317 27 1 3.8745 -0.6016 -0.8410 28 1 2.7042 -2.9290 -1.7411 29 1 4.3938 -2.5955 -2.1907 30 1 2.9275 -4.7136 -3.3810 31 1 4.6772 -5.0818 -3.5354 32 1 4.4023 -7.2754 -2.7486 33 1 2.6921 -7.0482 -3.2278 34 1 1.4379 -8.0785 -1.6616 35 1 0.8141 -5.2732 -0.4060 36 1 -0.4318 -6.5008 -0.9912 37 1 0.4563 -8.1962 0.6744 38 1 1.7025 -6.9692 1.2598 39 1 5.9803 -3.4603 -0.2788 40 1 7.2124 -1.2862 0.1564 41 1 5.6012 -0.4212 0.3958 42 1 5.0519 -1.9765 2.3235 43 1 6.6627 -2.8423 2.0848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715413291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:18 Heat of formation + Delta-G solvation = 16.082429 kcal Electronic energy + Delta-G solvation = -21132.800357 eV Core-core repulsion = 18179.938637 eV Total energy + Delta-G solvation = -2952.861720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.64379 -38.09508 -36.14421 -33.63539 -32.30380 -31.82837 -29.81226 -27.35390 -24.84887 -22.45808 -22.16798 -21.88765 -21.74515 -20.87813 -20.04047 -18.76383 -17.03486 -16.38084 -15.74880 -15.42602 -15.25635 -14.77616 -14.26218 -14.02618 -13.44694 -13.39262 -12.89784 -12.62760 -12.30942 -11.88585 -11.85400 -11.55258 -11.40122 -11.17480 -11.09709 -11.03732 -10.82621 -10.64002 -10.59694 -10.41181 -10.01531 -9.90209 -9.81275 -9.75869 -9.73702 -9.18550 -9.10476 -8.53266 -7.17479 -6.01058 -3.97561 3.28624 3.36939 3.38519 4.01032 4.10425 4.31408 4.44323 4.68214 4.71046 4.87038 5.02051 5.15275 5.23861 5.28836 5.30273 5.35250 5.44611 5.53100 5.56142 5.59671 5.72500 5.79065 5.87242 5.90802 5.95284 6.05256 6.09182 6.15678 6.19195 6.21572 6.27422 6.42876 6.45560 6.63786 6.66436 6.75580 6.84545 6.97802 7.40752 7.66532 7.92298 8.10489 8.70738 9.12541 9.61056 11.12097 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.006457 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.357150 B = 4335.565313 C = 5212.493063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.084 0.916 9 C 0.161 3.839 10 N -0.485 5.485 11 C 0.070 3.930 12 C 0.085 3.915 13 H 0.060 0.940 14 C -0.151 4.151 15 C -0.146 4.146 16 C 0.101 3.899 17 H 0.063 0.937 18 C -0.164 4.164 19 C -0.160 4.160 20 C -0.177 4.177 21 O -0.337 6.337 22 C 0.025 3.975 23 C -0.230 4.230 24 C -0.173 4.173 25 H 0.262 0.738 26 H 0.031 0.969 27 H -0.014 1.014 28 H 0.099 0.901 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.280 -12.397 -4.347 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.102 0.898 9 C 0.035 3.965 10 N -0.206 5.206 11 C -0.058 4.058 12 C 0.027 3.973 13 H 0.078 0.922 14 C -0.189 4.189 15 C -0.184 4.184 16 C 0.043 3.957 17 H 0.081 0.919 18 C -0.182 4.182 19 C -0.197 4.197 20 C -0.214 4.214 21 O -0.256 6.256 22 C -0.085 4.085 23 C -0.269 4.269 24 C -0.211 4.211 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.004 0.996 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.695 -12.474 -3.840 15.683 hybrid contribution 1.014 1.328 -0.701 1.812 sum 9.709 -11.147 -4.542 15.464 Atomic orbital electron populations 1.69894 1.06039 1.26651 1.51236 1.24884 0.94693 0.98609 0.95069 0.86934 0.80397 0.84425 0.78400 1.20401 1.21175 1.19318 1.21071 0.88662 0.94833 1.49860 0.89770 1.20277 0.97019 0.83867 0.95299 1.61770 1.10205 1.23636 1.24982 1.22042 1.03329 0.90669 0.89776 1.23200 0.92617 0.93298 0.88158 0.92197 1.23152 1.02532 0.95187 0.98040 1.22928 1.01577 0.97111 0.96763 1.22111 0.94645 0.85545 0.93418 0.91930 1.22460 0.94178 1.02579 0.99004 1.22945 0.96277 0.98438 1.02044 1.22900 1.03995 1.01676 0.92854 1.89109 1.61832 1.18376 1.56269 1.22694 0.90324 0.96579 0.98928 1.23589 1.00812 0.96992 1.05489 1.22982 1.02704 1.03260 0.92175 0.92759 0.95100 0.99597 0.88316 0.94644 0.90097 0.90813 0.91291 0.90596 0.87716 0.86536 0.89605 0.89579 0.88583 0.87764 0.89902 0.88154 0.88409 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.65 27.37 -169.99 -4.65 17.00 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.43 6.69 56.52 0.38 -6.05 16 7 C -0.51 -14.46 8.90 -34.44 -0.31 -14.77 16 8 H 0.08 2.66 7.91 -52.49 -0.41 2.24 16 9 C 0.16 3.92 2.43 -4.98 -0.01 3.91 16 10 N -0.49 -10.27 4.65 -228.08 -1.06 -11.33 16 11 C 0.07 1.32 4.55 -3.82 -0.02 1.30 16 12 C 0.09 1.34 3.26 -25.68 -0.08 1.26 16 13 H 0.06 0.89 6.41 -51.92 -0.33 0.55 16 14 C -0.15 -1.92 6.59 -24.72 -0.16 -2.08 16 15 C -0.15 -1.66 6.64 -25.20 -0.17 -1.83 16 16 C 0.10 1.39 3.78 -26.16 -0.10 1.29 16 17 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.16 -2.17 5.55 -90.62 -0.50 -2.67 16 19 C -0.16 -2.46 9.89 -26.69 -0.26 -2.72 16 20 C -0.18 -2.42 10.22 -26.69 -0.27 -2.69 16 21 O -0.34 -5.94 9.27 -35.23 -0.33 -6.27 16 22 C 0.02 0.44 5.79 -67.72 -0.39 0.05 16 23 C -0.23 -3.86 9.53 -26.69 -0.25 -4.12 16 24 C -0.17 -2.89 9.97 -26.69 -0.27 -3.16 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.03 0.77 5.33 -51.93 -0.28 0.50 16 27 H -0.01 -0.33 7.00 -51.93 -0.36 -0.70 16 28 H 0.10 2.15 7.10 -51.93 -0.37 1.78 16 29 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.80 7.60 -51.93 -0.39 0.41 16 34 H 0.10 1.17 7.99 -51.93 -0.41 0.75 16 35 H 0.12 2.22 7.07 -51.93 -0.37 1.86 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.10 1.61 6.36 -51.93 -0.33 1.28 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.10 1.91 5.92 -51.93 -0.31 1.61 16 42 H 0.10 1.82 7.70 -51.93 -0.40 1.42 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -30.69 334.71 -10.47 -41.16 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.35 Total: 5.63 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -2.90 Total: -24.33 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.29 Total: -38.23 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.33 Total: -6.27 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.65 Total: 17.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.69 -10.47 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715413291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.240 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds