Wall clock time and date at job start Mon Mar 30 2020 07:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48500 * 109.47415 * 270.00450 * 3 2 1 5 5 H 1.48507 * 109.46880 * 30.00020 * 3 2 1 6 6 H 1.48496 * 109.47099 * 150.00130 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00529 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47631 * 185.19224 * 9 7 2 11 11 C 1.46905 * 110.99792 * 70.61511 * 10 9 7 12 12 C 1.53005 * 109.47281 * 190.00352 * 11 10 9 13 13 H 1.09007 * 110.54504 * 303.57006 * 12 11 10 14 14 C 1.54991 * 110.61799 * 180.52500 * 12 11 10 15 15 C 1.54814 * 102.08979 * 204.47469 * 14 12 11 16 16 C 1.54108 * 104.18873 * 20.87673 * 15 14 12 17 17 H 1.09005 * 109.87625 * 242.60751 * 16 15 14 18 18 C 1.52994 * 110.00412 * 121.52819 * 16 15 14 19 19 C 1.53003 * 117.49873 * 249.39165 * 18 16 15 20 20 C 1.52997 * 117.49914 * 180.72929 * 18 16 15 21 21 O 1.43742 * 107.29105 * 2.03056 * 16 15 14 22 22 C 1.46903 * 111.00168 * 194.56265 * 10 9 7 23 23 C 1.52994 * 117.49731 * 353.67637 * 22 10 9 24 24 C 1.52996 * 117.49494 * 62.33983 * 22 10 9 25 25 H 0.97006 * 120.00237 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46926 * 65.19165 * 9 7 2 27 27 H 1.09006 * 109.46819 * 305.19515 * 9 7 2 28 28 H 1.09001 * 109.46977 * 309.99943 * 11 10 9 29 29 H 1.08994 * 109.47600 * 69.99838 * 11 10 9 30 30 H 1.09000 * 110.90531 * 322.66555 * 14 12 11 31 31 H 1.08990 * 110.91085 * 86.27362 * 14 12 11 32 32 H 1.09003 * 110.48565 * 262.20584 * 15 14 12 33 33 H 1.09001 * 110.60616 * 139.60960 * 15 14 12 34 34 H 1.09001 * 115.54827 * 35.05609 * 18 16 15 35 35 H 1.08997 * 117.49543 * 359.97438 * 19 18 16 36 36 H 1.08991 * 117.50087 * 145.02201 * 19 18 16 37 37 H 1.09003 * 117.49392 * 214.98016 * 20 18 16 38 38 H 1.09002 * 117.49963 * 359.97178 * 20 18 16 39 39 H 1.08997 * 115.54759 * 208.00605 * 22 10 9 40 40 H 1.09003 * 117.49995 * 214.99682 * 23 22 10 41 41 H 1.08994 * 117.50147 * 0.02562 * 23 22 10 42 42 H 1.08999 * 117.49939 * 359.96913 * 24 22 10 43 43 H 1.09005 * 117.49935 * 144.97328 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5733 -0.1269 11 6 3.7469 -3.1013 -1.4741 12 6 4.0374 -4.6034 -1.4964 13 1 5.0588 -4.8004 -1.1707 14 6 3.7900 -5.1862 -2.9111 15 6 3.5037 -6.6760 -2.6025 16 6 3.0873 -6.6812 -1.1187 17 1 3.7986 -7.2668 -0.5363 18 6 1.6836 -7.2715 -0.9711 19 6 0.5558 -6.3198 -0.5670 20 6 1.0917 -7.3426 0.4379 21 8 3.0934 -5.3161 -0.6685 22 6 5.4282 -2.6583 0.2110 23 6 6.1712 -1.3469 0.4735 24 6 5.8399 -2.2854 1.6366 25 1 -0.4851 0.8401 -0.0004 26 1 3.8752 -0.7631 0.9317 27 1 3.8745 -0.6016 -0.8410 28 1 2.7042 -2.9290 -1.7411 29 1 4.3938 -2.5955 -2.1907 30 1 2.9275 -4.7136 -3.3810 31 1 4.6772 -5.0818 -3.5354 32 1 4.4023 -7.2754 -2.7486 33 1 2.6921 -7.0482 -3.2278 34 1 1.4379 -8.0785 -1.6616 35 1 0.8141 -5.2732 -0.4060 36 1 -0.4318 -6.5008 -0.9912 37 1 0.4563 -8.1962 0.6744 38 1 1.7025 -6.9692 1.2598 39 1 5.9803 -3.4603 -0.2788 40 1 7.2124 -1.2862 0.1564 41 1 5.6012 -0.4212 0.3958 42 1 5.0519 -1.9765 2.3235 43 1 6.6627 -2.8423 2.0848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715413291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:17 Heat of formation + Delta-G solvation = -3.399665 kcal Electronic energy + Delta-G solvation = -21133.645164 eV Core-core repulsion = 18179.938637 eV Total energy + Delta-G solvation = -2953.706527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84591 -39.55319 -37.31816 -35.36656 -34.26864 -32.95103 -31.36452 -29.08834 -26.29897 -24.22962 -23.38519 -23.12675 -23.02699 -22.12399 -21.15158 -20.33289 -19.13521 -17.60104 -17.17892 -16.78339 -16.45293 -16.34004 -15.94980 -15.42962 -14.88051 -14.72794 -14.51179 -14.20692 -13.90711 -13.51747 -13.24489 -12.78034 -12.75204 -12.55756 -12.46143 -12.38193 -12.33127 -12.20939 -11.96056 -11.76569 -11.68452 -11.49184 -11.26034 -11.10560 -11.01406 -10.89147 -10.79146 -10.34459 -8.77935 -8.29333 -6.32153 1.29291 1.31758 1.42599 2.31222 2.80700 2.88963 3.02459 3.04204 3.28107 3.65848 3.76717 3.95686 3.96926 4.04980 4.09109 4.14507 4.20731 4.23111 4.35779 4.48646 4.54309 4.61698 4.66932 4.77677 4.78366 4.81265 4.83492 4.92979 4.97109 5.03089 5.07383 5.09820 5.13093 5.25432 5.28865 5.30952 5.31628 5.42423 5.54879 5.99975 6.24548 6.45649 6.68421 6.75965 7.30949 8.87847 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.006457 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.357150 B = 4335.565313 C = 5212.493063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.513 4.513 8 H 0.031 0.969 9 C 0.178 3.822 10 N -0.509 5.509 11 C 0.074 3.926 12 C 0.087 3.913 13 H 0.079 0.921 14 C -0.146 4.146 15 C -0.136 4.136 16 C 0.089 3.911 17 H 0.075 0.925 18 C -0.145 4.145 19 C -0.187 4.187 20 C -0.171 4.171 21 O -0.378 6.378 22 C 0.012 3.988 23 C -0.220 4.220 24 C -0.171 4.171 25 H 0.266 0.734 26 H 0.027 0.973 27 H -0.012 1.012 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.555 -13.555 -5.335 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.551 4.551 8 H 0.050 0.950 9 C 0.052 3.948 10 N -0.231 5.231 11 C -0.054 4.054 12 C 0.029 3.971 13 H 0.097 0.903 14 C -0.184 4.184 15 C -0.173 4.173 16 C 0.031 3.969 17 H 0.093 0.907 18 C -0.163 4.163 19 C -0.224 4.224 20 C -0.208 4.208 21 O -0.298 6.298 22 C -0.098 4.098 23 C -0.259 4.259 24 C -0.209 4.209 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.006 0.994 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.990 -13.652 -4.831 18.801 hybrid contribution -0.076 1.610 -0.351 1.650 sum 11.914 -12.042 -5.182 17.714 Atomic orbital electron populations 1.70064 1.08100 1.27976 1.52664 1.25838 0.95597 1.02976 0.94477 0.85749 0.79376 0.78793 0.79232 1.18972 1.20535 1.17593 1.21255 0.91250 0.93002 1.49631 0.95045 1.19925 0.93820 0.86228 0.94873 1.61616 1.13345 1.21465 1.26632 1.21977 1.00756 0.93638 0.89048 1.23214 0.92981 0.90786 0.90080 0.90292 1.23137 1.03138 0.95861 0.96308 1.22922 1.03313 0.96318 0.94751 1.22417 0.95158 0.83870 0.95434 0.90712 1.22681 0.93054 1.01700 0.98883 1.22745 0.98105 0.96373 1.05162 1.22936 1.03859 1.01386 0.92640 1.89102 1.62618 1.20606 1.57472 1.22879 0.88350 0.98429 1.00098 1.23579 1.02123 0.95162 1.04991 1.23050 1.02904 1.03525 0.91452 0.92485 0.95520 0.99396 0.93043 0.93124 0.91932 0.87839 0.88219 0.89550 0.84512 0.91642 0.88431 0.86860 0.90455 0.84781 0.86347 0.90669 0.91221 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 2 C 0.01 0.50 5.47 84.65 0.46 0.96 16 3 Si 0.95 45.55 27.37 68.60 1.88 47.43 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.25 -11.40 6.69 99.48 0.67 -10.73 16 7 C -0.51 -31.25 8.90 25.60 0.23 -31.02 16 8 H 0.03 2.18 7.91 -2.91 -0.02 2.16 16 9 C 0.18 8.94 2.43 85.56 0.21 9.15 16 10 N -0.51 -22.10 4.65 -875.53 -4.08 -26.17 16 11 C 0.07 2.88 4.55 86.30 0.39 3.27 16 12 C 0.09 2.69 3.26 31.28 0.10 2.79 16 13 H 0.08 2.13 6.41 -2.38 -0.02 2.11 16 14 C -0.15 -3.46 6.59 31.89 0.21 -3.25 16 15 C -0.14 -2.67 6.64 31.59 0.21 -2.46 16 16 C 0.09 2.32 3.78 30.97 0.12 2.44 16 17 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 18 C -0.15 -3.68 5.55 -10.80 -0.06 -3.74 16 19 C -0.19 -6.08 9.89 30.62 0.30 -5.78 16 20 C -0.17 -4.68 10.22 30.62 0.31 -4.37 16 21 O -0.38 -13.72 9.27 -148.98 -1.38 -15.10 16 22 C 0.01 0.39 5.79 44.91 0.26 0.65 16 23 C -0.22 -6.82 9.53 30.62 0.29 -6.52 16 24 C -0.17 -5.40 9.97 30.62 0.31 -5.10 16 25 H 0.27 16.00 8.31 -92.70 -0.77 15.23 16 26 H 0.03 1.36 5.33 -2.38 -0.01 1.35 16 27 H -0.01 -0.57 7.00 -2.38 -0.02 -0.59 16 28 H 0.05 2.45 7.10 -2.39 -0.02 2.44 16 29 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 30 H 0.06 1.70 8.06 -2.39 -0.02 1.68 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.55 7.60 -2.39 -0.02 1.53 16 34 H 0.14 2.61 7.99 -2.39 -0.02 2.59 16 35 H 0.06 2.82 7.07 -2.39 -0.02 2.80 16 36 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.13 3.68 6.36 -2.39 -0.02 3.67 16 40 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.07 2.74 5.92 -2.39 -0.01 2.73 16 42 H 0.07 2.59 7.70 -2.39 -0.02 2.57 16 43 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 Total: -1.00 -73.05 334.71 0.99 -72.05 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.93 Total: 25.77 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 3.34 Total: -42.99 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.78 Total: -87.16 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -1.38 Total: -15.10 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -73.05 0.99 -72.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715413291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.655 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds