Wall clock time and date at job start Mon Mar 30 2020 07:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00381 * 2 1 4 4 H 1.48507 * 109.46871 * 270.00196 * 3 2 1 5 5 H 1.48497 * 109.47338 * 29.99511 * 3 2 1 6 6 H 1.48500 * 109.47721 * 150.00072 * 3 2 1 7 7 C 1.37881 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99815 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00337 * 180.02562 * 7 2 1 10 10 H 1.09005 * 110.63162 * 56.89380 * 9 7 2 11 11 C 1.55143 * 110.85496 * 293.68399 * 9 7 2 12 12 C 1.54900 * 101.65437 * 205.89125 * 11 9 7 13 13 N 1.47843 * 104.79749 * 37.07586 * 12 11 9 14 14 C 1.46903 * 111.00172 * 213.63514 * 13 12 11 15 15 C 1.52995 * 109.46938 * 290.83812 * 14 13 12 16 16 H 1.08996 * 110.33339 * 57.75035 * 15 14 13 17 17 C 1.54482 * 110.36907 * 179.97438 * 15 14 13 18 18 C 1.54516 * 104.06054 * 142.92413 * 17 15 14 19 19 C 1.54475 * 104.06323 * 359.97438 * 18 17 15 20 20 H 1.08995 * 110.37669 * 94.96701 * 19 18 17 21 21 C 1.53006 * 110.37299 * 217.19405 * 19 18 17 22 22 C 1.53000 * 117.49776 * 179.97438 * 21 19 18 23 23 C 1.52997 * 117.49537 * 248.62427 * 21 19 18 24 24 O 1.44424 * 110.46560 * 295.43353 * 15 14 13 25 25 C 1.47448 * 108.56306 * 335.90131 * 13 12 11 26 26 H 0.96997 * 119.99842 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.99176 * 323.99005 * 11 9 7 28 28 H 1.09005 * 110.98651 * 87.76402 * 11 9 7 29 29 H 1.08993 * 110.37949 * 278.24441 * 12 11 9 30 30 H 1.09003 * 110.37559 * 155.90300 * 12 11 9 31 31 H 1.09004 * 109.46885 * 170.83919 * 14 13 12 32 32 H 1.08994 * 109.46952 * 50.84146 * 14 13 12 33 33 H 1.08995 * 110.51200 * 24.27873 * 17 15 14 34 34 H 1.09002 * 110.62986 * 261.61808 * 17 15 14 35 35 H 1.09005 * 110.50783 * 241.35349 * 18 17 15 36 36 H 1.08995 * 110.51310 * 118.64529 * 18 17 15 37 37 H 1.09002 * 115.56020 * 34.30555 * 21 19 18 38 38 H 1.08990 * 117.49990 * 359.97438 * 22 21 19 39 39 H 1.09004 * 117.49237 * 214.97568 * 22 21 19 40 40 H 1.08999 * 117.49685 * 145.02116 * 23 21 19 41 41 H 1.08997 * 117.50044 * 359.97438 * 23 21 19 42 42 H 1.09000 * 109.88776 * 120.39881 * 25 13 12 43 43 H 1.09004 * 109.88581 * 241.41922 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.8952 -0.6368 0.8557 11 6 4.0643 -0.6121 -1.3265 12 6 5.4511 -1.2965 -1.4147 13 7 5.2333 -2.6604 -0.8873 14 6 6.4226 -3.1453 -0.1743 15 6 7.5524 -3.3920 -1.1760 16 1 7.7760 -2.4786 -1.7271 17 6 8.8152 -3.9026 -0.4472 18 6 9.4192 -4.9372 -1.4230 19 6 8.4496 -4.9298 -2.6255 20 1 8.8111 -4.2539 -3.4004 21 6 8.2867 -6.3437 -3.1872 22 6 7.3559 -6.5239 -4.3880 23 6 8.8719 -6.6252 -4.5725 24 8 7.1965 -4.4546 -2.0870 25 6 4.0570 -2.6377 0.0016 26 1 -0.4850 0.8400 0.0004 27 1 3.4344 -0.8959 -2.1696 28 1 4.1662 0.4714 -1.2652 29 1 6.1771 -0.7637 -0.8007 30 1 5.7878 -1.3396 -2.4505 31 1 6.1835 -4.0761 0.3401 32 1 6.7392 -2.3987 0.5539 33 1 8.5459 -4.3786 0.4956 34 1 9.5160 -3.0856 -0.2751 35 1 9.4485 -5.9248 -0.9625 36 1 10.4175 -4.6306 -1.7351 37 1 8.3221 -7.1484 -2.4528 38 1 6.8593 -5.6354 -4.7777 39 1 6.7794 -7.4473 -4.4437 40 1 9.2922 -7.6152 -4.7495 41 1 9.3726 -5.8031 -5.0839 42 1 3.2958 -3.3219 -0.3731 43 1 4.3497 -2.9258 1.0113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715415485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:46 Heat of formation + Delta-G solvation = -18.894726 kcal Electronic energy + Delta-G solvation = -20556.714552 eV Core-core repulsion = 17602.336109 eV Total energy + Delta-G solvation = -2954.378443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83704 -38.16247 -36.70872 -33.26170 -32.11154 -31.49106 -29.05998 -28.45137 -25.61637 -23.72859 -22.55623 -22.29413 -21.21178 -20.53802 -20.00349 -19.41053 -16.89957 -16.61861 -16.15544 -15.64021 -15.10751 -14.76347 -14.48627 -13.92098 -13.66860 -13.33694 -13.31706 -12.70218 -12.50592 -12.20183 -11.90275 -11.79281 -11.67890 -11.52976 -11.39115 -11.12303 -10.99570 -10.71097 -10.62402 -10.50066 -10.29505 -10.16621 -10.01520 -9.80530 -9.59785 -9.42764 -9.03311 -8.53092 -7.64755 -6.05295 -4.03832 3.29053 3.37231 3.38593 3.42093 4.08327 4.31159 4.43137 4.45513 4.56965 4.74285 4.85397 4.88916 4.98304 5.17483 5.22026 5.26686 5.35949 5.45846 5.48227 5.50954 5.64281 5.66706 5.74463 5.78394 5.81735 5.90844 5.92630 5.98221 6.00421 6.10734 6.14633 6.18812 6.29483 6.64431 6.80461 6.86343 7.01584 7.11401 7.34733 7.67972 7.74383 7.79758 8.54923 8.98908 9.57207 11.08008 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.004021 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.762114 B = 6961.331314 C = 7284.890585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.076 0.924 9 C -0.003 4.003 10 H 0.030 0.970 11 C -0.133 4.133 12 C 0.042 3.958 13 N -0.522 5.522 14 C 0.058 3.942 15 C 0.083 3.917 16 H 0.065 0.935 17 C -0.153 4.153 18 C -0.145 4.145 19 C 0.099 3.901 20 H 0.064 0.936 21 C -0.148 4.148 22 C -0.165 4.165 23 C -0.178 4.178 24 O -0.339 6.339 25 C 0.059 3.941 26 H 0.263 0.737 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.039 -9.321 -4.573 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.094 0.906 9 C -0.023 4.023 10 H 0.048 0.952 11 C -0.171 4.171 12 C -0.086 4.086 13 N -0.246 5.246 14 C -0.071 4.071 15 C 0.024 3.976 16 H 0.082 0.918 17 C -0.191 4.191 18 C -0.183 4.183 19 C 0.041 3.959 20 H 0.082 0.918 21 C -0.166 4.166 22 C -0.202 4.202 23 C -0.215 4.215 24 O -0.258 6.258 25 C -0.068 4.068 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.559 -9.639 -5.022 23.255 hybrid contribution 0.804 1.621 0.735 1.953 sum 21.363 -8.018 -4.287 23.217 Atomic orbital electron populations 1.69900 1.06245 1.26860 1.50981 1.24987 0.94646 0.98944 0.94495 0.86893 0.80003 0.83827 0.78398 1.20262 1.22016 1.19236 1.20961 0.88261 0.94546 1.50533 0.90615 1.20343 0.97308 0.91872 0.92746 0.95204 1.23088 0.94414 0.97846 1.01799 1.23055 0.97966 0.88532 0.99011 1.63586 1.03031 1.23009 1.34995 1.22324 0.90716 1.00224 0.93792 1.22967 0.93165 0.90976 0.90449 0.91759 1.22999 0.97391 0.99019 0.99694 1.22933 0.99140 1.00135 0.96065 1.22458 0.85279 0.93092 0.95049 0.91847 1.22224 1.06224 0.96814 0.91375 1.22863 0.92254 1.03648 1.01418 1.22991 0.97067 1.02789 0.98670 1.89345 1.25741 1.50994 1.59683 1.22826 0.91249 0.99516 0.93181 0.92699 0.90568 0.93208 0.95008 0.91578 0.90455 0.93918 0.90533 0.90783 0.90648 0.90880 0.87515 0.88240 0.88744 0.88685 0.88859 0.90448 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.88 21.91 24.80 -169.99 -4.22 17.69 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.27 -6.38 6.46 56.52 0.36 -6.02 16 7 C -0.50 -14.32 9.06 -34.44 -0.31 -14.63 16 8 H 0.08 2.32 7.78 -52.48 -0.41 1.91 16 9 C 0.00 -0.07 2.32 -89.95 -0.21 -0.28 16 10 H 0.03 0.73 7.03 -51.93 -0.37 0.36 16 11 C -0.13 -2.92 5.45 -24.60 -0.13 -3.05 16 12 C 0.04 0.78 5.78 -2.30 -0.01 0.76 16 13 N -0.52 -9.85 5.13 -231.26 -1.19 -11.04 16 14 C 0.06 0.89 4.18 -3.83 -0.02 0.88 16 15 C 0.08 1.11 3.26 -25.96 -0.08 1.02 16 16 H 0.06 0.87 7.48 -51.93 -0.39 0.48 16 17 C -0.15 -1.55 6.63 -25.16 -0.17 -1.72 16 18 C -0.14 -1.35 6.63 -25.16 -0.17 -1.51 16 19 C 0.10 1.12 3.45 -25.95 -0.09 1.03 16 20 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 21 C -0.15 -1.51 5.42 -90.62 -0.49 -2.01 16 22 C -0.16 -1.70 10.24 -26.70 -0.27 -1.98 16 23 C -0.18 -1.50 10.19 -26.70 -0.27 -1.77 16 24 O -0.34 -5.08 10.99 -35.23 -0.39 -5.46 16 25 C 0.06 1.25 6.45 -2.83 -0.02 1.23 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.08 1.76 8.05 -51.93 -0.42 1.34 16 28 H 0.05 1.08 5.59 -51.93 -0.29 0.79 16 29 H 0.03 0.54 7.62 -51.93 -0.40 0.15 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 32 H 0.04 0.62 7.85 -51.93 -0.41 0.21 16 33 H 0.08 0.75 7.87 -51.93 -0.41 0.35 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 1.04 7.87 -51.93 -0.41 0.63 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.08 1.75 7.63 -51.93 -0.40 1.35 16 43 H 0.04 0.72 7.55 -51.93 -0.39 0.33 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -30.83 331.33 -10.00 -40.84 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.64 Total: 0.09 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.34 Total: -20.07 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.41 Total: -38.08 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.39 Total: -5.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.22 Total: 17.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.83 -10.00 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715415485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.940 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds