Wall clock time and date at job start Mon Mar 30 2020 07:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00381 * 2 1 4 4 H 1.48507 * 109.46871 * 270.00196 * 3 2 1 5 5 H 1.48497 * 109.47338 * 29.99511 * 3 2 1 6 6 H 1.48500 * 109.47721 * 150.00072 * 3 2 1 7 7 C 1.37881 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99815 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00337 * 180.02562 * 7 2 1 10 10 H 1.09005 * 110.63162 * 56.89380 * 9 7 2 11 11 C 1.55143 * 110.85496 * 293.68399 * 9 7 2 12 12 C 1.54900 * 101.65437 * 205.89125 * 11 9 7 13 13 N 1.47843 * 104.79749 * 37.07586 * 12 11 9 14 14 C 1.46903 * 111.00172 * 213.63514 * 13 12 11 15 15 C 1.52995 * 109.46938 * 290.83812 * 14 13 12 16 16 H 1.08996 * 110.33339 * 57.75035 * 15 14 13 17 17 C 1.54482 * 110.36907 * 179.97438 * 15 14 13 18 18 C 1.54516 * 104.06054 * 142.92413 * 17 15 14 19 19 C 1.54475 * 104.06323 * 359.97438 * 18 17 15 20 20 H 1.08995 * 110.37669 * 94.96701 * 19 18 17 21 21 C 1.53006 * 110.37299 * 217.19405 * 19 18 17 22 22 C 1.53000 * 117.49776 * 179.97438 * 21 19 18 23 23 C 1.52997 * 117.49537 * 248.62427 * 21 19 18 24 24 O 1.44424 * 110.46560 * 295.43353 * 15 14 13 25 25 C 1.47448 * 108.56306 * 335.90131 * 13 12 11 26 26 H 0.96997 * 119.99842 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.99176 * 323.99005 * 11 9 7 28 28 H 1.09005 * 110.98651 * 87.76402 * 11 9 7 29 29 H 1.08993 * 110.37949 * 278.24441 * 12 11 9 30 30 H 1.09003 * 110.37559 * 155.90300 * 12 11 9 31 31 H 1.09004 * 109.46885 * 170.83919 * 14 13 12 32 32 H 1.08994 * 109.46952 * 50.84146 * 14 13 12 33 33 H 1.08995 * 110.51200 * 24.27873 * 17 15 14 34 34 H 1.09002 * 110.62986 * 261.61808 * 17 15 14 35 35 H 1.09005 * 110.50783 * 241.35349 * 18 17 15 36 36 H 1.08995 * 110.51310 * 118.64529 * 18 17 15 37 37 H 1.09002 * 115.56020 * 34.30555 * 21 19 18 38 38 H 1.08990 * 117.49990 * 359.97438 * 22 21 19 39 39 H 1.09004 * 117.49237 * 214.97568 * 22 21 19 40 40 H 1.08999 * 117.49685 * 145.02116 * 23 21 19 41 41 H 1.08997 * 117.50044 * 359.97438 * 23 21 19 42 42 H 1.09000 * 109.88776 * 120.39881 * 25 13 12 43 43 H 1.09004 * 109.88581 * 241.41922 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.8952 -0.6368 0.8557 11 6 4.0643 -0.6121 -1.3265 12 6 5.4511 -1.2965 -1.4147 13 7 5.2333 -2.6604 -0.8873 14 6 6.4226 -3.1453 -0.1743 15 6 7.5524 -3.3920 -1.1760 16 1 7.7760 -2.4786 -1.7271 17 6 8.8152 -3.9026 -0.4472 18 6 9.4192 -4.9372 -1.4230 19 6 8.4496 -4.9298 -2.6255 20 1 8.8111 -4.2539 -3.4004 21 6 8.2867 -6.3437 -3.1872 22 6 7.3559 -6.5239 -4.3880 23 6 8.8719 -6.6252 -4.5725 24 8 7.1965 -4.4546 -2.0870 25 6 4.0570 -2.6377 0.0016 26 1 -0.4850 0.8400 0.0004 27 1 3.4344 -0.8959 -2.1696 28 1 4.1662 0.4714 -1.2652 29 1 6.1771 -0.7637 -0.8007 30 1 5.7878 -1.3396 -2.4505 31 1 6.1835 -4.0761 0.3401 32 1 6.7392 -2.3987 0.5539 33 1 8.5459 -4.3786 0.4956 34 1 9.5160 -3.0856 -0.2751 35 1 9.4485 -5.9248 -0.9625 36 1 10.4175 -4.6306 -1.7351 37 1 8.3221 -7.1484 -2.4528 38 1 6.8593 -5.6354 -4.7777 39 1 6.7794 -7.4473 -4.4437 40 1 9.2922 -7.6152 -4.7495 41 1 9.3726 -5.8031 -5.0839 42 1 3.2958 -3.3219 -0.3731 43 1 4.3497 -2.9258 1.0113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715415485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:45 Heat of formation + Delta-G solvation = -38.998049 kcal Electronic energy + Delta-G solvation = -20557.586298 eV Core-core repulsion = 17602.336109 eV Total energy + Delta-G solvation = -2955.250189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81938 -39.62832 -37.56517 -35.15556 -33.39449 -32.81756 -30.37579 -30.10020 -27.00342 -25.41196 -23.40475 -23.24944 -22.22187 -21.52817 -21.24552 -21.20571 -19.01356 -17.50342 -17.20661 -16.89533 -16.59072 -15.99228 -15.64419 -15.38482 -14.95305 -14.61193 -14.52825 -14.34587 -14.18401 -13.52052 -13.25920 -13.00854 -12.74133 -12.61680 -12.56032 -12.39118 -12.30748 -12.12774 -11.94067 -11.73577 -11.62187 -11.48620 -11.32700 -11.17570 -11.11584 -10.92174 -10.73533 -10.56097 -9.12067 -8.30287 -6.34456 1.31823 1.34416 1.44971 2.33150 2.60948 3.03185 3.05747 3.31522 3.58995 3.70029 3.89961 3.98442 4.01471 4.11239 4.16002 4.16544 4.24442 4.30692 4.41512 4.46832 4.50394 4.65726 4.70214 4.72119 4.75449 4.80493 4.83230 4.96198 4.97623 5.02032 5.05368 5.17373 5.18412 5.23320 5.26867 5.31806 5.32288 5.47819 5.70093 6.06409 6.11615 6.27350 6.36629 6.71188 7.30328 8.86816 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.004021 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.762114 B = 6961.331314 C = 7284.890585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.514 4.514 8 H 0.031 0.969 9 C -0.006 4.006 10 H 0.034 0.966 11 C -0.132 4.132 12 C 0.053 3.947 13 N -0.535 5.535 14 C 0.057 3.943 15 C 0.081 3.919 16 H 0.065 0.935 17 C -0.146 4.146 18 C -0.138 4.138 19 C 0.093 3.907 20 H 0.065 0.935 21 C -0.158 4.158 22 C -0.186 4.186 23 C -0.154 4.154 24 O -0.374 6.374 25 C 0.068 3.932 26 H 0.266 0.734 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.048 0.952 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.943 -8.668 -4.582 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.552 4.552 8 H 0.049 0.951 9 C -0.026 4.026 10 H 0.052 0.948 11 C -0.171 4.171 12 C -0.074 4.074 13 N -0.259 5.259 14 C -0.071 4.071 15 C 0.023 3.977 16 H 0.083 0.917 17 C -0.185 4.185 18 C -0.176 4.176 19 C 0.035 3.965 20 H 0.083 0.917 21 C -0.176 4.176 22 C -0.223 4.223 23 C -0.191 4.191 24 O -0.294 6.294 25 C -0.059 4.059 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.496 -9.007 -5.036 26.581 hybrid contribution -0.487 1.295 0.716 1.558 sum 24.010 -7.712 -4.320 25.585 Atomic orbital electron populations 1.70058 1.08303 1.28080 1.52734 1.25908 0.95449 1.03155 0.94055 0.85822 0.79360 0.78457 0.79261 1.18891 1.21878 1.16810 1.21230 0.90966 0.92971 1.50037 0.95115 1.20289 0.94207 0.94066 0.94042 0.94768 1.22963 0.96170 0.98501 0.99441 1.23001 0.96104 0.87936 1.00402 1.63523 1.03725 1.23527 1.35150 1.22434 0.89872 1.00275 0.94549 1.22991 0.93518 0.91001 0.90193 0.91709 1.22980 0.96143 0.99832 0.99499 1.22922 0.99484 1.00311 0.94845 1.22645 0.84544 0.93390 0.95903 0.91704 1.22303 1.06743 0.96587 0.91995 1.22859 0.93779 1.03065 1.02570 1.23070 0.95189 1.04036 0.96790 1.89315 1.28164 1.51577 1.60341 1.22568 0.91857 0.97163 0.94338 0.92513 0.92786 0.92422 0.92567 0.90219 0.90766 0.92386 0.90279 0.88759 0.90127 0.88749 0.87199 0.90094 0.88477 0.86845 0.88060 0.93340 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 2 C 0.01 0.66 5.46 84.66 0.46 1.13 16 3 Si 0.95 44.78 24.80 68.60 1.70 46.48 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.24 -10.59 6.46 99.48 0.64 -9.95 16 7 C -0.51 -30.18 9.06 25.60 0.23 -29.95 16 8 H 0.03 2.01 7.78 -2.91 -0.02 1.99 16 9 C -0.01 -0.30 2.32 -10.36 -0.02 -0.33 16 10 H 0.03 1.60 7.03 -2.38 -0.02 1.59 16 11 C -0.13 -5.63 5.45 31.98 0.17 -5.45 16 12 C 0.05 1.82 5.78 86.77 0.50 2.32 16 13 N -0.54 -19.52 5.13 -885.56 -4.54 -24.06 16 14 C 0.06 1.62 4.18 86.30 0.36 1.98 16 15 C 0.08 1.97 3.26 31.10 0.10 2.07 16 16 H 0.07 1.55 7.48 -2.39 -0.02 1.53 16 17 C -0.15 -2.47 6.63 31.61 0.21 -2.26 16 18 C -0.14 -2.11 6.63 31.61 0.21 -1.90 16 19 C 0.09 1.91 3.45 31.10 0.11 2.01 16 20 H 0.07 1.28 7.97 -2.39 -0.02 1.27 16 21 C -0.16 -2.99 5.42 -10.79 -0.06 -3.05 16 22 C -0.19 -3.74 10.24 30.61 0.31 -3.43 16 23 C -0.15 -2.26 10.19 30.61 0.31 -1.94 16 24 O -0.37 -10.76 10.99 -148.98 -1.64 -12.39 16 25 C 0.07 2.89 6.45 86.64 0.56 3.45 16 26 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 27 H 0.05 2.50 8.05 -2.39 -0.02 2.48 16 28 H 0.06 2.34 5.59 -2.38 -0.01 2.32 16 29 H 0.06 1.68 7.62 -2.39 -0.02 1.67 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.07 2.14 8.03 -2.39 -0.02 2.12 16 32 H 0.06 1.49 7.85 -2.39 -0.02 1.47 16 33 H 0.08 1.30 7.87 -2.39 -0.02 1.29 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.16 7.69 -2.38 -0.02 1.14 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.11 1.97 7.87 -2.39 -0.02 1.95 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.33 8.09 -2.39 -0.02 1.31 16 42 H 0.05 2.30 7.63 -2.39 -0.02 2.28 16 43 H 0.05 2.00 7.55 -2.39 -0.02 1.98 16 Total: -1.00 -68.84 331.33 0.18 -68.66 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.89 Total: 17.05 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.46 Total: -35.36 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -4.24 Total: -84.43 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.64 Total: -12.39 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.70 Total: 46.48 kcal Total: -68.84 0.18 -68.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715415485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.664 kcal (2) G-P(sol) polarization free energy of solvation -68.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds