Wall clock time and date at job start Mon Mar 30 2020 07:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.27424 * 57.91280 * 9 7 2 11 11 C 1.54595 * 110.30933 * 295.71298 * 9 7 2 12 12 C 1.54936 * 102.92047 * 219.12858 * 11 9 7 13 13 N 1.48534 * 103.22746 * 37.41512 * 12 11 9 14 14 C 1.46909 * 110.99806 * 200.27594 * 13 12 11 15 15 C 1.52995 * 109.47250 * 307.40069 * 14 13 12 16 16 H 1.09000 * 110.33017 * 305.69615 * 15 14 13 17 17 C 1.54479 * 110.36799 * 183.45399 * 15 14 13 18 18 C 1.54516 * 104.05818 * 217.18663 * 17 15 14 19 19 C 1.54480 * 104.06351 * 359.97438 * 18 17 15 20 20 H 1.08996 * 110.37555 * 265.03773 * 19 18 17 21 21 C 1.53004 * 110.36836 * 142.80858 * 19 18 17 22 22 C 1.53002 * 117.49678 * 248.62246 * 21 19 18 23 23 C 1.52998 * 117.49567 * 180.02562 * 21 19 18 24 24 O 1.44419 * 110.37464 * 67.95336 * 15 14 13 25 25 C 1.47896 * 105.82107 * 320.79243 * 13 12 11 26 26 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 27 27 H 1.08994 * 110.72558 * 337.48688 * 11 9 7 28 28 H 1.09008 * 110.71866 * 100.77551 * 11 9 7 29 29 H 1.09008 * 110.66994 * 278.97943 * 12 11 9 30 30 H 1.08995 * 110.66889 * 155.85292 * 12 11 9 31 31 H 1.08995 * 109.46894 * 67.40184 * 14 13 12 32 32 H 1.09001 * 109.46322 * 187.39405 * 14 13 12 33 33 H 1.08997 * 110.51544 * 335.83003 * 17 15 14 34 34 H 1.09000 * 110.51191 * 98.54641 * 17 15 14 35 35 H 1.09004 * 110.51049 * 118.64446 * 18 17 15 36 36 H 1.08999 * 110.50816 * 241.21637 * 18 17 15 37 37 H 1.08990 * 115.55125 * 34.33184 * 21 19 18 38 38 H 1.09002 * 117.49914 * 0.02562 * 22 21 19 39 39 H 1.08997 * 117.49693 * 145.02449 * 22 21 19 40 40 H 1.09002 * 117.49824 * 214.98305 * 23 21 19 41 41 H 1.09002 * 117.49947 * 359.97392 * 23 21 19 42 42 H 1.09006 * 109.91896 * 265.97442 * 25 13 12 43 43 H 1.08996 * 110.07905 * 144.77530 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 1 3.8895 -0.6511 0.8651 11 6 4.0476 -0.5647 -1.3075 12 6 5.2663 -1.4587 -1.6480 13 7 4.8123 -2.8169 -1.2539 14 6 5.9563 -3.7152 -1.0476 15 6 6.8607 -3.6808 -2.2812 16 1 6.2853 -3.9066 -3.1790 17 6 8.0250 -4.6836 -2.1224 18 6 9.2302 -3.9648 -2.7692 19 6 8.6512 -2.6132 -3.2428 20 1 8.3536 -2.6738 -4.2896 21 6 9.6776 -1.4958 -3.0456 22 6 9.3766 -0.4401 -1.9798 23 6 9.2706 -0.0811 -3.4629 24 8 7.4963 -2.3898 -2.4028 25 6 4.0460 -2.6383 -0.0016 26 1 -0.4850 0.8401 0.0004 27 1 3.2980 -0.6175 -2.0970 28 1 4.3602 0.4659 -1.1390 29 1 6.1375 -1.1600 -1.0648 30 1 5.4851 -1.4207 -2.7151 31 1 6.5209 -3.3897 -0.1740 32 1 5.5960 -4.7317 -0.8893 33 1 8.2186 -4.8802 -1.0679 34 1 7.8050 -5.6112 -2.6508 35 1 10.0196 -3.8061 -2.0344 36 1 9.6075 -4.5384 -3.6158 37 1 10.7190 -1.7832 -3.1898 38 1 8.4476 -0.5420 -1.4188 39 1 10.2201 -0.0330 -1.4224 40 1 10.0444 0.5623 -3.8816 41 1 8.2718 0.0534 -3.8782 42 1 4.6980 -2.7933 0.8581 43 1 3.2143 -3.3421 0.0318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715415486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:50 Heat of formation + Delta-G solvation = -16.270819 kcal Electronic energy + Delta-G solvation = -21160.614707 eV Core-core repulsion = 18206.350045 eV Total energy + Delta-G solvation = -2954.264662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00602 -38.01713 -36.50278 -33.23379 -32.24877 -31.46876 -29.04408 -28.28118 -25.67499 -23.76115 -22.49914 -22.10614 -21.28205 -20.49794 -19.96237 -19.20563 -16.89156 -16.60722 -16.02649 -15.55356 -15.17709 -14.91801 -14.39555 -14.02469 -13.60613 -13.41679 -13.13676 -12.70533 -12.34628 -12.18091 -11.81440 -11.71398 -11.57625 -11.44372 -11.39236 -11.05073 -10.99091 -10.63343 -10.60777 -10.32063 -10.21393 -10.17654 -9.89288 -9.79098 -9.56933 -9.36003 -8.91220 -8.48301 -7.73498 -5.99797 -3.97144 3.34907 3.42525 3.44727 3.65049 3.82801 4.36675 4.44737 4.49045 4.63154 4.77526 4.90978 4.91464 5.02639 5.23768 5.25385 5.31150 5.36374 5.50712 5.52006 5.62493 5.64823 5.72731 5.77106 5.83490 5.91083 5.94826 6.06396 6.09139 6.11896 6.17470 6.18017 6.30069 6.53926 6.69992 6.83828 6.93826 7.01548 7.21363 7.28199 7.73537 7.76901 7.87186 8.60919 9.04417 9.63200 11.13601 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025276 B = 0.005339 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.486952 B = 5243.338073 C = 6104.552241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.075 0.925 9 C 0.005 3.995 10 H 0.029 0.971 11 C -0.132 4.132 12 C 0.053 3.947 13 N -0.516 5.516 14 C 0.053 3.947 15 C 0.078 3.922 16 H 0.076 0.924 17 C -0.149 4.149 18 C -0.145 4.145 19 C 0.099 3.901 20 H 0.069 0.931 21 C -0.157 4.157 22 C -0.164 4.164 23 C -0.176 4.176 24 O -0.353 6.353 25 C 0.055 3.945 26 H 0.262 0.738 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.022 0.978 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.045 -6.169 -6.205 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.539 4.539 8 H 0.093 0.907 9 C -0.015 4.015 10 H 0.047 0.953 11 C -0.171 4.171 12 C -0.075 4.075 13 N -0.241 5.241 14 C -0.075 4.075 15 C 0.020 3.980 16 H 0.094 0.906 17 C -0.187 4.187 18 C -0.183 4.183 19 C 0.041 3.959 20 H 0.087 0.913 21 C -0.175 4.175 22 C -0.201 4.201 23 C -0.213 4.213 24 O -0.273 6.273 25 C -0.072 4.072 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.040 0.960 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.485 -6.100 -6.502 22.341 hybrid contribution 1.044 1.069 0.508 1.578 sum 21.529 -5.031 -5.994 22.907 Atomic orbital electron populations 1.69908 1.06240 1.26755 1.51379 1.24980 0.94625 0.98912 0.94618 0.86913 0.80022 0.83852 0.78472 1.20269 1.22101 1.19162 1.21068 0.88349 0.94408 1.50123 0.90726 1.19989 0.97276 0.91112 0.93100 0.95293 1.22985 0.96523 0.96639 1.00925 1.23129 0.95991 0.88260 1.00103 1.64834 1.18733 1.09970 1.30525 1.22355 0.91442 0.98768 0.94972 1.23006 0.93037 0.82815 0.99100 0.90618 1.22942 0.94808 0.98988 1.01970 1.22905 0.98495 0.95970 1.00882 1.22409 0.86032 0.92725 0.94685 0.91278 1.22307 0.98501 0.89979 1.06705 1.22876 1.03808 1.01502 0.91937 1.22933 1.02899 0.97009 0.98465 1.89345 1.39388 1.28692 1.69861 1.22903 0.96280 0.99969 0.88056 0.92803 0.90743 0.93688 0.94251 0.91030 0.94524 0.89996 0.90701 0.90582 0.90753 0.90861 0.87255 0.87440 0.89412 0.89159 0.88470 0.95969 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 2 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.88 22.33 24.86 -169.99 -4.23 18.10 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.27 -6.53 6.41 56.52 0.36 -6.17 16 7 C -0.50 -14.39 8.96 -34.44 -0.31 -14.70 16 8 H 0.07 2.31 7.59 -52.48 -0.40 1.91 16 9 C 0.00 0.11 2.43 -90.42 -0.22 -0.11 16 10 H 0.03 0.72 7.09 -51.93 -0.37 0.36 16 11 C -0.13 -2.99 4.94 -24.87 -0.12 -3.12 16 12 C 0.05 1.01 4.71 -1.90 -0.01 1.00 16 13 N -0.52 -9.80 5.40 -230.45 -1.24 -11.04 16 14 C 0.05 0.80 4.78 -3.82 -0.02 0.78 16 15 C 0.08 1.00 3.14 -25.96 -0.08 0.92 16 16 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.15 -1.45 6.63 -25.16 -0.17 -1.62 16 18 C -0.14 -1.29 6.62 -25.16 -0.17 -1.46 16 19 C 0.10 1.07 3.64 -25.95 -0.09 0.98 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.16 -1.57 5.60 -90.62 -0.51 -2.08 16 22 C -0.16 -1.85 9.89 -26.75 -0.26 -2.11 16 23 C -0.18 -1.84 10.24 -26.76 -0.27 -2.12 16 24 O -0.35 -4.83 6.11 -35.23 -0.22 -5.05 16 25 C 0.06 1.16 6.35 -2.76 -0.02 1.15 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.07 1.81 7.86 -51.93 -0.41 1.40 16 28 H 0.04 1.00 6.18 -51.92 -0.32 0.68 16 29 H 0.04 0.75 7.22 -51.92 -0.37 0.37 16 30 H 0.07 1.33 7.19 -51.93 -0.37 0.96 16 31 H 0.04 0.56 7.81 -51.93 -0.41 0.16 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.91 8.13 -51.93 -0.42 0.49 16 38 H 0.11 1.47 7.06 -51.93 -0.37 1.10 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 43 H 0.08 1.70 7.39 -51.93 -0.38 1.32 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -30.68 324.61 -9.96 -40.64 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.59 Total: 0.40 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.35 Total: -20.53 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.47 Total: -38.46 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.22 Total: -5.05 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.23 Total: 18.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.68 -9.96 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715415486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.366 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds