Wall clock time and date at job start Mon Mar 30 2020 07:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99675 * 359.72032 * 7 2 1 9 9 C 1.50695 * 119.99721 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.27424 * 57.91280 * 9 7 2 11 11 C 1.54595 * 110.30933 * 295.71298 * 9 7 2 12 12 C 1.54936 * 102.92047 * 219.12858 * 11 9 7 13 13 N 1.48534 * 103.22746 * 37.41512 * 12 11 9 14 14 C 1.46909 * 110.99806 * 200.27594 * 13 12 11 15 15 C 1.52995 * 109.47250 * 307.40069 * 14 13 12 16 16 H 1.09000 * 110.33017 * 305.69615 * 15 14 13 17 17 C 1.54479 * 110.36799 * 183.45399 * 15 14 13 18 18 C 1.54516 * 104.05818 * 217.18663 * 17 15 14 19 19 C 1.54480 * 104.06351 * 359.97438 * 18 17 15 20 20 H 1.08996 * 110.37555 * 265.03773 * 19 18 17 21 21 C 1.53004 * 110.36836 * 142.80858 * 19 18 17 22 22 C 1.53002 * 117.49678 * 248.62246 * 21 19 18 23 23 C 1.52998 * 117.49567 * 180.02562 * 21 19 18 24 24 O 1.44419 * 110.37464 * 67.95336 * 15 14 13 25 25 C 1.47896 * 105.82107 * 320.79243 * 13 12 11 26 26 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 27 27 H 1.08994 * 110.72558 * 337.48688 * 11 9 7 28 28 H 1.09008 * 110.71866 * 100.77551 * 11 9 7 29 29 H 1.09008 * 110.66994 * 278.97943 * 12 11 9 30 30 H 1.08995 * 110.66889 * 155.85292 * 12 11 9 31 31 H 1.08995 * 109.46894 * 67.40184 * 14 13 12 32 32 H 1.09001 * 109.46322 * 187.39405 * 14 13 12 33 33 H 1.08997 * 110.51544 * 335.83003 * 17 15 14 34 34 H 1.09000 * 110.51191 * 98.54641 * 17 15 14 35 35 H 1.09004 * 110.51049 * 118.64446 * 18 17 15 36 36 H 1.08999 * 110.50816 * 241.21637 * 18 17 15 37 37 H 1.08990 * 115.55125 * 34.33184 * 21 19 18 38 38 H 1.09002 * 117.49914 * 0.02562 * 22 21 19 39 39 H 1.08997 * 117.49693 * 145.02449 * 22 21 19 40 40 H 1.09002 * 117.49824 * 214.98305 * 23 21 19 41 41 H 1.09002 * 117.49947 * 359.97392 * 23 21 19 42 42 H 1.09006 * 109.91896 * 265.97442 * 25 13 12 43 43 H 1.08996 * 110.07905 * 144.77530 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1941 -0.0011 10 1 3.8895 -0.6511 0.8651 11 6 4.0476 -0.5647 -1.3075 12 6 5.2663 -1.4587 -1.6480 13 7 4.8123 -2.8169 -1.2539 14 6 5.9563 -3.7152 -1.0476 15 6 6.8607 -3.6808 -2.2812 16 1 6.2853 -3.9066 -3.1790 17 6 8.0250 -4.6836 -2.1224 18 6 9.2302 -3.9648 -2.7692 19 6 8.6512 -2.6132 -3.2428 20 1 8.3536 -2.6738 -4.2896 21 6 9.6776 -1.4958 -3.0456 22 6 9.3766 -0.4401 -1.9798 23 6 9.2706 -0.0811 -3.4629 24 8 7.4963 -2.3898 -2.4028 25 6 4.0460 -2.6383 -0.0016 26 1 -0.4850 0.8401 0.0004 27 1 3.2980 -0.6175 -2.0970 28 1 4.3602 0.4659 -1.1390 29 1 6.1375 -1.1600 -1.0648 30 1 5.4851 -1.4207 -2.7151 31 1 6.5209 -3.3897 -0.1740 32 1 5.5960 -4.7317 -0.8893 33 1 8.2186 -4.8802 -1.0679 34 1 7.8050 -5.6112 -2.6508 35 1 10.0196 -3.8061 -2.0344 36 1 9.6075 -4.5384 -3.6158 37 1 10.7190 -1.7832 -3.1898 38 1 8.4476 -0.5420 -1.4188 39 1 10.2201 -0.0330 -1.4224 40 1 10.0444 0.5623 -3.8816 41 1 8.2718 0.0534 -3.8782 42 1 4.6980 -2.7933 0.8581 43 1 3.2143 -3.3421 0.0318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715415486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:49 Heat of formation + Delta-G solvation = -35.762276 kcal Electronic energy + Delta-G solvation = -21161.459920 eV Core-core repulsion = 18206.350045 eV Total energy + Delta-G solvation = -2955.109875 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97990 -39.51208 -37.41303 -35.13451 -33.40212 -32.93584 -30.31529 -30.03269 -27.02408 -25.48647 -23.45761 -23.06930 -22.36581 -21.53992 -21.15976 -20.99642 -19.01449 -17.65182 -17.03447 -16.62624 -16.49858 -16.30307 -15.73912 -15.50141 -14.90508 -14.77677 -14.55923 -14.22779 -14.01050 -13.31184 -13.20895 -12.99748 -12.81173 -12.65397 -12.44797 -12.40173 -12.28398 -12.09188 -11.93421 -11.70268 -11.63342 -11.48681 -11.29492 -11.08612 -11.00885 -10.99687 -10.73205 -10.48475 -9.24532 -8.28901 -6.31110 1.32289 1.33572 1.44043 2.33792 2.81228 2.98312 3.03969 3.16070 3.60118 3.71439 3.98788 4.00315 4.07473 4.11254 4.14704 4.21936 4.28776 4.39482 4.45842 4.49746 4.55134 4.64554 4.71604 4.76510 4.83119 4.84526 4.94327 4.99195 5.01273 5.04098 5.08091 5.18651 5.24263 5.25895 5.29958 5.34923 5.38757 5.47222 5.70509 6.04501 6.09851 6.24416 6.35346 6.73667 7.32838 8.88134 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025276 B = 0.005339 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.486952 B = 5243.338073 C = 6104.552241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.249 1.249 7 C -0.507 4.507 8 H 0.034 0.966 9 C 0.000 4.000 10 H 0.028 0.972 11 C -0.132 4.132 12 C 0.073 3.927 13 N -0.528 5.528 14 C 0.053 3.947 15 C 0.077 3.923 16 H 0.068 0.932 17 C -0.142 4.142 18 C -0.137 4.137 19 C 0.091 3.909 20 H 0.070 0.930 21 C -0.146 4.146 22 C -0.176 4.176 23 C -0.178 4.178 24 O -0.377 6.377 25 C 0.063 3.937 26 H 0.265 0.735 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.492 -6.316 -6.834 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.173 1.173 7 C -0.545 4.545 8 H 0.052 0.948 9 C -0.020 4.020 10 H 0.046 0.954 11 C -0.170 4.170 12 C -0.054 4.054 13 N -0.253 5.253 14 C -0.075 4.075 15 C 0.020 3.980 16 H 0.086 0.914 17 C -0.180 4.180 18 C -0.175 4.175 19 C 0.033 3.967 20 H 0.088 0.912 21 C -0.164 4.164 22 C -0.213 4.213 23 C -0.215 4.215 24 O -0.297 6.297 25 C -0.065 4.065 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.956 -6.267 -7.135 25.770 hybrid contribution -0.084 1.030 0.697 1.246 sum 23.872 -5.237 -6.438 25.273 Atomic orbital electron populations 1.70052 1.08125 1.27915 1.53114 1.25824 0.95371 1.02825 0.94299 0.85906 0.79296 0.79030 0.79172 1.19146 1.21734 1.17287 1.21320 0.90835 0.92924 1.49434 0.94789 1.19964 0.94378 0.93666 0.93966 0.95390 1.22868 0.97405 0.97701 0.99048 1.22929 0.94346 0.87555 1.00601 1.64770 1.20776 1.10385 1.29365 1.22468 0.90391 0.98331 0.96273 1.22974 0.93783 0.83782 0.97498 0.91369 1.22909 0.93647 0.98803 1.02615 1.22889 0.98076 0.94794 1.01694 1.22610 0.85492 0.94154 0.94405 0.91203 1.22436 0.99420 0.89392 1.05187 1.22814 1.03150 1.03050 0.92250 1.22957 1.02651 0.98078 0.97851 1.89310 1.40600 1.29276 1.70511 1.22681 0.96464 0.97351 0.90018 0.92594 0.93036 0.93040 0.93553 0.90288 0.94501 0.88601 0.90420 0.88846 0.90180 0.88759 0.84936 0.90122 0.88088 0.87393 0.90152 0.94067 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 2 C 0.01 0.81 5.46 84.66 0.46 1.27 16 3 Si 0.94 46.16 24.86 68.60 1.71 47.87 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.25 -11.42 6.41 99.48 0.64 -10.78 16 7 C -0.51 -30.05 8.96 25.60 0.23 -29.82 16 8 H 0.03 2.22 7.59 -2.91 -0.02 2.20 16 9 C 0.00 -0.02 2.43 -10.66 -0.03 -0.04 16 10 H 0.03 1.37 7.09 -2.39 -0.02 1.36 16 11 C -0.13 -5.89 4.94 31.80 0.16 -5.73 16 12 C 0.07 2.72 4.71 86.65 0.41 3.13 16 13 N -0.53 -19.59 5.40 -883.01 -4.76 -24.36 16 14 C 0.05 1.50 4.78 86.30 0.41 1.91 16 15 C 0.08 1.82 3.14 31.10 0.10 1.92 16 16 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 17 C -0.14 -2.29 6.63 31.61 0.21 -2.08 16 18 C -0.14 -1.94 6.62 31.61 0.21 -1.73 16 19 C 0.09 1.72 3.64 31.10 0.11 1.83 16 20 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 21 C -0.15 -2.53 5.60 -10.79 -0.06 -2.59 16 22 C -0.18 -3.63 9.89 30.58 0.30 -3.32 16 23 C -0.18 -3.38 10.24 30.58 0.31 -3.07 16 24 O -0.38 -9.59 6.11 -148.98 -0.91 -10.50 16 25 C 0.06 2.63 6.35 86.45 0.55 3.18 16 26 H 0.27 15.94 8.31 -92.71 -0.77 15.16 16 27 H 0.05 2.51 7.86 -2.39 -0.02 2.49 16 28 H 0.05 2.20 6.18 -2.38 -0.01 2.19 16 29 H 0.05 1.68 7.22 -2.38 -0.02 1.66 16 30 H 0.08 2.84 7.19 -2.39 -0.02 2.83 16 31 H 0.04 1.05 7.81 -2.39 -0.02 1.03 16 32 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 1.24 7.87 -2.39 -0.02 1.22 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.07 7.87 -2.38 -0.02 1.06 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 1.68 8.13 -2.39 -0.02 1.66 16 38 H 0.08 2.12 7.06 -2.39 -0.02 2.11 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.04 1.56 7.57 -2.38 -0.02 1.54 16 43 H 0.06 2.66 7.39 -2.39 -0.02 2.65 16 Total: -1.00 -67.75 324.61 0.60 -67.15 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.89 Total: 15.83 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.38 Total: -35.15 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -4.47 Total: -85.20 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.91 Total: -10.50 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.71 Total: 47.87 kcal Total: -67.75 0.60 -67.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715415486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.390 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds