Wall clock time and date at job start Mon Mar 30 2020 07:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.64608 * 61.69813 * 9 7 2 11 11 C 1.54596 * 110.72287 * 298.54594 * 9 7 2 12 12 C 1.54000 * 105.13824 * 219.68665 * 11 9 7 13 13 N 1.47901 * 107.05993 * 358.77528 * 12 11 9 14 14 C 1.46894 * 111.00325 * 145.84287 * 13 12 11 15 15 C 1.53003 * 109.46905 * 69.87256 * 14 13 12 16 16 H 1.08997 * 110.27776 * 307.09478 * 15 14 13 17 17 C 1.54938 * 110.31308 * 184.99867 * 15 14 13 18 18 C 1.55307 * 100.94666 * 204.64224 * 17 15 14 19 19 C 1.54382 * 102.24861 * 34.13452 * 18 17 15 20 20 H 1.08997 * 109.83080 * 98.25041 * 19 18 17 21 21 C 1.52999 * 109.82694 * 219.12787 * 19 18 17 22 22 C 1.52992 * 117.50145 * 248.62341 * 21 19 18 23 23 C 1.52999 * 60.00219 * 252.51238 * 22 21 19 24 24 O 1.43236 * 107.59186 * 338.64394 * 19 18 17 25 25 C 1.48538 * 105.81823 * 25.32706 * 13 12 11 26 26 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 27 27 H 1.09001 * 110.30694 * 338.60083 * 11 9 7 28 28 H 1.09000 * 110.30913 * 100.76959 * 11 9 7 29 29 H 1.08999 * 109.91396 * 118.12661 * 12 11 9 30 30 H 1.08994 * 109.91334 * 239.42368 * 12 11 9 31 31 H 1.08995 * 109.47185 * 189.87184 * 14 13 12 32 32 H 1.09000 * 109.47278 * 309.88173 * 14 13 12 33 33 H 1.09000 * 111.12456 * 322.56405 * 17 15 14 34 34 H 1.09004 * 111.12376 * 86.72160 * 17 15 14 35 35 H 1.09004 * 110.84615 * 152.32450 * 18 17 15 36 36 H 1.09001 * 110.84393 * 275.74177 * 18 17 15 37 37 H 1.09003 * 115.55176 * 34.33602 * 21 19 18 38 38 H 1.09005 * 117.50125 * 0.02562 * 22 21 19 39 39 H 1.08999 * 117.50179 * 145.02091 * 22 21 19 40 40 H 1.08994 * 117.49635 * 252.50927 * 23 22 21 41 41 H 1.09001 * 117.49916 * 107.48825 * 23 22 21 42 42 H 1.08998 * 110.66629 * 202.35224 * 25 13 12 43 43 H 1.09002 * 110.66325 * 79.23186 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6405 -2.5904 -0.8977 11 6 0.3787 -2.6271 1.2704 12 6 0.5065 -4.1007 1.6992 13 7 1.3767 -4.7676 0.7066 14 6 2.1985 -5.8069 1.3408 15 6 1.3060 -6.9762 1.7621 16 1 0.4758 -6.6176 2.3705 17 6 2.1315 -8.0280 2.5450 18 6 1.2884 -9.3085 2.2972 19 6 0.7544 -9.0775 0.8672 20 1 1.3737 -9.6160 0.1498 21 6 -0.6935 -9.5621 0.7694 22 6 -0.9682 -10.7985 -0.0888 23 6 -1.3979 -9.4150 -0.5808 24 8 0.8149 -7.6708 0.6045 25 6 2.2271 -3.6956 0.1286 26 1 -0.4850 -0.8401 -0.0004 27 1 0.7545 -1.9707 2.0553 28 1 -0.6599 -2.3884 1.0415 29 1 0.9583 -4.1614 2.6893 30 1 -0.4765 -4.5716 1.7071 31 1 2.9487 -6.1592 0.6329 32 1 2.6936 -5.3930 2.2192 33 1 3.1334 -8.1306 2.1282 34 1 2.1728 -7.7841 3.6066 35 1 1.9150 -10.1995 2.3382 36 1 0.4699 -9.3786 3.0137 37 1 -1.2956 -9.4291 1.6682 38 1 -0.1174 -11.2671 -0.5834 39 1 -1.7510 -11.4794 0.2454 40 1 -2.4634 -9.1857 -0.5703 41 1 -0.8298 -8.9731 -1.3994 42 1 2.6051 -3.9903 -0.8503 43 1 3.0488 -3.4514 0.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715415491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:58 Heat of formation + Delta-G solvation = -28.278603 kcal Electronic energy + Delta-G solvation = -20545.731427 eV Core-core repulsion = 17590.946068 eV Total energy + Delta-G solvation = -2954.785359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87536 -38.06644 -36.64152 -33.62750 -32.15243 -31.14799 -28.66158 -28.18776 -25.21814 -23.75255 -22.54063 -22.22627 -21.48763 -20.41398 -19.99209 -19.31062 -16.94397 -16.65653 -16.40914 -15.17984 -14.96424 -14.73509 -14.64615 -13.74215 -13.52851 -13.40573 -12.93574 -12.86563 -12.44178 -11.99307 -11.86457 -11.71081 -11.62472 -11.47756 -11.46851 -10.99495 -10.86917 -10.72412 -10.52554 -10.45844 -10.29389 -10.12675 -10.06201 -9.75527 -9.41969 -9.29509 -8.44376 -8.30793 -7.73696 -6.29140 -4.01564 3.45512 3.46580 3.47343 3.66097 4.05508 4.37360 4.39806 4.46182 4.58833 4.77987 4.87118 4.97129 5.06461 5.15363 5.25975 5.33981 5.43059 5.48207 5.49802 5.55899 5.61050 5.69846 5.75492 5.80275 5.86670 5.93704 5.95042 6.02647 6.13328 6.15399 6.23851 6.33948 6.45627 6.73705 6.98174 6.99763 7.21665 7.31439 7.52567 7.69098 7.80030 8.31052 8.47428 8.93552 9.71056 11.09256 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036402 B = 0.003772 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.008349 B = 7421.925763 C = 7810.416537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.020 3.980 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.596 4.596 8 H 0.048 0.952 9 C 0.037 3.963 10 H 0.028 0.972 11 C -0.120 4.120 12 C 0.038 3.962 13 N -0.513 5.513 14 C 0.050 3.950 15 C 0.090 3.910 16 H 0.068 0.932 17 C -0.154 4.154 18 C -0.146 4.146 19 C 0.106 3.894 20 H 0.076 0.924 21 C -0.166 4.166 22 C -0.179 4.179 23 C -0.163 4.163 24 O -0.348 6.348 25 C 0.049 3.951 26 H 0.273 0.727 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -20.040 5.070 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.185 4.185 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.635 4.635 8 H 0.066 0.934 9 C 0.018 3.982 10 H 0.046 0.954 11 C -0.159 4.159 12 C -0.090 4.090 13 N -0.237 5.237 14 C -0.080 4.080 15 C 0.032 3.968 16 H 0.086 0.914 17 C -0.192 4.192 18 C -0.183 4.183 19 C 0.048 3.952 20 H 0.094 0.906 21 C -0.184 4.184 22 C -0.217 4.217 23 C -0.200 4.200 24 O -0.267 6.267 25 C -0.078 4.078 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.905 -18.554 4.472 19.107 hybrid contribution 0.715 -1.487 0.978 1.917 sum 1.619 -20.040 5.450 20.831 Atomic orbital electron populations 1.70777 1.06826 1.31184 1.46080 1.25764 0.96578 1.02425 0.93690 0.83572 0.74897 0.75527 0.76434 1.20823 1.21606 1.21485 1.21937 0.93961 0.91399 1.56188 0.93371 1.19683 0.92736 0.92586 0.93210 0.95379 1.22616 1.00507 0.92196 1.00555 1.22914 0.96948 0.96333 0.92830 1.64740 1.18888 1.10952 1.29071 1.22364 0.95073 0.92538 0.97978 1.22965 0.95243 0.91983 0.86616 0.91436 1.23327 0.99783 0.94749 1.01368 1.23118 0.99923 0.98519 0.96755 1.22227 0.93096 0.83922 0.95943 0.90635 1.22677 0.97446 1.02352 0.95946 1.22954 1.03454 0.91067 1.04178 1.22814 1.00785 0.98720 0.97686 1.88639 1.86252 1.16141 1.35687 1.23234 0.95493 0.91220 0.97823 0.91473 0.92213 0.92813 0.95382 0.91955 0.90685 0.93994 0.90303 0.90094 0.90291 0.90518 0.87959 0.88893 0.88898 0.88915 0.88277 0.91796 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.62 13.42 55.43 0.74 -26.87 16 2 C 0.02 0.57 5.33 -17.82 -0.10 0.48 16 3 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.60 -16.92 8.42 -34.44 -0.29 -17.21 16 8 H 0.05 1.35 7.78 -52.49 -0.41 0.95 16 9 C 0.04 0.96 2.62 -89.91 -0.24 0.72 16 10 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 11 C -0.12 -2.86 5.34 -25.37 -0.14 -3.00 16 12 C 0.04 0.75 5.73 -2.75 -0.02 0.74 16 13 N -0.51 -10.24 5.26 -230.45 -1.21 -11.46 16 14 C 0.05 0.80 4.47 -3.83 -0.02 0.78 16 15 C 0.09 1.26 3.47 -25.71 -0.09 1.17 16 16 H 0.07 1.00 7.36 -51.93 -0.38 0.61 16 17 C -0.15 -1.60 6.57 -24.48 -0.16 -1.76 16 18 C -0.15 -1.36 6.54 -24.78 -0.16 -1.52 16 19 C 0.11 1.23 3.71 -26.01 -0.10 1.13 16 20 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 21 C -0.17 -1.78 5.38 -90.62 -0.49 -2.27 16 22 C -0.18 -1.61 10.18 -26.74 -0.27 -1.88 16 23 C -0.16 -1.80 10.19 -26.73 -0.27 -2.07 16 24 O -0.35 -5.37 10.65 -35.23 -0.38 -5.75 16 25 C 0.05 1.10 5.95 -1.90 -0.01 1.08 16 26 H 0.27 8.22 5.53 -40.82 -0.23 7.99 16 27 H 0.06 1.51 7.84 -51.93 -0.41 1.10 16 28 H 0.05 1.31 6.97 -51.93 -0.36 0.95 16 29 H 0.03 0.52 7.57 -51.93 -0.39 0.13 16 30 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 32 H 0.04 0.65 7.82 -51.93 -0.41 0.24 16 33 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 37 H 0.10 1.07 7.85 -51.93 -0.41 0.66 16 38 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -30.82 335.95 -10.85 -41.67 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.64 Total: 0.71 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -2.34 Total: -23.59 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.47 Total: -38.33 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.82 -10.85 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715415491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.389 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds