Wall clock time and date at job start Mon Mar 30 2020 07:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.64608 * 61.69813 * 9 7 2 11 11 C 1.54596 * 110.72287 * 298.54594 * 9 7 2 12 12 C 1.54000 * 105.13824 * 219.68665 * 11 9 7 13 13 N 1.47901 * 107.05993 * 358.77528 * 12 11 9 14 14 C 1.46894 * 111.00325 * 145.84287 * 13 12 11 15 15 C 1.53003 * 109.46905 * 69.87256 * 14 13 12 16 16 H 1.08997 * 110.27776 * 307.09478 * 15 14 13 17 17 C 1.54938 * 110.31308 * 184.99867 * 15 14 13 18 18 C 1.55307 * 100.94666 * 204.64224 * 17 15 14 19 19 C 1.54382 * 102.24861 * 34.13452 * 18 17 15 20 20 H 1.08997 * 109.83080 * 98.25041 * 19 18 17 21 21 C 1.52999 * 109.82694 * 219.12787 * 19 18 17 22 22 C 1.52992 * 117.50145 * 248.62341 * 21 19 18 23 23 C 1.52999 * 60.00219 * 252.51238 * 22 21 19 24 24 O 1.43236 * 107.59186 * 338.64394 * 19 18 17 25 25 C 1.48538 * 105.81823 * 25.32706 * 13 12 11 26 26 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 27 27 H 1.09001 * 110.30694 * 338.60083 * 11 9 7 28 28 H 1.09000 * 110.30913 * 100.76959 * 11 9 7 29 29 H 1.08999 * 109.91396 * 118.12661 * 12 11 9 30 30 H 1.08994 * 109.91334 * 239.42368 * 12 11 9 31 31 H 1.08995 * 109.47185 * 189.87184 * 14 13 12 32 32 H 1.09000 * 109.47278 * 309.88173 * 14 13 12 33 33 H 1.09000 * 111.12456 * 322.56405 * 17 15 14 34 34 H 1.09004 * 111.12376 * 86.72160 * 17 15 14 35 35 H 1.09004 * 110.84615 * 152.32450 * 18 17 15 36 36 H 1.09001 * 110.84393 * 275.74177 * 18 17 15 37 37 H 1.09003 * 115.55176 * 34.33602 * 21 19 18 38 38 H 1.09005 * 117.50125 * 0.02562 * 22 21 19 39 39 H 1.08999 * 117.50179 * 145.02091 * 22 21 19 40 40 H 1.08994 * 117.49635 * 252.50927 * 23 22 21 41 41 H 1.09001 * 117.49916 * 107.48825 * 23 22 21 42 42 H 1.08998 * 110.66629 * 202.35224 * 25 13 12 43 43 H 1.09002 * 110.66325 * 79.23186 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6405 -2.5904 -0.8977 11 6 0.3787 -2.6271 1.2704 12 6 0.5065 -4.1007 1.6992 13 7 1.3767 -4.7676 0.7066 14 6 2.1985 -5.8069 1.3408 15 6 1.3060 -6.9762 1.7621 16 1 0.4758 -6.6176 2.3705 17 6 2.1315 -8.0280 2.5450 18 6 1.2884 -9.3085 2.2972 19 6 0.7544 -9.0775 0.8672 20 1 1.3737 -9.6160 0.1498 21 6 -0.6935 -9.5621 0.7694 22 6 -0.9682 -10.7985 -0.0888 23 6 -1.3979 -9.4150 -0.5808 24 8 0.8149 -7.6708 0.6045 25 6 2.2271 -3.6956 0.1286 26 1 -0.4850 -0.8401 -0.0004 27 1 0.7545 -1.9707 2.0553 28 1 -0.6599 -2.3884 1.0415 29 1 0.9583 -4.1614 2.6893 30 1 -0.4765 -4.5716 1.7071 31 1 2.9487 -6.1592 0.6329 32 1 2.6936 -5.3930 2.2192 33 1 3.1334 -8.1306 2.1282 34 1 2.1728 -7.7841 3.6066 35 1 1.9150 -10.1995 2.3382 36 1 0.4699 -9.3786 3.0137 37 1 -1.2956 -9.4291 1.6682 38 1 -0.1174 -11.2671 -0.5834 39 1 -1.7510 -11.4794 0.2454 40 1 -2.4634 -9.1857 -0.5703 41 1 -0.8298 -8.9731 -1.3994 42 1 2.6051 -3.9903 -0.8503 43 1 3.0488 -3.4514 0.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715415491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:58 Heat of formation + Delta-G solvation = -46.863226 kcal Electronic energy + Delta-G solvation = -20546.537317 eV Core-core repulsion = 17590.946068 eV Total energy + Delta-G solvation = -2955.591249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89729 -39.67708 -37.56518 -35.55644 -33.18612 -32.64806 -30.13395 -29.94512 -26.67097 -25.63289 -23.39192 -23.24617 -22.43501 -21.87054 -21.50737 -20.77154 -18.92783 -17.78480 -17.30355 -16.90218 -16.26243 -15.97359 -15.63311 -15.56922 -15.06751 -14.65924 -14.31995 -14.12703 -13.75906 -13.53604 -13.45994 -13.03794 -12.76099 -12.58511 -12.46257 -12.40254 -12.34964 -12.07166 -11.95752 -11.86884 -11.73926 -11.70380 -11.31664 -11.17363 -10.93141 -10.58373 -10.49003 -10.40425 -9.32030 -8.59155 -6.33023 1.53329 1.61507 1.80741 2.57550 2.59453 3.02066 3.20583 3.26253 3.57285 3.58850 3.78602 3.92341 4.00219 4.09620 4.13573 4.16448 4.26424 4.33126 4.35252 4.39933 4.48301 4.56609 4.64624 4.68016 4.72564 4.78044 4.83979 4.88666 4.98498 5.03383 5.04737 5.07302 5.10717 5.24072 5.24697 5.31991 5.33762 5.59423 5.80257 6.11525 6.15545 6.22118 6.34284 6.65110 7.48730 8.79309 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036402 B = 0.003772 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.008349 B = 7421.925763 C = 7810.416537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.030 4.030 3 Si 1.115 2.885 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.610 4.610 8 H 0.048 0.952 9 C 0.025 3.975 10 H -0.007 1.007 11 C -0.111 4.111 12 C 0.050 3.950 13 N -0.523 5.523 14 C 0.049 3.951 15 C 0.088 3.912 16 H 0.059 0.941 17 C -0.145 4.145 18 C -0.136 4.136 19 C 0.098 3.902 20 H 0.078 0.922 21 C -0.174 4.174 22 C -0.155 4.155 23 C -0.186 4.186 24 O -0.382 6.382 25 C 0.062 3.938 26 H 0.262 0.738 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.752 -21.794 6.491 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.229 4.229 3 Si 0.937 3.063 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.649 4.649 8 H 0.066 0.934 9 C 0.005 3.995 10 H 0.011 0.989 11 C -0.150 4.150 12 C -0.077 4.077 13 N -0.247 5.247 14 C -0.080 4.080 15 C 0.030 3.970 16 H 0.077 0.923 17 C -0.183 4.183 18 C -0.174 4.174 19 C 0.040 3.960 20 H 0.096 0.904 21 C -0.192 4.192 22 C -0.191 4.191 23 C -0.223 4.223 24 O -0.302 6.302 25 C -0.065 4.065 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.193 -20.350 5.898 21.301 hybrid contribution 0.290 -0.995 0.473 1.139 sum 2.483 -21.345 6.371 22.413 Atomic orbital electron populations 1.70893 1.07843 1.30576 1.48093 1.27260 0.96637 1.06298 0.92686 0.82956 0.74116 0.71375 0.77845 1.21034 1.19518 1.19713 1.22293 0.94170 0.92707 1.55698 0.93408 1.19667 0.93520 0.93637 0.92632 0.98873 1.22397 0.98823 0.94774 0.98965 1.22778 0.97870 0.93403 0.93689 1.64717 1.19288 1.10724 1.29994 1.22487 0.95213 0.92045 0.98223 1.22949 0.95187 0.92204 0.86659 0.92312 1.23302 0.99546 0.93703 1.01785 1.23109 1.00244 0.98881 0.95125 1.22436 0.93747 0.82140 0.97656 0.90408 1.22727 0.97081 1.03695 0.95726 1.23033 1.03809 0.90128 1.02169 1.22806 1.00707 1.01117 0.97670 1.88606 1.86515 1.18322 1.36754 1.22984 0.94762 0.90523 0.98240 0.92751 0.94008 0.94499 0.93249 0.91047 0.90456 0.92706 0.89617 0.88308 0.87970 0.89744 0.87669 0.87957 0.87104 0.88816 0.90166 0.91809 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.21 13.42 21.45 0.29 -57.92 16 2 C -0.03 -1.76 5.33 84.65 0.45 -1.31 16 3 Si 1.12 50.80 29.90 68.60 2.05 52.85 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.61 -35.24 8.42 25.60 0.22 -35.02 16 8 H 0.05 2.70 7.78 -2.91 -0.02 2.67 16 9 C 0.02 1.31 2.62 -10.33 -0.03 1.29 16 10 H -0.01 -0.41 8.08 -2.39 -0.02 -0.43 16 11 C -0.11 -5.43 5.34 31.48 0.17 -5.26 16 12 C 0.05 1.99 5.73 86.45 0.50 2.49 16 13 N -0.52 -20.67 5.26 -883.02 -4.65 -25.32 16 14 C 0.05 1.49 4.47 86.31 0.39 1.87 16 15 C 0.09 2.31 3.47 31.26 0.11 2.42 16 16 H 0.06 1.63 7.36 -2.39 -0.02 1.62 16 17 C -0.15 -2.55 6.57 32.05 0.21 -2.34 16 18 C -0.14 -2.09 6.54 31.86 0.21 -1.88 16 19 C 0.10 2.08 3.71 31.06 0.12 2.20 16 20 H 0.08 1.58 7.93 -2.39 -0.02 1.56 16 21 C -0.17 -3.48 5.38 -10.80 -0.06 -3.53 16 22 C -0.15 -2.44 10.18 30.59 0.31 -2.13 16 23 C -0.19 -4.03 10.19 30.59 0.31 -3.72 16 24 O -0.38 -11.45 10.65 -148.98 -1.59 -13.04 16 25 C 0.06 2.79 5.95 86.65 0.52 3.30 16 26 H 0.26 16.44 5.53 -92.70 -0.51 15.92 16 27 H 0.04 2.15 7.84 -2.39 -0.02 2.13 16 28 H 0.04 1.88 6.97 -2.39 -0.02 1.86 16 29 H 0.05 1.74 7.57 -2.39 -0.02 1.73 16 30 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16 31 H 0.08 2.33 8.11 -2.39 -0.02 2.31 16 32 H 0.05 1.55 7.82 -2.39 -0.02 1.53 16 33 H 0.09 1.40 8.06 -2.39 -0.02 1.38 16 34 H 0.10 1.40 8.14 -2.38 -0.02 1.39 16 35 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 37 H 0.11 2.01 7.85 -2.39 -0.02 1.99 16 38 H 0.10 1.43 8.06 -2.38 -0.02 1.41 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 42 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.04 1.61 7.92 -2.39 -0.02 1.59 16 Total: -1.00 -67.93 335.95 0.73 -67.20 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.21 Total: 17.87 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 3.41 Total: -41.64 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -4.36 Total: -83.25 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.59 Total: -13.04 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -67.93 0.73 -67.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715415491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.339 kcal (2) G-P(sol) polarization free energy of solvation -67.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds