Wall clock time and date at job start Mon Mar 30 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86791 * 119.99904 * 2 1 4 4 H 1.48504 * 109.47384 * 272.17727 * 3 2 1 5 5 H 1.48506 * 109.47470 * 32.17606 * 3 2 1 6 6 H 1.48499 * 109.47310 * 152.17396 * 3 2 1 7 7 C 1.38808 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00005 * 336.67369 * 7 2 1 9 9 N 1.36941 * 120.00010 * 156.68242 * 7 2 1 10 10 C 1.46498 * 119.99436 * 320.92660 * 9 7 2 11 11 C 1.53002 * 109.47249 * 270.00009 * 10 9 7 12 12 H 1.08997 * 109.39782 * 60.11630 * 11 10 9 13 13 C 1.53078 * 109.43720 * 180.02562 * 11 10 9 14 14 C 1.53344 * 109.07677 * 179.48549 * 13 11 10 15 15 C 1.52847 * 108.74572 * 305.13929 * 14 13 11 16 16 C 1.53356 * 113.53673 * 282.27762 * 15 14 13 17 17 C 1.53862 * 86.95155 * 220.08050 * 16 15 14 18 18 C 1.53321 * 113.60151 * 184.29489 * 15 14 13 19 19 C 1.52757 * 112.68395 * 53.21715 * 15 14 13 20 20 O 1.42862 * 109.43295 * 300.22778 * 11 10 9 21 21 C 1.46494 * 120.00248 * 140.92871 * 9 7 2 22 22 C 1.52998 * 117.49999 * 4.20635 * 21 9 7 23 23 C 1.53001 * 117.49921 * 295.58239 * 21 9 7 24 24 H 0.97000 * 120.00202 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47027 * 150.00009 * 10 9 7 26 26 H 1.08996 * 109.47661 * 30.00123 * 10 9 7 27 27 H 1.09001 * 109.53345 * 59.60438 * 13 11 10 28 28 H 1.09000 * 109.53632 * 299.36793 * 13 11 10 29 29 H 1.09009 * 109.59292 * 185.36635 * 14 13 11 30 30 H 1.08997 * 109.71589 * 64.99161 * 14 13 11 31 31 H 1.09001 * 113.63536 * 334.59390 * 16 15 14 32 32 H 1.09004 * 113.63919 * 105.57046 * 16 15 14 33 33 H 1.09001 * 113.60176 * 270.53953 * 17 16 15 34 34 H 1.08999 * 113.60359 * 139.66940 * 17 16 15 35 35 H 1.09005 * 113.63295 * 254.37640 * 18 15 14 36 36 H 1.08995 * 113.63689 * 25.33731 * 18 15 14 37 37 H 1.09002 * 109.52422 * 66.28039 * 19 15 14 38 38 H 1.09000 * 109.52799 * 186.48282 * 19 15 14 39 39 H 1.09003 * 115.54877 * 149.91513 * 21 9 7 40 40 H 1.08998 * 117.49746 * 0.02562 * 22 21 9 41 41 H 1.09001 * 117.49919 * 145.02036 * 22 21 9 42 42 H 1.08997 * 117.50306 * 214.98008 * 23 21 9 43 43 H 1.09005 * 117.49862 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4517 2.0730 -1.3991 5 1 1.4714 2.6390 0.7456 6 1 3.5700 1.4273 0.6535 7 6 2.0103 -1.2021 -0.0005 8 1 1.5364 -2.0994 0.3694 9 7 3.2958 -1.2504 -0.4700 10 6 3.6743 -0.4692 -1.6501 11 6 3.4544 -1.3091 -2.9099 12 1 2.4026 -1.5863 -2.9810 13 6 3.8507 -0.4923 -4.1423 14 6 3.6393 -1.3459 -5.3985 15 6 4.4124 -2.6548 -5.2389 16 6 5.9190 -2.5101 -5.4854 17 6 5.8462 -3.8627 -6.2153 18 6 4.3628 -3.5524 -6.4808 19 6 4.0725 -3.3851 -3.9410 20 8 4.2537 -2.4910 -2.8387 21 6 4.2923 -2.0832 0.2078 22 6 3.8131 -2.9508 1.3734 23 6 4.6664 -1.7098 1.6436 24 1 -0.4850 0.8400 0.0004 25 1 4.7255 -0.1895 -1.5788 26 1 3.0617 0.4308 -1.7019 27 1 4.9000 -0.2065 -4.0681 28 1 3.2313 0.4026 -4.2012 29 1 4.0078 -0.8081 -6.2722 30 1 2.5780 -1.5611 -5.5226 31 1 6.1771 -1.6753 -6.1370 32 1 6.5157 -2.5373 -4.5736 33 1 6.0024 -4.7205 -5.5612 34 1 6.4523 -3.9034 -7.1203 35 1 3.7087 -4.4172 -6.3691 36 1 4.1898 -3.0063 -7.4081 37 1 3.0357 -3.7201 -3.9722 38 1 4.7311 -4.2458 -3.8240 39 1 5.0801 -2.4858 -0.4291 40 1 2.7563 -2.9022 1.6356 41 1 4.2855 -3.9244 1.5035 42 1 5.7000 -1.8671 1.9516 43 1 4.1706 -0.8447 2.0841 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716359287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:03 Heat of formation + Delta-G solvation = 2.286257 kcal Electronic energy + Delta-G solvation = -21578.815109 eV Core-core repulsion = 18625.355142 eV Total energy + Delta-G solvation = -2953.459967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38651 -39.11701 -37.84569 -35.34998 -34.03506 -33.10914 -30.39026 -27.58315 -26.51080 -26.22402 -25.00437 -23.42554 -22.89492 -21.72439 -21.37784 -19.34462 -18.50417 -17.54104 -17.11116 -16.74986 -16.71417 -16.22837 -15.51476 -15.38829 -14.98052 -14.80838 -14.44851 -14.20814 -13.89054 -13.60280 -13.39588 -13.26917 -13.18579 -12.68621 -12.49256 -12.31207 -12.12569 -12.03133 -11.93380 -11.83768 -11.59240 -11.31400 -11.27442 -10.98905 -10.81862 -10.78337 -10.61055 -10.17898 -8.57700 -8.22191 -5.58438 1.24713 1.38125 1.50155 2.38786 2.88933 2.99717 3.20880 3.38479 3.65165 3.68150 3.76005 4.00972 4.06023 4.16214 4.19886 4.34537 4.34828 4.44741 4.48817 4.55472 4.61205 4.69417 4.73212 4.79118 4.87649 4.91610 4.93655 4.93849 4.99645 5.05447 5.06620 5.13300 5.17752 5.24138 5.34800 5.38363 5.52223 5.53920 5.59618 5.95346 6.20455 6.46242 6.99961 7.63511 8.07796 8.97625 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.006543 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.916188 B = 4278.638661 C = 4899.146466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.016 4.016 3 Si 0.929 3.071 4 H -0.265 1.265 5 H -0.307 1.307 6 H -0.262 1.262 7 C -0.249 4.249 8 H 0.041 0.959 9 N -0.579 5.579 10 C 0.143 3.857 11 C 0.087 3.913 12 H 0.023 0.977 13 C -0.144 4.144 14 C -0.100 4.100 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.134 4.134 18 C -0.125 4.125 19 C 0.082 3.918 20 O -0.375 6.375 21 C 0.118 3.882 22 C -0.189 4.189 23 C -0.215 4.215 24 H 0.263 0.737 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.443 -4.842 -13.058 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.212 4.212 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.235 1.235 6 H -0.186 1.186 7 C -0.379 4.379 8 H 0.059 0.941 9 N -0.298 5.298 10 C 0.018 3.982 11 C 0.026 3.974 12 H 0.041 0.959 13 C -0.182 4.182 14 C -0.137 4.137 15 C -0.122 4.122 16 C -0.160 4.160 17 C -0.171 4.171 18 C -0.162 4.162 19 C 0.005 3.995 20 O -0.294 6.294 21 C 0.010 3.990 22 C -0.227 4.227 23 C -0.255 4.255 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.417 -4.781 -12.908 19.222 hybrid contribution -0.838 0.969 0.335 1.324 sum 12.580 -3.812 -12.572 18.189 Atomic orbital electron populations 1.70000 1.07570 1.27398 1.53898 1.26051 0.95588 1.00788 0.98794 0.86086 0.79413 0.80664 0.78073 1.19174 1.23522 1.18592 1.18542 0.88158 0.92994 1.38205 0.94117 1.43607 1.06346 1.52355 1.27443 1.21346 0.98869 0.92858 0.85122 1.22519 0.92840 0.86300 0.95704 0.95881 1.22142 1.02563 0.98706 0.94836 1.21506 0.99714 0.95161 0.97327 1.22224 0.97634 0.96340 0.95982 1.22838 0.94198 0.98498 1.00426 1.22834 0.96271 0.97171 1.00817 1.22865 0.97483 0.99005 0.96839 1.22365 0.99883 0.92203 0.85056 1.87918 1.65002 1.31865 1.44653 1.21379 0.94042 0.96737 0.86811 1.23002 0.99389 0.95200 1.05106 1.23365 0.99799 0.98230 1.04118 0.92796 0.91564 0.93024 0.90279 0.91637 0.89688 0.92947 0.89426 0.92169 0.90091 0.90182 0.91477 0.88971 0.94951 0.87938 0.86377 0.91478 0.87307 0.87228 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.28 13.97 21.65 0.30 -58.98 16 2 C -0.02 -0.91 5.27 84.86 0.45 -0.47 16 3 Si 0.93 46.10 25.32 68.60 1.74 47.83 16 4 H -0.26 -12.19 6.52 99.48 0.65 -11.55 16 5 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.25 -14.29 8.93 84.03 0.75 -13.54 16 8 H 0.04 2.62 6.84 -2.91 -0.02 2.60 16 9 N -0.58 -27.97 2.30 -678.05 -1.56 -29.53 16 10 C 0.14 6.16 4.28 86.38 0.37 6.53 16 11 C 0.09 3.32 2.85 30.62 0.09 3.41 16 12 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 13 C -0.14 -4.33 5.36 30.74 0.16 -4.17 16 14 C -0.10 -2.48 5.21 30.66 0.16 -2.32 16 15 C -0.12 -2.79 0.86 -52.09 -0.04 -2.83 16 16 C -0.12 -2.39 7.11 31.00 0.22 -2.17 16 17 C -0.13 -2.15 7.73 31.18 0.24 -1.91 16 18 C -0.12 -2.22 7.23 30.99 0.22 -2.00 16 19 C 0.08 2.33 5.93 71.90 0.43 2.75 16 20 O -0.38 -13.43 9.28 -148.98 -1.38 -14.82 16 21 C 0.12 4.90 6.16 44.99 0.28 5.18 16 22 C -0.19 -7.51 9.80 30.59 0.30 -7.21 16 23 C -0.21 -8.28 10.34 30.60 0.32 -7.96 16 24 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 26 H 0.05 2.40 3.46 -2.39 -0.01 2.39 16 27 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 1.73 8.03 -2.38 -0.02 1.71 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.54 8.02 -2.39 -0.02 1.52 16 32 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 33 H 0.08 1.28 7.64 -2.39 -0.02 1.26 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.19 8.09 -2.38 -0.02 1.18 16 36 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 37 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 2.53 7.34 -2.39 -0.02 2.51 16 39 H 0.12 4.46 7.54 -2.39 -0.02 4.44 16 40 H 0.07 3.13 6.44 -2.39 -0.02 3.11 16 41 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 42 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -65.38 327.91 3.94 -61.43 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.90 Total: 20.76 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 3.94 Total: -26.70 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -1.26 Total: -88.50 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -1.38 Total: -14.82 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.74 Total: 47.83 kcal Total: -65.38 3.94 -61.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716359287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.720 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds