Wall clock time and date at job start Mon Mar 30 2020 07:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99978 * 2 1 4 4 H 1.48502 * 109.46963 * 270.00102 * 3 2 1 5 5 H 1.48499 * 109.47142 * 30.00172 * 3 2 1 6 6 H 1.48498 * 109.46714 * 150.00218 * 3 2 1 7 7 C 1.37875 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00040 * 359.97438 * 7 2 1 10 10 H 1.10194 * 108.64344 * 301.27975 * 9 7 2 11 11 C 1.52635 * 109.37272 * 182.91115 * 9 7 2 12 12 C 1.52717 * 110.98307 * 190.25984 * 11 9 7 13 13 C 1.52554 * 110.02113 * 48.11687 * 12 11 9 14 14 C 1.53540 * 109.99900 * 302.09420 * 13 12 11 15 15 C 1.51935 * 108.77441 * 178.07544 * 14 13 12 16 16 C 1.51833 * 114.40262 * 104.40364 * 15 14 13 17 17 H 1.10566 * 108.24557 * 165.98891 * 16 15 14 18 18 C 1.52135 * 111.63488 * 284.78847 * 16 15 14 19 19 C 1.52031 * 114.34194 * 77.93925 * 18 16 15 20 20 C 1.52724 * 112.44141 * 41.14908 * 19 18 16 21 21 N 1.46891 * 109.33331 * 309.51111 * 20 19 18 22 22 C 1.46306 * 109.44232 * 66.72721 * 21 20 19 23 23 C 1.44476 * 114.64789 * 296.00073 * 21 20 19 24 24 O 1.42126 * 108.98097 * 60.00047 * 9 7 2 25 25 H 0.97007 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.08658 * 110.26668 * 312.15129 * 11 9 7 27 27 H 1.09487 * 108.63562 * 70.73065 * 11 9 7 28 28 H 1.10029 * 108.72986 * 167.02045 * 12 11 9 29 29 H 1.08796 * 110.51759 * 285.15017 * 12 11 9 30 30 H 1.07130 * 112.27713 * 176.04107 * 13 12 11 31 31 H 1.11146 * 107.71226 * 58.70910 * 13 12 11 32 32 H 1.09924 * 109.60964 * 341.57471 * 15 14 13 33 33 H 1.10010 * 108.54258 * 225.84300 * 15 14 13 34 34 H 1.10300 * 107.62877 * 316.53479 * 18 16 15 35 35 H 1.09189 * 109.60994 * 200.59624 * 18 16 15 36 36 H 1.08344 * 113.11423 * 276.63734 * 19 18 16 37 37 H 1.10467 * 107.61558 * 160.42932 * 19 18 16 38 38 H 1.08874 * 110.44676 * 187.40005 * 20 19 18 39 39 H 1.09232 * 107.36799 * 67.27580 * 20 19 18 40 40 H 1.09094 * 110.22601 * 48.72090 * 22 21 20 41 41 H 1.08616 * 110.77071 * 169.67516 * 22 21 20 42 42 H 1.11584 * 106.84976 * 212.71966 * 23 21 20 43 43 H 1.09942 * 108.07924 * 325.73490 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6058 -2.5333 0.8921 11 6 2.2434 -3.6566 0.0720 12 6 1.5456 -4.9916 -0.1792 13 6 0.6630 -4.8945 -1.4196 14 6 -0.3681 -3.7704 -1.2437 15 6 -1.1993 -3.6666 -2.5113 16 6 -2.5975 -4.2468 -2.3939 17 1 -3.1902 -3.8997 -3.2603 18 6 -2.5771 -5.7679 -2.4156 19 6 -2.1599 -6.4078 -1.1011 20 6 -2.7709 -5.7050 0.1093 21 7 -2.5267 -4.2601 0.0072 22 6 -3.2729 -3.7192 -1.1291 23 6 -1.1338 -3.8796 0.0557 24 8 0.4375 -2.5632 -1.1642 25 1 -0.4850 0.8401 0.0004 26 1 3.0399 -3.5155 -0.6535 27 1 2.6878 -3.6743 1.0724 28 1 2.3108 -5.7634 -0.3509 29 1 0.9642 -5.2877 0.6915 30 1 0.2081 -5.8318 -1.6689 31 1 1.3134 -4.6147 -2.2764 32 1 -0.6732 -4.1628 -3.3391 33 1 -1.2820 -2.6054 -2.7894 34 1 -1.8772 -6.0813 -3.2083 35 1 -3.5634 -6.1436 -2.6956 36 1 -1.0850 -6.4656 -0.9785 37 1 -2.5137 -7.4543 -1.1116 38 1 -2.3515 -6.1029 1.0319 39 1 -3.8485 -5.8811 0.0791 40 1 -4.3081 -4.0618 -1.0979 41 1 -3.2558 -2.6332 -1.1193 42 1 -1.0876 -2.8845 0.5585 43 1 -0.6139 -4.5731 0.7321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717256041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:36 Heat of formation + Delta-G solvation = -48.261076 kcal Electronic energy + Delta-G solvation = -22618.900163 eV Core-core repulsion = 19663.248299 eV Total energy + Delta-G solvation = -2955.651864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40459 -37.57680 -33.25488 -32.80713 -32.59424 -31.59233 -30.35746 -27.22147 -26.17658 -25.01939 -23.13933 -22.26854 -21.89968 -20.87868 -18.78781 -17.28095 -16.49414 -15.50739 -15.40051 -14.77162 -14.57482 -14.52608 -14.24707 -13.77276 -13.70923 -13.36534 -12.76218 -12.63558 -12.19638 -11.94135 -11.63531 -11.51234 -11.35008 -11.10476 -10.91765 -10.77548 -10.70103 -10.52855 -10.43819 -10.26945 -10.20705 -10.04253 -9.84058 -9.81616 -9.33699 -8.73925 -8.42351 -7.93126 -7.30397 -5.95285 -4.06419 3.33987 3.40412 3.42952 4.40059 4.46046 4.84819 4.89994 5.04525 5.11669 5.26892 5.41134 5.42743 5.50702 5.54176 5.64244 5.71562 5.75562 5.77554 5.84870 5.92835 5.99641 6.06905 6.17609 6.22149 6.24351 6.30810 6.35463 6.42558 6.47796 6.53036 6.64810 6.70683 6.75764 6.86876 6.91865 6.98166 7.13403 7.56143 7.61097 7.88150 7.94969 8.37397 8.82609 9.19684 9.62794 11.11780 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.007079 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.816403 B = 3954.390495 C = 4388.591957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.213 3.787 10 H 0.017 0.983 11 C -0.140 4.140 12 C -0.118 4.118 13 C -0.139 4.139 14 C 0.099 3.901 15 C -0.095 4.095 16 C -0.116 4.116 17 H 0.065 0.935 18 C -0.100 4.100 19 C -0.162 4.162 20 C 0.065 3.935 21 N -0.543 5.543 22 C 0.073 3.927 23 C 0.050 3.950 24 O -0.350 6.350 25 H 0.259 0.741 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 -11.559 -2.538 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.156 3.844 10 H 0.034 0.966 11 C -0.178 4.178 12 C -0.155 4.155 13 C -0.176 4.176 14 C 0.058 3.942 15 C -0.133 4.133 16 C -0.136 4.136 17 H 0.084 0.916 18 C -0.138 4.138 19 C -0.201 4.201 20 C -0.063 4.063 21 N -0.265 5.265 22 C -0.055 4.055 23 C -0.077 4.077 24 O -0.269 6.269 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.003 -11.079 -2.286 12.806 hybrid contribution 0.987 0.217 -0.736 1.250 sum -5.016 -10.862 -3.021 12.339 Atomic orbital electron populations 1.70025 1.05823 1.26286 1.47170 1.25024 0.94779 0.99003 0.93893 0.86675 0.79978 0.83631 0.78129 1.20633 1.21177 1.19881 1.21022 0.92548 0.89850 1.52997 0.92178 1.19567 0.87387 0.91622 0.85787 0.96603 1.22052 0.99996 0.95095 1.00618 1.21498 0.98272 0.98216 0.97507 1.22334 0.98255 0.98657 0.98390 1.21412 0.90987 0.87887 0.93963 1.21160 0.93523 1.02338 0.96258 1.21340 0.97330 0.94936 1.00038 0.91642 1.21132 1.00794 0.94962 0.96922 1.22083 1.02580 0.99110 0.96286 1.22068 1.00055 0.87668 0.96525 1.59913 1.12739 1.10845 1.43016 1.21783 0.95938 1.00477 0.87351 1.22237 0.85261 1.03754 0.96464 1.88835 1.56218 1.36504 1.45347 0.93107 0.92850 0.92981 0.93850 0.92607 0.92181 0.92521 0.92752 0.90756 0.92791 0.92813 0.90968 0.93206 0.90898 0.91754 0.91441 0.90022 0.88380 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.95 12.82 55.43 0.71 -24.24 16 2 C 0.08 2.23 5.39 -17.82 -0.10 2.13 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.85 8.74 -34.44 -0.30 -15.15 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 9 C 0.21 5.41 1.98 -28.07 -0.06 5.36 16 10 H 0.02 0.45 6.11 -51.25 -0.31 0.13 16 11 C -0.14 -2.99 5.40 -27.06 -0.15 -3.14 16 12 C -0.12 -2.10 5.55 -27.10 -0.15 -2.26 16 13 C -0.14 -2.49 3.99 -26.68 -0.11 -2.59 16 14 C 0.10 1.97 0.71 -91.78 -0.07 1.90 16 15 C -0.10 -1.72 4.61 -27.86 -0.13 -1.84 16 16 C -0.12 -1.72 2.74 -91.76 -0.25 -1.97 16 17 H 0.07 0.88 8.27 -51.03 -0.42 0.46 16 18 C -0.10 -1.29 5.37 -27.66 -0.15 -1.44 16 19 C -0.16 -2.07 5.04 -27.37 -0.14 -2.21 16 20 C 0.06 0.89 5.88 -3.97 -0.02 0.86 16 21 N -0.54 -9.13 4.71 -237.02 -1.12 -10.25 16 22 C 0.07 1.14 5.79 -4.26 -0.02 1.11 16 23 C 0.05 0.98 3.63 -6.02 -0.02 0.96 16 24 O -0.35 -8.88 8.78 -35.23 -0.31 -9.19 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.05 1.16 8.07 -52.12 -0.42 0.74 16 27 H 0.05 1.06 8.18 -51.65 -0.42 0.64 16 28 H 0.04 0.69 8.23 -51.34 -0.42 0.26 16 29 H 0.06 0.95 6.29 -52.04 -0.33 0.63 16 30 H 0.06 0.95 5.34 -52.96 -0.28 0.67 16 31 H 0.06 1.08 8.25 -50.69 -0.42 0.66 16 32 H 0.05 0.92 7.45 -51.40 -0.38 0.54 16 33 H 0.07 1.52 7.94 -51.35 -0.41 1.11 16 34 H 0.05 0.68 7.95 -51.19 -0.41 0.28 16 35 H 0.05 0.61 8.16 -51.82 -0.42 0.18 16 36 H 0.07 1.01 4.70 -52.30 -0.25 0.76 16 37 H 0.05 0.55 8.26 -51.09 -0.42 0.12 16 38 H 0.07 0.95 8.11 -52.00 -0.42 0.53 16 39 H 0.06 0.79 7.82 -51.80 -0.41 0.38 16 40 H 0.07 0.90 7.83 -51.88 -0.41 0.50 16 41 H 0.08 1.44 8.11 -52.14 -0.42 1.02 16 42 H 0.10 2.37 6.41 -50.43 -0.32 2.05 16 43 H 0.06 1.19 5.40 -51.39 -0.28 0.91 16 LS Contribution 304.92 15.07 4.60 4.60 Total: -1.00 -29.19 304.92 -9.91 -39.11 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.11 Total: 1.78 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -1.66 Total: -18.27 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: -0.40 Total: -34.49 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.31 Total: -9.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.19 -9.91 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717256041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.155 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds