Wall clock time and date at job start Mon Mar 30 2020 07:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99978 * 2 1 4 4 H 1.48502 * 109.46963 * 270.00102 * 3 2 1 5 5 H 1.48499 * 109.47142 * 30.00172 * 3 2 1 6 6 H 1.48498 * 109.46714 * 150.00218 * 3 2 1 7 7 C 1.37875 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00040 * 359.97438 * 7 2 1 10 10 H 1.10194 * 108.64344 * 301.27975 * 9 7 2 11 11 C 1.52635 * 109.37272 * 182.91115 * 9 7 2 12 12 C 1.52717 * 110.98307 * 190.25984 * 11 9 7 13 13 C 1.52554 * 110.02113 * 48.11687 * 12 11 9 14 14 C 1.53540 * 109.99900 * 302.09420 * 13 12 11 15 15 C 1.51935 * 108.77441 * 178.07544 * 14 13 12 16 16 C 1.51833 * 114.40262 * 104.40364 * 15 14 13 17 17 H 1.10566 * 108.24557 * 165.98891 * 16 15 14 18 18 C 1.52135 * 111.63488 * 284.78847 * 16 15 14 19 19 C 1.52031 * 114.34194 * 77.93925 * 18 16 15 20 20 C 1.52724 * 112.44141 * 41.14908 * 19 18 16 21 21 N 1.46891 * 109.33331 * 309.51111 * 20 19 18 22 22 C 1.46306 * 109.44232 * 66.72721 * 21 20 19 23 23 C 1.44476 * 114.64789 * 296.00073 * 21 20 19 24 24 O 1.42126 * 108.98097 * 60.00047 * 9 7 2 25 25 H 0.97007 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.08658 * 110.26668 * 312.15129 * 11 9 7 27 27 H 1.09487 * 108.63562 * 70.73065 * 11 9 7 28 28 H 1.10029 * 108.72986 * 167.02045 * 12 11 9 29 29 H 1.08796 * 110.51759 * 285.15017 * 12 11 9 30 30 H 1.07130 * 112.27713 * 176.04107 * 13 12 11 31 31 H 1.11146 * 107.71226 * 58.70910 * 13 12 11 32 32 H 1.09924 * 109.60964 * 341.57471 * 15 14 13 33 33 H 1.10010 * 108.54258 * 225.84300 * 15 14 13 34 34 H 1.10300 * 107.62877 * 316.53479 * 18 16 15 35 35 H 1.09189 * 109.60994 * 200.59624 * 18 16 15 36 36 H 1.08344 * 113.11423 * 276.63734 * 19 18 16 37 37 H 1.10467 * 107.61558 * 160.42932 * 19 18 16 38 38 H 1.08874 * 110.44676 * 187.40005 * 20 19 18 39 39 H 1.09232 * 107.36799 * 67.27580 * 20 19 18 40 40 H 1.09094 * 110.22601 * 48.72090 * 22 21 20 41 41 H 1.08616 * 110.77071 * 169.67516 * 22 21 20 42 42 H 1.11584 * 106.84976 * 212.71966 * 23 21 20 43 43 H 1.09942 * 108.07924 * 325.73490 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6058 -2.5333 0.8921 11 6 2.2434 -3.6566 0.0720 12 6 1.5456 -4.9916 -0.1792 13 6 0.6630 -4.8945 -1.4196 14 6 -0.3681 -3.7704 -1.2437 15 6 -1.1993 -3.6666 -2.5113 16 6 -2.5975 -4.2468 -2.3939 17 1 -3.1902 -3.8997 -3.2603 18 6 -2.5771 -5.7679 -2.4156 19 6 -2.1599 -6.4078 -1.1011 20 6 -2.7709 -5.7050 0.1093 21 7 -2.5267 -4.2601 0.0072 22 6 -3.2729 -3.7192 -1.1291 23 6 -1.1338 -3.8796 0.0557 24 8 0.4375 -2.5632 -1.1642 25 1 -0.4850 0.8401 0.0004 26 1 3.0399 -3.5155 -0.6535 27 1 2.6878 -3.6743 1.0724 28 1 2.3108 -5.7634 -0.3509 29 1 0.9642 -5.2877 0.6915 30 1 0.2081 -5.8318 -1.6689 31 1 1.3134 -4.6147 -2.2764 32 1 -0.6732 -4.1628 -3.3391 33 1 -1.2820 -2.6054 -2.7894 34 1 -1.8772 -6.0813 -3.2083 35 1 -3.5634 -6.1436 -2.6956 36 1 -1.0850 -6.4656 -0.9785 37 1 -2.5137 -7.4543 -1.1116 38 1 -2.3515 -6.1029 1.0319 39 1 -3.8485 -5.8811 0.0791 40 1 -4.3081 -4.0618 -1.0979 41 1 -3.2558 -2.6332 -1.1193 42 1 -1.0876 -2.8845 0.5585 43 1 -0.6139 -4.5731 0.7321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717256041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:35 Heat of formation + Delta-G solvation = -66.864510 kcal Electronic energy + Delta-G solvation = -22619.706869 eV Core-core repulsion = 19663.248299 eV Total energy + Delta-G solvation = -2956.458569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81558 -39.14601 -35.03747 -34.37758 -34.09342 -33.11512 -31.91647 -28.93470 -27.54889 -26.80524 -24.48641 -23.77060 -23.43861 -22.29096 -20.28508 -18.62991 -18.60169 -17.12976 -16.80837 -16.60928 -16.18948 -15.84950 -15.73146 -15.16713 -14.97595 -14.78498 -14.52432 -14.04569 -13.83710 -13.31106 -13.04581 -12.99120 -12.84653 -12.68443 -12.62390 -12.43406 -12.36189 -12.05812 -11.96822 -11.81750 -11.74045 -11.63223 -11.34860 -11.01129 -10.92271 -10.75648 -10.40076 -9.66857 -8.73081 -8.10552 -6.30297 1.38813 1.40146 1.50357 2.40939 3.01297 3.16083 3.50517 3.75388 3.80011 3.94956 3.97803 4.11125 4.13069 4.15491 4.30496 4.35863 4.40681 4.48007 4.51977 4.59833 4.69303 4.73728 4.78914 4.95996 4.99438 5.00642 5.05855 5.07800 5.10408 5.18134 5.22156 5.24342 5.29395 5.33495 5.37507 5.49868 5.57641 5.60514 5.82718 6.27152 6.35539 6.51969 6.70401 7.28056 7.45217 8.95763 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027025 B = 0.007079 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.816403 B = 3954.390495 C = 4388.591957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.027 3.973 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.216 3.784 10 H -0.015 1.015 11 C -0.136 4.136 12 C -0.113 4.113 13 C -0.129 4.129 14 C 0.094 3.906 15 C -0.093 4.093 16 C -0.111 4.111 17 H 0.082 0.918 18 C -0.098 4.098 19 C -0.162 4.162 20 C 0.063 3.937 21 N -0.560 5.560 22 C 0.071 3.929 23 C 0.076 3.924 24 O -0.387 6.387 25 H 0.258 0.742 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 -14.195 -3.275 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.076 0.924 9 C 0.160 3.840 10 H 0.002 0.998 11 C -0.174 4.174 12 C -0.151 4.151 13 C -0.166 4.166 14 C 0.053 3.947 15 C -0.131 4.131 16 C -0.131 4.131 17 H 0.100 0.900 18 C -0.135 4.135 19 C -0.200 4.200 20 C -0.064 4.064 21 N -0.282 5.282 22 C -0.057 4.057 23 C -0.053 4.053 24 O -0.307 6.307 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.543 -13.734 -3.021 15.510 hybrid contribution 1.091 1.029 -0.496 1.580 sum -5.452 -12.705 -3.517 14.265 Atomic orbital electron populations 1.70185 1.07324 1.26941 1.48134 1.25861 0.95640 1.02614 0.93493 0.85617 0.78960 0.79198 0.78168 1.20375 1.20505 1.18813 1.21480 0.92802 0.91783 1.53210 0.92440 1.19353 0.87502 0.92411 0.84766 0.99797 1.21929 0.98998 0.95786 1.00699 1.21453 0.99012 0.96690 0.97902 1.22259 0.97352 0.99060 0.97926 1.21722 0.91272 0.86812 0.94911 1.21212 0.95868 1.00367 0.95616 1.21323 0.94791 0.96946 1.00053 0.89963 1.21124 1.02703 0.92487 0.97223 1.22046 1.01825 1.00661 0.95508 1.22192 1.01704 0.85035 0.97481 1.59771 1.10817 1.13716 1.43892 1.21800 0.97613 0.98602 0.87689 1.21806 0.87230 1.00448 0.95774 1.88717 1.57253 1.39840 1.44849 0.93266 0.93524 0.92549 0.90585 0.91643 0.88945 0.93745 0.91568 0.94705 0.92082 0.90080 0.92151 0.90135 0.90421 0.89493 0.88225 0.93626 0.94659 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.67 12.82 21.45 0.27 -54.40 16 2 C 0.03 1.56 5.39 84.66 0.46 2.02 16 3 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.56 -32.71 8.74 25.60 0.22 -32.48 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.22 11.58 1.98 29.73 0.06 11.64 16 10 H -0.02 -0.90 6.11 -1.75 -0.01 -0.91 16 11 C -0.14 -5.91 5.40 30.38 0.16 -5.75 16 12 C -0.11 -3.88 5.55 30.35 0.17 -3.71 16 13 C -0.13 -4.42 3.99 30.63 0.12 -4.30 16 14 C 0.09 3.79 0.71 -11.55 -0.01 3.78 16 15 C -0.09 -3.38 4.61 29.86 0.14 -3.24 16 16 C -0.11 -3.09 2.74 -11.54 -0.03 -3.12 16 17 H 0.08 2.03 8.27 -1.54 -0.01 2.02 16 18 C -0.10 -2.08 5.37 29.99 0.16 -1.92 16 19 C -0.16 -3.42 5.04 30.18 0.15 -3.27 16 20 C 0.06 1.51 5.88 86.21 0.51 2.02 16 21 N -0.56 -18.56 4.71 -903.79 -4.25 -22.81 16 22 C 0.07 2.17 5.79 86.34 0.50 2.67 16 23 C 0.08 3.06 3.63 86.17 0.31 3.37 16 24 O -0.39 -20.71 8.78 -148.98 -1.31 -22.02 16 25 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 26 H 0.05 2.05 8.07 -2.57 -0.02 2.03 16 27 H 0.06 2.33 8.18 -2.13 -0.02 2.32 16 28 H 0.08 2.16 8.23 -1.84 -0.02 2.14 16 29 H 0.07 2.13 6.29 -2.49 -0.02 2.11 16 30 H 0.09 2.60 5.34 -3.36 -0.02 2.59 16 31 H 0.04 1.64 8.25 -1.23 -0.01 1.63 16 32 H 0.07 2.19 7.45 -1.89 -0.01 2.18 16 33 H 0.03 1.50 7.94 -1.85 -0.01 1.49 16 34 H 0.06 1.26 7.95 -1.69 -0.01 1.25 16 35 H 0.08 1.36 8.16 -2.29 -0.02 1.34 16 36 H 0.06 1.42 4.70 -2.73 -0.01 1.41 16 37 H 0.08 1.29 8.26 -1.60 -0.01 1.28 16 38 H 0.08 1.80 8.11 -2.45 -0.02 1.78 16 39 H 0.09 1.74 7.82 -2.26 -0.02 1.72 16 40 H 0.10 2.41 7.83 -2.34 -0.02 2.39 16 41 H 0.05 1.69 8.11 -2.59 -0.02 1.67 16 42 H 0.04 1.86 6.41 -0.98 -0.01 1.85 16 43 H 0.07 2.56 5.40 -1.88 -0.01 2.55 16 Total: -1.00 -68.11 304.92 0.69 -67.42 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.03 Total: 16.56 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 2.92 Total: -32.29 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -3.98 Total: -77.20 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.31 Total: -22.02 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -68.11 0.69 -67.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717256041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.551 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds