Wall clock time and date at job start Mon Mar 30 2020 07:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48496 * 109.46942 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47263 * 299.99769 * 3 2 1 6 6 H 1.48507 * 109.46974 * 60.00129 * 3 2 1 7 7 C 1.37874 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00751 * 184.84731 * 7 2 1 9 9 C 1.51012 * 119.99927 * 4.84824 * 7 2 1 10 10 H 1.09013 * 108.75504 * 335.35178 * 9 7 2 11 11 C 1.53085 * 109.02910 * 94.64230 * 9 7 2 12 12 C 1.53145 * 109.13057 * 174.89335 * 11 9 7 13 13 C 1.52907 * 108.95838 * 302.89622 * 12 11 9 14 14 C 1.54515 * 109.09677 * 59.37138 * 13 12 11 15 15 C 1.52408 * 107.03862 * 183.91613 * 14 13 12 16 16 C 1.51848 * 114.38909 * 203.77804 * 15 14 13 17 17 H 1.10485 * 108.42185 * 166.83993 * 16 15 14 18 18 C 1.52181 * 112.09268 * 286.17676 * 16 15 14 19 19 C 1.51880 * 113.46451 * 72.42100 * 18 16 15 20 20 C 1.51987 * 113.97816 * 39.38096 * 19 18 16 21 21 N 1.45422 * 113.46341 * 319.37517 * 20 19 18 22 22 C 1.46349 * 112.51383 * 55.34432 * 21 20 19 23 23 C 1.45376 * 114.99288 * 284.96849 * 21 20 19 24 24 O 1.42365 * 109.39729 * 215.04473 * 9 7 2 25 25 H 0.97003 * 120.00326 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.50705 * 54.98967 * 11 9 7 27 27 H 1.08998 * 109.51308 * 294.84612 * 11 9 7 28 28 H 1.09141 * 109.36566 * 183.14856 * 12 11 9 29 29 H 1.08939 * 109.65039 * 63.25443 * 12 11 9 30 30 H 1.08776 * 109.97352 * 178.66678 * 13 12 11 31 31 H 1.08776 * 109.97489 * 300.14093 * 13 12 11 32 32 H 1.10005 * 108.66542 * 325.90240 * 15 14 13 33 33 H 1.09991 * 108.65316 * 81.62305 * 15 14 13 34 34 H 1.09902 * 109.01104 * 194.23830 * 18 16 15 35 35 H 1.09911 * 108.93135 * 310.68092 * 18 16 15 36 36 H 1.10923 * 107.65945 * 158.56881 * 19 18 16 37 37 H 1.08811 * 110.85680 * 273.46343 * 19 18 16 38 38 H 1.09890 * 108.96070 * 197.56992 * 20 19 18 39 39 H 1.09887 * 108.94395 * 81.23451 * 20 19 18 40 40 H 1.08833 * 110.10496 * 53.39677 * 22 21 20 41 41 H 1.08796 * 110.14469 * 174.89770 * 22 21 20 42 42 H 1.09664 * 109.28599 * 311.53626 * 23 21 20 43 43 H 1.10234 * 108.68684 * 195.80793 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0796 9 6 1.2535 -2.4995 -0.1094 10 1 0.2367 -2.3506 0.2542 11 6 1.2121 -2.9294 -1.5781 12 6 0.5641 -4.3134 -1.6779 13 6 1.3519 -5.2946 -0.8092 14 6 1.3392 -4.7974 0.6538 15 6 2.2155 -5.7510 1.4572 16 6 1.8976 -5.7947 2.9414 17 1 2.4095 -6.6688 3.3825 18 6 2.3794 -4.5467 3.6669 19 6 1.5513 -3.3111 3.3598 20 6 0.0583 -3.5773 3.2596 21 7 -0.2641 -4.8138 2.5654 22 6 0.3945 -5.9780 3.1594 23 6 -0.1069 -4.7662 1.1210 24 8 1.9124 -3.4912 0.6712 25 1 -0.4851 0.8400 -0.0004 26 1 2.2269 -2.9726 -1.9734 27 1 0.6276 -2.2101 -2.1516 28 1 0.5833 -4.6479 -2.7166 29 1 -0.4685 -4.2600 -1.3349 30 1 0.8912 -6.2791 -0.8494 31 1 2.3829 -5.3490 -1.1515 32 1 2.1117 -6.7625 1.0375 33 1 3.2675 -5.4596 1.3229 34 1 2.3607 -4.7325 4.7499 35 1 3.4261 -4.3558 3.3914 36 1 1.7071 -2.5876 4.1861 37 1 1.9169 -2.8124 2.4645 38 1 -0.4202 -2.7364 2.7387 39 1 -0.3669 -3.6102 4.2724 40 1 0.1790 -6.0265 4.2250 41 1 0.0579 -6.8893 2.6695 42 1 -0.6008 -3.8676 0.7323 43 1 -0.6351 -5.6272 0.6797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717256042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:40 Heat of formation + Delta-G solvation = -59.419392 kcal Electronic energy + Delta-G solvation = -22821.218443 eV Core-core repulsion = 19865.082718 eV Total energy + Delta-G solvation = -2956.135725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38239 -37.44846 -33.46417 -32.93744 -32.59241 -31.77605 -30.04924 -27.12081 -26.09721 -25.06392 -22.94396 -22.08320 -21.97859 -20.91045 -18.54845 -17.56708 -16.55894 -15.82740 -15.08645 -14.62386 -14.54232 -14.34453 -14.08745 -13.97242 -13.50371 -13.24199 -12.86849 -12.54408 -12.15785 -11.89999 -11.54938 -11.52547 -11.29620 -11.09160 -10.97096 -10.84457 -10.82877 -10.55837 -10.53139 -10.31932 -10.09128 -10.04166 -9.85251 -9.41412 -9.32843 -8.74828 -8.61616 -8.01652 -7.31996 -6.12143 -4.15328 3.25423 3.33744 3.38822 4.31305 4.47931 4.75947 5.01573 5.11492 5.20139 5.32137 5.44305 5.52592 5.62261 5.67767 5.74560 5.79650 5.83380 5.86218 5.96529 6.00972 6.11047 6.13889 6.29956 6.34685 6.36572 6.38990 6.43543 6.52005 6.59595 6.64888 6.72958 6.79291 6.81463 7.01195 7.07119 7.20358 7.46575 7.68801 7.74402 7.80748 7.84434 8.25510 8.79764 9.07427 9.50950 10.95952 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.008356 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.185273 B = 3350.129687 C = 3936.523673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.202 3.798 10 H 0.051 0.949 11 C -0.135 4.135 12 C -0.124 4.124 13 C -0.139 4.139 14 C 0.099 3.901 15 C -0.093 4.093 16 C -0.115 4.115 17 H 0.059 0.941 18 C -0.092 4.092 19 C -0.165 4.165 20 C 0.082 3.918 21 N -0.551 5.551 22 C 0.072 3.928 23 C 0.050 3.950 24 O -0.371 6.371 25 H 0.263 0.737 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -10.814 3.566 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.147 3.853 10 H 0.069 0.931 11 C -0.173 4.173 12 C -0.162 4.162 13 C -0.178 4.178 14 C 0.057 3.943 15 C -0.130 4.130 16 C -0.135 4.135 17 H 0.078 0.922 18 C -0.130 4.130 19 C -0.204 4.204 20 C -0.046 4.046 21 N -0.271 5.271 22 C -0.056 4.056 23 C -0.078 4.078 24 O -0.292 6.292 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.205 -10.677 3.742 11.315 hybrid contribution 1.066 0.975 -0.408 1.501 sum 1.271 -9.702 3.334 10.337 Atomic orbital electron populations 1.69922 1.05903 1.26899 1.50054 1.24935 0.94897 0.99279 0.94507 0.86439 0.80202 0.83174 0.77632 1.19588 1.20907 1.20889 1.21019 0.93654 0.88957 1.50264 0.92222 1.19917 0.95371 0.84726 0.85327 0.93125 1.22247 0.99201 0.93734 1.02117 1.21646 0.99287 0.97145 0.98113 1.22444 1.00529 0.97984 0.96821 1.21581 0.93242 0.86447 0.93057 1.21291 1.00384 0.97609 0.93730 1.21354 0.98382 0.98090 0.95710 0.92244 1.21081 0.99533 0.94524 0.97848 1.22058 0.96176 0.96839 1.05292 1.21471 0.94528 0.91017 0.97571 1.59305 1.60603 1.03678 1.03536 1.21825 0.91134 0.93347 0.99303 1.22259 0.95482 1.03237 0.86823 1.87695 1.55301 1.16553 1.69607 0.92727 0.93390 0.92163 0.93598 0.92464 0.92846 0.91992 0.92226 0.91553 0.94013 0.92776 0.94091 0.86504 0.90786 0.92925 0.91201 0.91318 0.89609 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 12.74 55.43 0.71 -24.22 16 2 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -13.64 8.67 -34.29 -0.30 -13.94 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.20 4.95 2.42 -27.69 -0.07 4.89 16 10 H 0.05 1.37 5.47 -51.92 -0.28 1.09 16 11 C -0.13 -3.00 5.40 -26.61 -0.14 -3.14 16 12 C -0.12 -2.28 5.70 -26.70 -0.15 -2.43 16 13 C -0.14 -2.36 4.41 -25.98 -0.11 -2.48 16 14 C 0.10 1.79 0.57 -90.64 -0.05 1.74 16 15 C -0.09 -1.46 4.41 -27.62 -0.12 -1.58 16 16 C -0.12 -1.69 2.78 -91.63 -0.25 -1.94 16 17 H 0.06 0.75 8.26 -51.08 -0.42 0.33 16 18 C -0.09 -1.47 5.35 -27.72 -0.15 -1.62 16 19 C -0.17 -3.07 4.95 -27.82 -0.14 -3.21 16 20 C 0.08 1.49 5.75 -5.14 -0.03 1.46 16 21 N -0.55 -9.38 4.62 -237.37 -1.10 -10.48 16 22 C 0.07 1.03 5.75 -4.13 -0.02 1.01 16 23 C 0.05 0.90 3.79 -5.16 -0.02 0.88 16 24 O -0.37 -8.26 6.27 -35.23 -0.22 -8.48 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.05 0.76 8.15 -51.85 -0.42 0.33 16 29 H 0.06 1.05 6.85 -51.96 -0.36 0.69 16 30 H 0.05 0.78 7.89 -52.06 -0.41 0.37 16 31 H 0.06 1.07 8.11 -52.05 -0.42 0.65 16 32 H 0.06 0.82 7.80 -51.36 -0.40 0.42 16 33 H 0.07 1.11 8.07 -51.37 -0.41 0.70 16 34 H 0.04 0.59 8.22 -51.42 -0.42 0.17 16 35 H 0.05 0.89 8.13 -51.41 -0.42 0.47 16 36 H 0.04 0.73 8.29 -50.82 -0.42 0.31 16 37 H 0.12 2.64 5.10 -52.04 -0.27 2.37 16 38 H 0.07 1.54 8.06 -51.42 -0.41 1.13 16 39 H 0.05 0.86 8.22 -51.42 -0.42 0.44 16 40 H 0.07 0.92 8.12 -52.02 -0.42 0.50 16 41 H 0.07 0.90 8.12 -52.04 -0.42 0.47 16 42 H 0.09 1.79 5.21 -51.55 -0.27 1.52 16 43 H 0.06 1.01 7.80 -51.22 -0.40 0.61 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -27.24 308.20 -10.05 -37.29 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.40 Total: 3.81 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.66 Total: -18.67 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.39 Total: -34.69 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.22 Total: -8.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.24 -10.05 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717256042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.134 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds