Wall clock time and date at job start Mon Mar 30 2020 07:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48496 * 109.46942 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47263 * 299.99769 * 3 2 1 6 6 H 1.48507 * 109.46974 * 60.00129 * 3 2 1 7 7 C 1.37874 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00751 * 184.84731 * 7 2 1 9 9 C 1.51012 * 119.99927 * 4.84824 * 7 2 1 10 10 H 1.09013 * 108.75504 * 335.35178 * 9 7 2 11 11 C 1.53085 * 109.02910 * 94.64230 * 9 7 2 12 12 C 1.53145 * 109.13057 * 174.89335 * 11 9 7 13 13 C 1.52907 * 108.95838 * 302.89622 * 12 11 9 14 14 C 1.54515 * 109.09677 * 59.37138 * 13 12 11 15 15 C 1.52408 * 107.03862 * 183.91613 * 14 13 12 16 16 C 1.51848 * 114.38909 * 203.77804 * 15 14 13 17 17 H 1.10485 * 108.42185 * 166.83993 * 16 15 14 18 18 C 1.52181 * 112.09268 * 286.17676 * 16 15 14 19 19 C 1.51880 * 113.46451 * 72.42100 * 18 16 15 20 20 C 1.51987 * 113.97816 * 39.38096 * 19 18 16 21 21 N 1.45422 * 113.46341 * 319.37517 * 20 19 18 22 22 C 1.46349 * 112.51383 * 55.34432 * 21 20 19 23 23 C 1.45376 * 114.99288 * 284.96849 * 21 20 19 24 24 O 1.42365 * 109.39729 * 215.04473 * 9 7 2 25 25 H 0.97003 * 120.00326 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.50705 * 54.98967 * 11 9 7 27 27 H 1.08998 * 109.51308 * 294.84612 * 11 9 7 28 28 H 1.09141 * 109.36566 * 183.14856 * 12 11 9 29 29 H 1.08939 * 109.65039 * 63.25443 * 12 11 9 30 30 H 1.08776 * 109.97352 * 178.66678 * 13 12 11 31 31 H 1.08776 * 109.97489 * 300.14093 * 13 12 11 32 32 H 1.10005 * 108.66542 * 325.90240 * 15 14 13 33 33 H 1.09991 * 108.65316 * 81.62305 * 15 14 13 34 34 H 1.09902 * 109.01104 * 194.23830 * 18 16 15 35 35 H 1.09911 * 108.93135 * 310.68092 * 18 16 15 36 36 H 1.10923 * 107.65945 * 158.56881 * 19 18 16 37 37 H 1.08811 * 110.85680 * 273.46343 * 19 18 16 38 38 H 1.09890 * 108.96070 * 197.56992 * 20 19 18 39 39 H 1.09887 * 108.94395 * 81.23451 * 20 19 18 40 40 H 1.08833 * 110.10496 * 53.39677 * 22 21 20 41 41 H 1.08796 * 110.14469 * 174.89770 * 22 21 20 42 42 H 1.09664 * 109.28599 * 311.53626 * 23 21 20 43 43 H 1.10234 * 108.68684 * 195.80793 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0796 9 6 1.2535 -2.4995 -0.1094 10 1 0.2367 -2.3506 0.2542 11 6 1.2121 -2.9294 -1.5781 12 6 0.5641 -4.3134 -1.6779 13 6 1.3519 -5.2946 -0.8092 14 6 1.3392 -4.7974 0.6538 15 6 2.2155 -5.7510 1.4572 16 6 1.8976 -5.7947 2.9414 17 1 2.4095 -6.6688 3.3825 18 6 2.3794 -4.5467 3.6669 19 6 1.5513 -3.3111 3.3598 20 6 0.0583 -3.5773 3.2596 21 7 -0.2641 -4.8138 2.5654 22 6 0.3945 -5.9780 3.1594 23 6 -0.1069 -4.7662 1.1210 24 8 1.9124 -3.4912 0.6712 25 1 -0.4851 0.8400 -0.0004 26 1 2.2269 -2.9726 -1.9734 27 1 0.6276 -2.2101 -2.1516 28 1 0.5833 -4.6479 -2.7166 29 1 -0.4685 -4.2600 -1.3349 30 1 0.8912 -6.2791 -0.8494 31 1 2.3829 -5.3490 -1.1515 32 1 2.1117 -6.7625 1.0375 33 1 3.2675 -5.4596 1.3229 34 1 2.3607 -4.7325 4.7499 35 1 3.4261 -4.3558 3.3914 36 1 1.7071 -2.5876 4.1861 37 1 1.9169 -2.8124 2.4645 38 1 -0.4202 -2.7364 2.7387 39 1 -0.3669 -3.6102 4.2724 40 1 0.1790 -6.0265 4.2250 41 1 0.0579 -6.8893 2.6695 42 1 -0.6008 -3.8676 0.7323 43 1 -0.6351 -5.6272 0.6797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717256042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:39 Heat of formation + Delta-G solvation = -75.388838 kcal Electronic energy + Delta-G solvation = -22821.910930 eV Core-core repulsion = 19865.082718 eV Total energy + Delta-G solvation = -2956.828212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79162 -38.98630 -35.29297 -34.41759 -34.12823 -33.41713 -31.56171 -28.81256 -27.48810 -26.77659 -24.36736 -23.69300 -23.47166 -22.41394 -20.09660 -18.90855 -18.60780 -17.42604 -16.82705 -16.20787 -15.94600 -15.75575 -15.56279 -15.47126 -15.02631 -14.71425 -14.52000 -13.98602 -13.80391 -13.35752 -13.10720 -12.95078 -12.89121 -12.87833 -12.61563 -12.43323 -12.27232 -12.09650 -12.05572 -11.97155 -11.70895 -11.57281 -11.27723 -10.98144 -10.80261 -10.76900 -10.47078 -9.71332 -8.71383 -8.22058 -6.32460 1.35128 1.36722 1.49216 2.34286 2.97699 3.15743 3.39711 3.73845 3.86695 4.01175 4.07129 4.11723 4.20764 4.25230 4.36344 4.43823 4.49478 4.52534 4.56828 4.65971 4.73595 4.87476 4.87662 4.93143 4.97416 4.98782 5.05580 5.13285 5.21158 5.22636 5.29987 5.31487 5.36977 5.43611 5.44759 5.51927 5.61667 5.77873 5.87635 6.22895 6.42888 6.43871 6.80011 7.16443 7.42284 8.85692 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.008356 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.185273 B = 3350.129687 C = 3936.523673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.044 0.956 9 C 0.214 3.786 10 H 0.018 0.982 11 C -0.130 4.130 12 C -0.118 4.118 13 C -0.134 4.134 14 C 0.086 3.914 15 C -0.092 4.092 16 C -0.115 4.115 17 H 0.096 0.904 18 C -0.091 4.091 19 C -0.161 4.161 20 C 0.090 3.910 21 N -0.555 5.555 22 C 0.072 3.928 23 C 0.057 3.943 24 O -0.386 6.386 25 H 0.265 0.735 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 -13.613 4.262 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.062 0.938 9 C 0.158 3.842 10 H 0.035 0.965 11 C -0.169 4.169 12 C -0.155 4.155 13 C -0.172 4.172 14 C 0.045 3.955 15 C -0.129 4.129 16 C -0.135 4.135 17 H 0.114 0.886 18 C -0.128 4.128 19 C -0.200 4.200 20 C -0.038 4.038 21 N -0.276 5.276 22 C -0.055 4.055 23 C -0.072 4.072 24 O -0.307 6.307 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.657 -13.495 4.438 14.221 hybrid contribution 0.925 1.815 -0.589 2.120 sum 1.581 -11.680 3.849 12.399 Atomic orbital electron populations 1.70038 1.07147 1.27664 1.50902 1.25675 0.95689 1.02376 0.94141 0.85504 0.78933 0.79262 0.77959 1.19369 1.19947 1.20335 1.21299 0.93118 0.91055 1.50578 0.93775 1.19511 0.93188 0.84899 0.86592 0.96467 1.22074 0.98779 0.95979 1.00046 1.21575 0.98874 0.94923 1.00161 1.22432 1.00498 0.99057 0.95212 1.21976 0.93825 0.84895 0.94827 1.21340 0.98769 0.98236 0.94600 1.21391 0.99035 0.98320 0.94749 0.88632 1.21068 0.98175 0.93949 0.99656 1.21951 0.96890 0.98295 1.02855 1.21313 0.93894 0.90581 0.98031 1.59331 1.61230 1.04009 1.03023 1.22023 0.90442 0.92573 1.00465 1.22146 0.95229 1.02172 0.87633 1.87657 1.55415 1.18198 1.69382 0.92606 0.94023 0.94685 0.91116 0.92780 0.89123 0.92097 0.88862 0.92924 0.91582 0.93853 0.94450 0.90980 0.95276 0.90822 0.89462 0.88861 0.93739 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.09 12.74 21.45 0.27 -53.81 16 2 C 0.02 1.17 5.45 84.65 0.46 1.63 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.52 -30.07 8.67 25.70 0.22 -29.85 16 8 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.21 11.10 2.42 29.98 0.07 11.18 16 10 H 0.02 1.02 5.47 -2.38 -0.01 1.01 16 11 C -0.13 -6.03 5.40 30.67 0.17 -5.87 16 12 C -0.12 -4.24 5.70 30.61 0.17 -4.06 16 13 C -0.13 -4.21 4.41 31.08 0.14 -4.08 16 14 C 0.09 3.02 0.57 -10.81 -0.01 3.01 16 15 C -0.09 -2.62 4.41 30.02 0.13 -2.49 16 16 C -0.12 -2.92 2.78 -11.45 -0.03 -2.95 16 17 H 0.10 1.85 8.26 -1.59 -0.01 1.84 16 18 C -0.09 -2.73 5.35 29.95 0.16 -2.57 16 19 C -0.16 -6.10 4.95 29.89 0.15 -5.95 16 20 C 0.09 3.33 5.75 86.25 0.50 3.82 16 21 N -0.56 -18.12 4.62 -904.89 -4.18 -22.30 16 22 C 0.07 1.76 5.75 86.41 0.50 2.25 16 23 C 0.06 1.99 3.79 86.26 0.33 2.32 16 24 O -0.39 -17.77 6.27 -148.98 -0.93 -18.71 16 25 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.19 8.15 -2.31 -0.02 2.17 16 29 H 0.05 1.98 6.85 -2.42 -0.02 1.96 16 30 H 0.09 2.23 7.89 -2.51 -0.02 2.21 16 31 H 0.06 1.95 8.11 -2.51 -0.02 1.93 16 32 H 0.09 2.07 7.80 -1.85 -0.01 2.05 16 33 H 0.05 1.65 8.07 -1.86 -0.01 1.64 16 34 H 0.07 1.67 8.22 -1.91 -0.02 1.66 16 35 H 0.04 1.38 8.13 -1.90 -0.02 1.36 16 36 H 0.04 1.37 8.29 -1.35 -0.01 1.36 16 37 H 0.07 3.45 5.10 -2.49 -0.01 3.43 16 38 H 0.03 1.30 8.06 -1.91 -0.02 1.28 16 39 H 0.07 2.38 8.22 -1.91 -0.02 2.36 16 40 H 0.09 1.88 8.12 -2.48 -0.02 1.86 16 41 H 0.09 1.89 8.12 -2.49 -0.02 1.87 16 42 H 0.04 1.94 5.21 -2.03 -0.01 1.93 16 43 H 0.09 2.59 7.80 -1.73 -0.01 2.57 16 Total: -1.00 -63.37 308.20 1.15 -62.21 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.01 Total: 19.38 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 2.96 Total: -33.59 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -3.90 Total: -76.11 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.93 Total: -18.71 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -63.37 1.15 -62.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717256042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.176 kcal (2) G-P(sol) polarization free energy of solvation -63.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds