Wall clock time and date at job start Mon Mar 30 2020 07:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48501 * 109.46972 * 264.80612 * 3 2 1 5 5 H 1.48502 * 109.47121 * 24.80308 * 3 2 1 6 6 H 1.48497 * 109.47295 * 144.80196 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00110 * 5.37919 * 7 2 1 9 9 C 1.50744 * 119.99971 * 185.38183 * 7 2 1 10 10 H 1.09131 * 109.19323 * 335.44918 * 9 7 2 11 11 C 1.52884 * 109.37487 * 95.06751 * 9 7 2 12 12 C 1.53073 * 109.76196 * 175.84158 * 11 9 7 13 13 C 1.53026 * 109.49459 * 306.39526 * 12 11 9 14 14 C 1.53163 * 110.50879 * 56.29373 * 13 12 11 15 15 C 1.51554 * 111.82526 * 58.30778 * 14 13 12 16 16 C 1.51453 * 116.01829 * 93.95627 * 15 14 13 17 17 H 1.10880 * 107.73090 * 158.10574 * 16 15 14 18 18 C 1.52142 * 111.92039 * 276.33547 * 16 15 14 19 19 C 1.51059 * 114.21495 * 81.93542 * 18 16 15 20 20 C 1.50397 * 118.92293 * 12.29570 * 19 18 16 21 21 N 1.45483 * 118.96868 * 356.42654 * 20 19 18 22 22 C 1.46731 * 113.79919 * 27.98470 * 21 20 19 23 23 C 1.46486 * 112.54080 * 262.26400 * 21 20 19 24 24 O 1.42406 * 109.40396 * 215.23911 * 9 7 2 25 25 H 0.97006 * 119.99639 * 0.02562 * 1 2 3 26 26 H 1.09130 * 109.64386 * 296.03447 * 11 9 7 27 27 H 1.08989 * 109.60885 * 55.65514 * 11 9 7 28 28 H 1.08678 * 109.87340 * 67.82260 * 12 11 9 29 29 H 1.09480 * 109.09681 * 186.92202 * 12 11 9 30 30 H 1.08215 * 110.03398 * 179.10542 * 13 12 11 31 31 H 1.09860 * 108.43062 * 297.81036 * 13 12 11 32 32 H 1.10740 * 108.19520 * 215.77011 * 15 14 13 33 33 H 1.10160 * 109.64567 * 330.37136 * 15 14 13 34 34 H 1.10036 * 108.79703 * 319.12359 * 18 16 15 35 35 H 1.10378 * 108.73114 * 204.18995 * 18 16 15 36 36 H 1.10594 * 108.71708 * 246.54160 * 19 18 16 37 37 H 1.11198 * 107.83809 * 135.30177 * 19 18 16 38 38 H 1.10707 * 108.76971 * 232.36986 * 20 19 18 39 39 H 1.10938 * 108.26219 * 119.54300 * 20 19 18 40 40 H 1.08976 * 109.80991 * 60.36740 * 22 21 20 41 41 H 1.09036 * 109.53067 * 180.64252 * 22 21 20 42 42 H 1.09652 * 108.83112 * 305.63871 * 23 21 20 43 43 H 1.09784 * 108.43190 * 188.96375 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6064 1.9830 -1.3943 5 1 1.3960 2.6819 0.5873 6 1 3.4875 1.4743 0.8070 7 6 2.0045 -1.1940 0.0005 8 1 1.4680 -2.1274 -0.0867 9 6 3.5069 -1.1969 0.1230 10 1 3.8975 -0.2412 -0.2307 11 6 3.8960 -1.3918 1.5886 12 6 5.4181 -1.4998 1.7101 13 6 5.9292 -2.5927 0.7688 14 6 5.4896 -2.3098 -0.6708 15 6 5.9881 -0.9641 -1.1581 16 6 7.2991 -0.9761 -1.9163 17 1 7.3401 -0.0565 -2.5345 18 6 8.4974 -0.9577 -0.9791 19 6 8.8681 -2.3114 -0.4207 20 6 8.2488 -3.5417 -1.0246 21 7 7.2534 -3.3868 -2.0743 22 6 7.4131 -2.1615 -2.8655 23 6 5.8825 -3.4738 -1.5654 24 8 4.0435 -2.2576 -0.6611 25 1 -0.4850 0.8401 -0.0004 26 1 3.5447 -0.5428 2.1774 27 1 3.4366 -2.3033 1.9708 28 1 5.8767 -0.5450 1.4668 29 1 5.6774 -1.7618 2.7409 30 1 7.0068 -2.6657 0.8362 31 1 5.4920 -3.5513 1.0798 32 1 5.2119 -0.5248 -1.8146 33 1 6.0792 -0.2722 -0.3058 34 1 8.2906 -0.2612 -0.1527 35 1 9.3636 -0.5379 -1.5195 36 1 8.6830 -2.3084 0.6696 37 1 9.9728 -2.4178 -0.4904 38 1 7.7991 -4.1482 -0.2149 39 1 9.0629 -4.1794 -1.4262 40 1 8.3876 -2.1611 -3.3532 41 1 6.6282 -2.1103 -3.6206 42 1 5.7697 -4.4130 -1.0109 43 1 5.1962 -3.5108 -2.4214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717256043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:44 Heat of formation + Delta-G solvation = -52.739577 kcal Electronic energy + Delta-G solvation = -22513.932476 eV Core-core repulsion = 19558.086410 eV Total energy + Delta-G solvation = -2955.846066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73756 -37.82699 -33.60850 -33.06238 -32.79473 -32.12096 -30.83104 -27.58632 -26.46951 -25.20359 -23.63302 -22.42839 -21.94658 -20.97866 -18.91651 -17.31806 -17.05474 -15.93868 -15.53396 -15.24101 -14.97404 -14.94133 -14.35580 -13.93235 -13.80400 -13.37022 -13.14632 -12.87076 -12.63757 -12.19657 -12.12113 -11.87547 -11.45914 -11.20222 -11.15684 -11.02274 -10.96206 -10.91738 -10.69166 -10.49815 -10.28913 -10.05812 -9.93296 -9.85986 -9.75977 -8.82643 -8.73606 -8.23616 -8.00007 -6.16132 -4.16116 3.20840 3.29017 3.29236 4.07184 4.32151 4.49368 4.60110 4.76199 4.82110 4.94943 5.07736 5.16542 5.22752 5.29499 5.33008 5.44360 5.52069 5.56166 5.65607 5.72596 5.81240 5.86752 5.88113 5.95318 6.01931 6.11937 6.15908 6.21515 6.23588 6.29616 6.40575 6.41090 6.45520 6.56975 6.70379 6.82325 6.83544 7.17608 7.29429 7.37214 7.67869 8.14715 8.69481 8.96220 9.45862 10.96762 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.006909 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.723204 B = 4051.924378 C = 4138.722397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.872 3.128 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.190 3.810 10 H 0.017 0.983 11 C -0.141 4.141 12 C -0.124 4.124 13 C -0.142 4.142 14 C 0.097 3.903 15 C -0.135 4.135 16 C -0.113 4.113 17 H 0.068 0.932 18 C -0.103 4.103 19 C -0.136 4.136 20 C 0.061 3.939 21 N -0.521 5.521 22 C 0.063 3.937 23 C 0.066 3.934 24 O -0.372 6.372 25 H 0.266 0.734 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.168 -2.821 -1.426 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.698 3.302 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.542 4.542 8 H 0.098 0.902 9 C 0.133 3.867 10 H 0.035 0.965 11 C -0.180 4.180 12 C -0.161 4.161 13 C -0.179 4.179 14 C 0.055 3.945 15 C -0.173 4.173 16 C -0.133 4.133 17 H 0.086 0.914 18 C -0.141 4.141 19 C -0.174 4.174 20 C -0.068 4.068 21 N -0.242 5.242 22 C -0.065 4.065 23 C -0.062 4.062 24 O -0.291 6.291 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.944 -3.234 -1.807 18.323 hybrid contribution 0.401 2.007 0.950 2.257 sum 18.346 -1.227 -0.857 18.407 Atomic orbital electron populations 1.69874 1.06109 1.27127 1.49819 1.24916 0.94752 0.98632 0.94296 0.86949 0.80283 0.83928 0.78993 1.19894 1.21137 1.19037 1.20815 0.87958 0.95116 1.50307 0.90179 1.19990 0.94338 0.86151 0.86214 0.96528 1.22330 0.92509 1.01915 1.01213 1.21656 0.98248 0.98052 0.98186 1.22326 1.00590 0.99476 0.95509 1.21519 0.84706 0.94231 0.94024 1.21877 0.96450 0.98074 1.00909 1.21138 0.94537 1.00211 0.97369 0.91364 1.21150 0.97492 0.96158 0.99260 1.21389 1.00430 0.95104 1.00524 1.21592 0.95371 0.95849 0.93947 1.61665 1.02635 1.36703 1.23226 1.21911 1.02241 0.87162 0.95206 1.21993 0.88747 0.96508 0.98924 1.88403 1.15819 1.53853 1.71033 0.92351 0.92479 0.92010 0.92939 0.93181 0.91282 0.91940 0.91093 0.91632 0.92351 0.92619 0.92220 0.92790 0.91763 0.92031 0.90655 0.90258 0.90572 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.96 55.43 0.77 -26.39 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 21.40 27.00 -169.99 -4.59 16.81 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.21 6.79 56.52 0.38 -5.82 16 7 C -0.50 -14.57 9.22 -34.42 -0.32 -14.89 16 8 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 9 C 0.19 4.63 1.93 -27.92 -0.05 4.57 16 10 H 0.02 0.42 3.52 -51.86 -0.18 0.24 16 11 C -0.14 -3.07 5.40 -26.75 -0.14 -3.21 16 12 C -0.12 -2.17 5.66 -26.68 -0.15 -2.33 16 13 C -0.14 -2.30 4.19 -26.63 -0.11 -2.41 16 14 C 0.10 1.70 0.77 -91.79 -0.07 1.63 16 15 C -0.14 -2.27 3.24 -28.24 -0.09 -2.36 16 16 C -0.11 -1.48 2.63 -92.20 -0.24 -1.72 16 17 H 0.07 0.84 8.29 -50.85 -0.42 0.42 16 18 C -0.10 -1.18 5.39 -28.14 -0.15 -1.33 16 19 C -0.14 -1.45 4.79 -29.01 -0.14 -1.59 16 20 C 0.06 0.70 4.95 -5.89 -0.03 0.67 16 21 N -0.52 -6.90 4.95 -236.68 -1.17 -8.07 16 22 C 0.06 0.78 5.69 -4.28 -0.02 0.76 16 23 C 0.07 1.04 4.62 -4.57 -0.02 1.01 16 24 O -0.37 -8.52 9.51 -35.23 -0.34 -8.85 16 25 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.06 1.26 8.15 -51.86 -0.42 0.84 16 27 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.05 0.90 6.44 -52.11 -0.34 0.57 16 29 H 0.05 0.78 8.18 -51.66 -0.42 0.36 16 30 H 0.07 0.96 3.44 -52.37 -0.18 0.78 16 31 H 0.06 1.04 8.05 -51.44 -0.41 0.63 16 32 H 0.07 1.35 7.47 -50.93 -0.38 0.97 16 33 H 0.07 1.14 5.30 -51.27 -0.27 0.87 16 34 H 0.06 0.70 7.84 -51.34 -0.40 0.29 16 35 H 0.06 0.55 8.26 -51.14 -0.42 0.13 16 36 H 0.06 0.65 6.66 -51.02 -0.34 0.31 16 37 H 0.05 0.49 8.31 -50.66 -0.42 0.07 16 38 H 0.06 0.75 6.53 -50.95 -0.33 0.42 16 39 H 0.06 0.64 8.30 -50.81 -0.42 0.22 16 40 H 0.08 0.82 8.14 -51.94 -0.42 0.39 16 41 H 0.08 1.02 8.04 -51.91 -0.42 0.60 16 42 H 0.08 1.15 7.60 -51.56 -0.39 0.76 16 43 H 0.08 1.41 8.06 -51.48 -0.41 0.99 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -29.99 301.45 -9.44 -39.43 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.02 Total: 1.60 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.65 Total: -19.06 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: -0.40 Total: -34.46 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.34 Total: -8.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.81 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.99 -9.44 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717256043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.314 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds