Wall clock time and date at job start Mon Mar 30 2020 07:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48501 * 109.46972 * 264.80612 * 3 2 1 5 5 H 1.48502 * 109.47121 * 24.80308 * 3 2 1 6 6 H 1.48497 * 109.47295 * 144.80196 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00110 * 5.37919 * 7 2 1 9 9 C 1.50744 * 119.99971 * 185.38183 * 7 2 1 10 10 H 1.09131 * 109.19323 * 335.44918 * 9 7 2 11 11 C 1.52884 * 109.37487 * 95.06751 * 9 7 2 12 12 C 1.53073 * 109.76196 * 175.84158 * 11 9 7 13 13 C 1.53026 * 109.49459 * 306.39526 * 12 11 9 14 14 C 1.53163 * 110.50879 * 56.29373 * 13 12 11 15 15 C 1.51554 * 111.82526 * 58.30778 * 14 13 12 16 16 C 1.51453 * 116.01829 * 93.95627 * 15 14 13 17 17 H 1.10880 * 107.73090 * 158.10574 * 16 15 14 18 18 C 1.52142 * 111.92039 * 276.33547 * 16 15 14 19 19 C 1.51059 * 114.21495 * 81.93542 * 18 16 15 20 20 C 1.50397 * 118.92293 * 12.29570 * 19 18 16 21 21 N 1.45483 * 118.96868 * 356.42654 * 20 19 18 22 22 C 1.46731 * 113.79919 * 27.98470 * 21 20 19 23 23 C 1.46486 * 112.54080 * 262.26400 * 21 20 19 24 24 O 1.42406 * 109.40396 * 215.23911 * 9 7 2 25 25 H 0.97006 * 119.99639 * 0.02562 * 1 2 3 26 26 H 1.09130 * 109.64386 * 296.03447 * 11 9 7 27 27 H 1.08989 * 109.60885 * 55.65514 * 11 9 7 28 28 H 1.08678 * 109.87340 * 67.82260 * 12 11 9 29 29 H 1.09480 * 109.09681 * 186.92202 * 12 11 9 30 30 H 1.08215 * 110.03398 * 179.10542 * 13 12 11 31 31 H 1.09860 * 108.43062 * 297.81036 * 13 12 11 32 32 H 1.10740 * 108.19520 * 215.77011 * 15 14 13 33 33 H 1.10160 * 109.64567 * 330.37136 * 15 14 13 34 34 H 1.10036 * 108.79703 * 319.12359 * 18 16 15 35 35 H 1.10378 * 108.73114 * 204.18995 * 18 16 15 36 36 H 1.10594 * 108.71708 * 246.54160 * 19 18 16 37 37 H 1.11198 * 107.83809 * 135.30177 * 19 18 16 38 38 H 1.10707 * 108.76971 * 232.36986 * 20 19 18 39 39 H 1.10938 * 108.26219 * 119.54300 * 20 19 18 40 40 H 1.08976 * 109.80991 * 60.36740 * 22 21 20 41 41 H 1.09036 * 109.53067 * 180.64252 * 22 21 20 42 42 H 1.09652 * 108.83112 * 305.63871 * 23 21 20 43 43 H 1.09784 * 108.43190 * 188.96375 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6064 1.9830 -1.3943 5 1 1.3960 2.6819 0.5873 6 1 3.4875 1.4743 0.8070 7 6 2.0045 -1.1940 0.0005 8 1 1.4680 -2.1274 -0.0867 9 6 3.5069 -1.1969 0.1230 10 1 3.8975 -0.2412 -0.2307 11 6 3.8960 -1.3918 1.5886 12 6 5.4181 -1.4998 1.7101 13 6 5.9292 -2.5927 0.7688 14 6 5.4896 -2.3098 -0.6708 15 6 5.9881 -0.9641 -1.1581 16 6 7.2991 -0.9761 -1.9163 17 1 7.3401 -0.0565 -2.5345 18 6 8.4974 -0.9577 -0.9791 19 6 8.8681 -2.3114 -0.4207 20 6 8.2488 -3.5417 -1.0246 21 7 7.2534 -3.3868 -2.0743 22 6 7.4131 -2.1615 -2.8655 23 6 5.8825 -3.4738 -1.5654 24 8 4.0435 -2.2576 -0.6611 25 1 -0.4850 0.8401 -0.0004 26 1 3.5447 -0.5428 2.1774 27 1 3.4366 -2.3033 1.9708 28 1 5.8767 -0.5450 1.4668 29 1 5.6774 -1.7618 2.7409 30 1 7.0068 -2.6657 0.8362 31 1 5.4920 -3.5513 1.0798 32 1 5.2119 -0.5248 -1.8146 33 1 6.0792 -0.2722 -0.3058 34 1 8.2906 -0.2612 -0.1527 35 1 9.3636 -0.5379 -1.5195 36 1 8.6830 -2.3084 0.6696 37 1 9.9728 -2.4178 -0.4904 38 1 7.7991 -4.1482 -0.2149 39 1 9.0629 -4.1794 -1.4262 40 1 8.3876 -2.1611 -3.3532 41 1 6.6282 -2.1103 -3.6206 42 1 5.7697 -4.4130 -1.0109 43 1 5.1962 -3.5108 -2.4214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717256043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:43 Heat of formation + Delta-G solvation = -72.990114 kcal Electronic energy + Delta-G solvation = -22514.810605 eV Core-core repulsion = 19558.086410 eV Total energy + Delta-G solvation = -2956.724195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98109 -39.27024 -35.18422 -34.58139 -34.27018 -33.44840 -32.31992 -29.23859 -27.58096 -26.87676 -24.71995 -23.66896 -23.49503 -22.41613 -20.32526 -19.18136 -18.41162 -17.39071 -17.14139 -16.44635 -16.21864 -16.04036 -15.97905 -15.23331 -15.11818 -14.75518 -14.63260 -14.45252 -14.08982 -13.62144 -13.35511 -13.16289 -12.96797 -12.88507 -12.66008 -12.39862 -12.31892 -12.18049 -12.12429 -11.87327 -11.73290 -11.67562 -11.36100 -11.21944 -10.94388 -10.78586 -10.66011 -9.96526 -9.06493 -8.40728 -6.47220 1.24599 1.26354 1.37063 2.23090 2.76674 3.03311 3.28202 3.58894 3.69094 3.77370 3.85329 3.92383 4.08458 4.15705 4.18061 4.21630 4.35098 4.36368 4.41184 4.51054 4.56907 4.60800 4.67608 4.80470 4.87168 4.94948 4.97731 5.01838 5.04901 5.08451 5.17159 5.19436 5.24845 5.27214 5.33607 5.34029 5.37983 5.50693 5.64520 6.01146 6.11544 6.38667 6.59655 6.84261 7.20168 8.76598 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.006909 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.723204 B = 4051.924378 C = 4138.722397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.020 3.980 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.243 1.243 7 C -0.524 4.524 8 H 0.027 0.973 9 C 0.198 3.802 10 H 0.019 0.981 11 C -0.141 4.141 12 C -0.118 4.118 13 C -0.136 4.136 14 C 0.091 3.909 15 C -0.130 4.130 16 C -0.111 4.111 17 H 0.078 0.922 18 C -0.102 4.102 19 C -0.139 4.139 20 C 0.054 3.946 21 N -0.519 5.519 22 C 0.062 3.938 23 C 0.073 3.927 24 O -0.404 6.404 25 H 0.271 0.729 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.467 -1.855 -1.018 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.167 1.167 7 C -0.562 4.562 8 H 0.045 0.955 9 C 0.141 3.859 10 H 0.036 0.964 11 C -0.179 4.179 12 C -0.155 4.155 13 C -0.173 4.173 14 C 0.050 3.950 15 C -0.168 4.168 16 C -0.131 4.131 17 H 0.096 0.904 18 C -0.140 4.140 19 C -0.178 4.178 20 C -0.074 4.074 21 N -0.241 5.241 22 C -0.066 4.066 23 C -0.056 4.056 24 O -0.324 6.324 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.269 -2.289 -1.398 22.430 hybrid contribution -0.977 1.564 0.763 1.995 sum 21.293 -0.726 -0.636 21.315 Atomic orbital electron populations 1.70025 1.08090 1.28515 1.51240 1.25824 0.95617 1.02783 0.93576 0.85865 0.79662 0.78540 0.79762 1.19026 1.20055 1.16684 1.21085 0.90908 0.93400 1.50764 0.95485 1.19719 0.91409 0.86731 0.88031 0.96356 1.22198 0.96053 1.00878 0.98799 1.21616 0.94535 0.99124 1.00258 1.22309 1.02424 0.98667 0.93870 1.21901 0.81551 0.95716 0.95784 1.21845 0.97646 0.96879 1.00401 1.21125 0.93333 1.00983 0.97682 0.90378 1.21147 0.97119 0.96729 0.98960 1.21384 1.01967 0.94088 1.00316 1.21731 0.95254 0.96782 0.93600 1.61708 1.01386 1.37187 1.23770 1.21988 1.03257 0.86519 0.94840 1.21879 0.90221 0.95777 0.97709 1.88322 1.19760 1.53263 1.71093 0.91960 0.93077 0.93571 0.91909 0.90360 0.88057 0.92586 0.94369 0.92061 0.92607 0.90346 0.92052 0.90288 0.91949 0.90132 0.87991 0.91487 0.90374 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.02 1.21 5.47 84.65 0.46 1.68 16 3 Si 0.94 44.52 27.00 68.60 1.85 46.38 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.24 -10.57 6.79 99.48 0.68 -9.89 16 7 C -0.52 -31.98 9.22 25.61 0.24 -31.75 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 9 C 0.20 9.90 1.93 29.82 0.06 9.95 16 10 H 0.02 0.92 3.52 -2.32 -0.01 0.91 16 11 C -0.14 -6.11 5.40 30.58 0.17 -5.94 16 12 C -0.12 -3.85 5.66 30.63 0.17 -3.67 16 13 C -0.14 -4.11 4.19 30.66 0.13 -3.98 16 14 C 0.09 3.14 0.77 -11.55 -0.01 3.13 16 15 C -0.13 -4.18 3.24 29.61 0.10 -4.09 16 16 C -0.11 -2.60 2.63 -11.82 -0.03 -2.63 16 17 H 0.08 1.69 8.29 -1.37 -0.01 1.68 16 18 C -0.10 -1.86 5.39 29.68 0.16 -1.70 16 19 C -0.14 -2.29 4.79 29.12 0.14 -2.15 16 20 C 0.05 1.04 4.95 85.73 0.42 1.46 16 21 N -0.52 -12.50 4.95 -902.73 -4.47 -16.96 16 22 C 0.06 1.38 5.69 86.10 0.49 1.87 16 23 C 0.07 2.24 4.62 86.04 0.40 2.64 16 24 O -0.40 -19.19 9.51 -148.98 -1.42 -20.61 16 25 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 26 H 0.05 2.23 8.15 -2.32 -0.02 2.21 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 1.95 6.44 -2.56 -0.02 1.93 16 29 H 0.08 2.15 8.18 -2.13 -0.02 2.14 16 30 H 0.10 2.44 3.44 -2.80 -0.01 2.43 16 31 H 0.06 1.78 8.05 -1.93 -0.02 1.76 16 32 H 0.04 1.45 7.47 -1.45 -0.01 1.44 16 33 H 0.06 1.99 5.30 -1.77 -0.01 1.98 16 34 H 0.06 1.08 7.84 -1.83 -0.01 1.06 16 35 H 0.08 1.13 8.26 -1.65 -0.01 1.12 16 36 H 0.06 1.01 6.66 -1.53 -0.01 1.00 16 37 H 0.08 0.98 8.31 -1.20 -0.01 0.97 16 38 H 0.06 1.23 6.53 -1.47 -0.01 1.22 16 39 H 0.08 1.30 8.30 -1.34 -0.01 1.29 16 40 H 0.10 1.78 8.14 -2.40 -0.02 1.76 16 41 H 0.07 1.65 8.04 -2.37 -0.02 1.63 16 42 H 0.08 2.33 7.60 -2.04 -0.02 2.31 16 43 H 0.06 2.15 8.06 -1.97 -0.02 2.14 16 Total: -1.00 -69.12 301.45 0.18 -68.94 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.02 Total: 16.85 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 2.89 Total: -35.18 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -4.17 Total: -76.38 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -1.42 Total: -20.61 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.85 Total: 46.38 kcal Total: -69.12 0.18 -68.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717256043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.047 kcal (2) G-P(sol) polarization free energy of solvation -69.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds