Wall clock time and date at job start Mon Mar 30 2020 08:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53094 * 1 3 3 C 1.50735 * 109.67213 * 2 1 4 4 H 1.08000 * 120.00164 * 120.95187 * 3 2 1 5 5 C 1.37882 * 119.99793 * 300.95608 * 3 2 1 6 6 N 1.31516 * 120.00027 * 359.97438 * 5 3 2 7 7 Si 1.86799 * 119.99909 * 179.97438 * 5 3 2 8 8 H 1.48497 * 109.47149 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46813 * 119.99926 * 7 5 3 10 10 H 1.48494 * 109.47275 * 239.99738 * 7 5 3 11 11 C 1.54148 * 109.97681 * 120.84870 * 2 1 3 12 12 C 1.55176 * 102.06558 * 91.90802 * 11 2 1 13 13 C 1.54766 * 102.56714 * 33.18472 * 12 11 2 14 14 C 1.51497 * 109.03708 * 88.09674 * 13 12 11 15 15 C 1.51919 * 114.98274 * 100.63103 * 14 13 12 16 16 H 1.10667 * 108.33877 * 164.11939 * 15 14 13 17 17 C 1.52037 * 112.28165 * 283.35031 * 15 14 13 18 18 C 1.52059 * 113.76109 * 74.72504 * 17 15 14 19 19 C 1.52507 * 112.57067 * 42.53374 * 18 17 15 20 20 N 1.46251 * 110.52513 * 311.50005 * 19 18 17 21 21 C 1.46134 * 111.35525 * 62.94164 * 20 19 18 22 22 C 1.44715 * 114.05320 * 292.06477 * 20 19 18 23 23 O 1.42813 * 110.27942 * 238.51836 * 2 1 3 24 24 H 1.08998 * 109.46576 * 299.15104 * 1 2 3 25 25 H 1.08997 * 109.47171 * 59.15098 * 1 2 3 26 26 H 1.08996 * 109.46822 * 179.15152 * 1 2 3 27 27 H 0.96998 * 120.00209 * 179.97438 * 6 5 3 28 28 H 1.09081 * 111.01779 * 333.58306 * 11 2 1 29 29 H 1.09061 * 110.89063 * 210.19358 * 11 2 1 30 30 H 1.08657 * 111.73212 * 273.73848 * 12 11 2 31 31 H 1.09522 * 109.35398 * 150.52167 * 12 11 2 32 32 H 1.10036 * 108.87109 * 338.10582 * 14 13 12 33 33 H 1.10195 * 108.66189 * 222.63199 * 14 13 12 34 34 H 1.09886 * 108.98283 * 313.12468 * 17 15 14 35 35 H 1.09827 * 109.15171 * 196.82773 * 17 15 14 36 36 H 1.10352 * 108.50219 * 162.15531 * 18 17 15 37 37 H 1.08774 * 111.02082 * 279.16254 * 18 17 15 38 38 H 1.09255 * 109.64383 * 72.40427 * 19 18 17 39 39 H 1.09371 * 109.28731 * 191.20040 * 19 18 17 40 40 H 1.08760 * 110.21563 * 173.15645 * 21 20 19 41 41 H 1.08878 * 110.18660 * 51.72377 * 21 20 19 42 42 H 1.10493 * 108.79351 * 325.52362 * 22 20 19 43 43 H 1.10575 * 108.68715 * 211.44657 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5309 0.0000 0.0000 3 6 2.0384 1.4194 0.0000 4 1 2.6731 1.7659 0.8021 5 6 1.6921 2.2753 -1.0240 6 7 0.9194 1.8531 -2.0010 7 14 2.3203 4.0345 -1.0237 8 1 3.1651 4.2581 0.1769 9 1 3.1273 4.2721 -2.2475 10 1 1.1685 4.9714 -1.0006 11 6 2.0576 -0.7429 1.2438 12 6 2.2159 -2.1924 0.7130 13 6 2.6128 -1.9680 -0.7660 14 6 4.1190 -1.8350 -0.8587 15 6 4.8462 -3.0852 -1.3236 16 1 5.8713 -2.7992 -1.6271 17 6 4.9548 -4.1308 -0.2253 18 6 3.6518 -4.8629 0.0548 19 6 2.9077 -5.2424 -1.2211 20 7 2.8172 -4.0944 -2.1227 21 6 4.1410 -3.6527 -2.5562 22 6 1.9685 -3.0279 -1.6364 23 8 2.0259 -0.6996 -1.1424 24 1 -0.3632 0.5006 0.8975 25 1 -0.3633 0.5269 -0.8822 26 1 -0.3633 -1.0275 -0.0152 27 1 0.6755 2.4553 -2.7212 28 1 1.3342 -0.7022 2.0592 29 1 3.0181 -0.3361 1.5620 30 1 1.2893 -2.7541 0.7943 31 1 3.0252 -2.6916 1.2564 32 1 4.5114 -1.5388 0.1257 33 1 4.3583 -1.0105 -1.5495 34 1 5.2935 -3.6438 0.6997 35 1 5.7265 -4.8627 -0.4996 36 1 3.8828 -5.7904 0.6063 37 1 3.0017 -4.2711 0.6954 38 1 3.4305 -6.0608 -1.7216 39 1 1.8996 -5.5803 -0.9644 40 1 4.0492 -2.8801 -3.3162 41 1 4.7076 -4.4946 -2.9506 42 1 1.1268 -3.4711 -1.0743 43 1 1.5044 -2.5215 -2.5029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717256109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:51 Heat of formation + Delta-G solvation = -47.118759 kcal Electronic energy + Delta-G solvation = -22517.839148 eV Core-core repulsion = 19562.236819 eV Total energy + Delta-G solvation = -2955.602329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43254 -37.76999 -33.27785 -33.04377 -31.87731 -30.98543 -30.27676 -27.08809 -26.14560 -25.21982 -23.67207 -22.14285 -22.00068 -20.38735 -19.31400 -17.49183 -16.43700 -15.43243 -15.13488 -14.96412 -14.55620 -14.51683 -14.23982 -13.54769 -13.48549 -13.02627 -12.54654 -12.31311 -12.20277 -12.02320 -11.77057 -11.32653 -11.20010 -11.08229 -10.98633 -10.88783 -10.67649 -10.53539 -10.39401 -10.19884 -10.18707 -10.08703 -9.90120 -9.88675 -9.31334 -8.94094 -8.45814 -7.96900 -7.48176 -5.91227 -4.07194 3.30598 3.39109 3.42127 4.27304 4.44957 4.81093 4.85899 5.00407 5.04424 5.28841 5.35645 5.39707 5.44986 5.52589 5.58391 5.66419 5.72938 5.78599 5.94311 5.97532 6.03690 6.08447 6.17343 6.23056 6.24138 6.37785 6.44875 6.51738 6.56965 6.63859 6.65958 6.71780 6.83194 6.96303 7.05731 7.17787 7.42295 7.50742 7.69779 7.82625 8.17681 8.42804 8.73169 9.13410 9.63625 11.10466 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.006587 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.163705 B = 4249.855123 C = 4393.054286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.232 3.768 3 C -0.527 4.527 4 H 0.057 0.943 5 C 0.081 3.919 6 N -0.860 5.860 7 Si 0.885 3.115 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.284 1.284 11 C -0.141 4.141 12 C -0.147 4.147 13 C 0.091 3.909 14 C -0.110 4.110 15 C -0.118 4.118 16 H 0.064 0.936 17 C -0.101 4.101 18 C -0.164 4.164 19 C 0.070 3.930 20 N -0.549 5.549 21 C 0.075 3.925 22 C 0.074 3.926 23 O -0.346 6.346 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.009 0.991 27 H 0.258 0.742 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -12.430 2.397 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.195 3.805 3 C -0.565 4.565 4 H 0.075 0.925 5 C -0.124 4.124 6 N -0.496 5.496 7 Si 0.713 3.287 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.210 1.210 11 C -0.178 4.178 12 C -0.184 4.184 13 C 0.049 3.951 14 C -0.148 4.148 15 C -0.138 4.138 16 H 0.083 0.917 17 C -0.139 4.139 18 C -0.203 4.203 19 C -0.059 4.059 20 N -0.271 5.271 21 C -0.053 4.053 22 C -0.054 4.054 23 O -0.266 6.266 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.638 -12.424 1.652 13.364 hybrid contribution 0.819 1.252 1.088 1.850 sum 5.458 -11.172 2.740 12.732 Atomic orbital electron populations 1.22079 0.98020 0.97428 1.02537 1.19476 0.90484 0.90337 0.80233 1.21214 1.32342 0.94378 1.08584 0.92450 1.24989 0.94228 0.97982 0.95200 1.69959 1.34350 1.34880 1.10450 0.86671 0.78795 0.85272 0.77985 1.19859 1.20960 1.20987 1.23212 1.00857 0.93714 1.00062 1.23535 1.00176 0.98134 0.96577 1.21888 0.92286 0.88285 0.92632 1.21570 0.94633 0.96512 1.02043 1.21405 0.99820 0.95798 0.96775 0.91728 1.21146 0.96714 0.97410 0.98603 1.22137 0.97989 1.00606 0.99574 1.21867 0.99865 0.92984 0.91141 1.59465 1.15385 1.09408 1.42801 1.21752 0.88187 0.99514 0.95841 1.21815 0.93929 0.90137 0.99485 1.88894 1.76942 1.27504 1.33226 0.94893 0.89135 0.97202 0.93187 0.92365 0.92100 0.91943 0.91888 0.92684 0.90887 0.92662 0.92944 0.92820 0.90664 0.91447 0.91370 0.90308 0.91219 0.92060 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.55 37.21 0.32 -3.19 16 2 C 0.23 5.79 0.79 -91.11 -0.07 5.71 16 3 C -0.53 -14.57 8.22 -34.42 -0.28 -14.85 16 4 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 5 C 0.08 2.25 5.26 -17.82 -0.09 2.16 16 6 N -0.86 -24.75 10.94 55.43 0.61 -24.15 16 7 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 8 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 C -0.14 -2.95 5.82 -24.98 -0.15 -3.10 16 12 C -0.15 -2.66 4.12 -24.65 -0.10 -2.76 16 13 C 0.09 1.77 0.83 -91.19 -0.08 1.70 16 14 C -0.11 -2.00 4.44 -28.04 -0.12 -2.12 16 15 C -0.12 -1.71 2.75 -91.70 -0.25 -1.96 16 16 H 0.06 0.87 8.28 -50.97 -0.42 0.45 16 17 C -0.10 -1.28 5.18 -27.70 -0.14 -1.42 16 18 C -0.16 -2.03 5.13 -27.46 -0.14 -2.17 16 19 C 0.07 0.88 5.79 -4.43 -0.03 0.86 16 20 N -0.55 -8.36 4.65 -237.38 -1.10 -9.46 16 21 C 0.07 1.08 5.76 -4.28 -0.02 1.05 16 22 C 0.07 1.33 4.99 -5.74 -0.03 1.31 16 23 O -0.35 -8.70 8.95 -35.23 -0.32 -9.01 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 2.47 5.99 -51.93 -0.31 2.16 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.06 1.15 7.91 -51.88 -0.41 0.74 16 29 H 0.06 1.29 7.78 -51.89 -0.40 0.89 16 30 H 0.06 1.08 7.26 -52.12 -0.38 0.71 16 31 H 0.06 1.03 5.84 -51.63 -0.30 0.73 16 32 H 0.05 1.01 7.32 -51.34 -0.38 0.64 16 33 H 0.07 1.52 8.00 -51.25 -0.41 1.11 16 34 H 0.05 0.71 8.06 -51.42 -0.41 0.30 16 35 H 0.05 0.59 8.21 -51.46 -0.42 0.16 16 36 H 0.05 0.57 8.25 -51.16 -0.42 0.15 16 37 H 0.07 1.02 4.38 -52.06 -0.23 0.79 16 38 H 0.07 0.76 8.14 -51.78 -0.42 0.34 16 39 H 0.07 0.83 7.97 -51.72 -0.41 0.42 16 40 H 0.08 1.23 8.12 -52.06 -0.42 0.81 16 41 H 0.07 0.86 8.09 -52.00 -0.42 0.44 16 42 H 0.06 1.06 6.85 -51.07 -0.35 0.71 16 43 H 0.08 1.66 7.90 -51.03 -0.40 1.25 16 LS Contribution 309.56 15.07 4.66 4.66 Total: -1.00 -28.87 309.56 -9.67 -38.54 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.31 Total: 1.88 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.19 Total: -18.79 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: -0.50 Total: -33.61 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.32 Total: -9.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.87 -9.67 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717256109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.578 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds