Wall clock time and date at job start Mon Mar 30 2020 08:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53094 * 1 3 3 C 1.50735 * 109.67213 * 2 1 4 4 H 1.08000 * 120.00164 * 120.95187 * 3 2 1 5 5 C 1.37882 * 119.99793 * 300.95608 * 3 2 1 6 6 N 1.31516 * 120.00027 * 359.97438 * 5 3 2 7 7 Si 1.86799 * 119.99909 * 179.97438 * 5 3 2 8 8 H 1.48497 * 109.47149 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46813 * 119.99926 * 7 5 3 10 10 H 1.48494 * 109.47275 * 239.99738 * 7 5 3 11 11 C 1.54148 * 109.97681 * 120.84870 * 2 1 3 12 12 C 1.55176 * 102.06558 * 91.90802 * 11 2 1 13 13 C 1.54766 * 102.56714 * 33.18472 * 12 11 2 14 14 C 1.51497 * 109.03708 * 88.09674 * 13 12 11 15 15 C 1.51919 * 114.98274 * 100.63103 * 14 13 12 16 16 H 1.10667 * 108.33877 * 164.11939 * 15 14 13 17 17 C 1.52037 * 112.28165 * 283.35031 * 15 14 13 18 18 C 1.52059 * 113.76109 * 74.72504 * 17 15 14 19 19 C 1.52507 * 112.57067 * 42.53374 * 18 17 15 20 20 N 1.46251 * 110.52513 * 311.50005 * 19 18 17 21 21 C 1.46134 * 111.35525 * 62.94164 * 20 19 18 22 22 C 1.44715 * 114.05320 * 292.06477 * 20 19 18 23 23 O 1.42813 * 110.27942 * 238.51836 * 2 1 3 24 24 H 1.08998 * 109.46576 * 299.15104 * 1 2 3 25 25 H 1.08997 * 109.47171 * 59.15098 * 1 2 3 26 26 H 1.08996 * 109.46822 * 179.15152 * 1 2 3 27 27 H 0.96998 * 120.00209 * 179.97438 * 6 5 3 28 28 H 1.09081 * 111.01779 * 333.58306 * 11 2 1 29 29 H 1.09061 * 110.89063 * 210.19358 * 11 2 1 30 30 H 1.08657 * 111.73212 * 273.73848 * 12 11 2 31 31 H 1.09522 * 109.35398 * 150.52167 * 12 11 2 32 32 H 1.10036 * 108.87109 * 338.10582 * 14 13 12 33 33 H 1.10195 * 108.66189 * 222.63199 * 14 13 12 34 34 H 1.09886 * 108.98283 * 313.12468 * 17 15 14 35 35 H 1.09827 * 109.15171 * 196.82773 * 17 15 14 36 36 H 1.10352 * 108.50219 * 162.15531 * 18 17 15 37 37 H 1.08774 * 111.02082 * 279.16254 * 18 17 15 38 38 H 1.09255 * 109.64383 * 72.40427 * 19 18 17 39 39 H 1.09371 * 109.28731 * 191.20040 * 19 18 17 40 40 H 1.08760 * 110.21563 * 173.15645 * 21 20 19 41 41 H 1.08878 * 110.18660 * 51.72377 * 21 20 19 42 42 H 1.10493 * 108.79351 * 325.52362 * 22 20 19 43 43 H 1.10575 * 108.68715 * 211.44657 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5309 0.0000 0.0000 3 6 2.0384 1.4194 0.0000 4 1 2.6731 1.7659 0.8021 5 6 1.6921 2.2753 -1.0240 6 7 0.9194 1.8531 -2.0010 7 14 2.3203 4.0345 -1.0237 8 1 3.1651 4.2581 0.1769 9 1 3.1273 4.2721 -2.2475 10 1 1.1685 4.9714 -1.0006 11 6 2.0576 -0.7429 1.2438 12 6 2.2159 -2.1924 0.7130 13 6 2.6128 -1.9680 -0.7660 14 6 4.1190 -1.8350 -0.8587 15 6 4.8462 -3.0852 -1.3236 16 1 5.8713 -2.7992 -1.6271 17 6 4.9548 -4.1308 -0.2253 18 6 3.6518 -4.8629 0.0548 19 6 2.9077 -5.2424 -1.2211 20 7 2.8172 -4.0944 -2.1227 21 6 4.1410 -3.6527 -2.5562 22 6 1.9685 -3.0279 -1.6364 23 8 2.0259 -0.6996 -1.1424 24 1 -0.3632 0.5006 0.8975 25 1 -0.3633 0.5269 -0.8822 26 1 -0.3633 -1.0275 -0.0152 27 1 0.6755 2.4553 -2.7212 28 1 1.3342 -0.7022 2.0592 29 1 3.0181 -0.3361 1.5620 30 1 1.2893 -2.7541 0.7943 31 1 3.0252 -2.6916 1.2564 32 1 4.5114 -1.5388 0.1257 33 1 4.3583 -1.0105 -1.5495 34 1 5.2935 -3.6438 0.6997 35 1 5.7265 -4.8627 -0.4996 36 1 3.8828 -5.7904 0.6063 37 1 3.0017 -4.2711 0.6954 38 1 3.4305 -6.0608 -1.7216 39 1 1.8996 -5.5803 -0.9644 40 1 4.0492 -2.8801 -3.3162 41 1 4.7076 -4.4946 -2.9506 42 1 1.1268 -3.4711 -1.0743 43 1 1.5044 -2.5215 -2.5029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717256109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:50 Heat of formation + Delta-G solvation = -64.723756 kcal Electronic energy + Delta-G solvation = -22518.602558 eV Core-core repulsion = 19562.236819 eV Total energy + Delta-G solvation = -2956.365739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79025 -39.33996 -35.15018 -34.25404 -33.27987 -32.69307 -31.87164 -28.72898 -27.51377 -27.16643 -25.08418 -23.55162 -23.17717 -21.78573 -21.13458 -18.72527 -18.46467 -16.97012 -16.56609 -16.45622 -16.13125 -15.76296 -15.60612 -15.25134 -14.83630 -14.30453 -14.06757 -13.98287 -13.71083 -13.64234 -13.09214 -13.00788 -12.83989 -12.62782 -12.48287 -12.38731 -12.27545 -12.20291 -12.02468 -11.87865 -11.73135 -11.47745 -11.34476 -11.24638 -10.88039 -10.70339 -10.55367 -9.74906 -8.79499 -8.01833 -6.24909 1.37029 1.39305 1.49589 2.41985 3.00732 3.15455 3.44351 3.75646 3.79403 3.92021 3.97457 4.06148 4.20651 4.26156 4.37029 4.40170 4.47717 4.58603 4.61299 4.64054 4.72947 4.89020 4.90332 4.94854 4.97176 5.01482 5.03248 5.07847 5.11480 5.21977 5.23407 5.24391 5.32101 5.36380 5.47517 5.54460 5.57510 5.69158 6.16078 6.33170 6.37331 6.45841 6.70837 7.24384 7.51418 8.98462 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.006587 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.163705 B = 4249.855123 C = 4393.054286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.220 3.780 3 C -0.547 4.547 4 H 0.050 0.950 5 C 0.033 3.967 6 N -0.889 5.889 7 Si 0.945 3.055 8 H -0.268 1.268 9 H -0.284 1.284 10 H -0.277 1.277 11 C -0.138 4.138 12 C -0.131 4.131 13 C 0.085 3.915 14 C -0.102 4.102 15 C -0.114 4.114 16 H 0.076 0.924 17 C -0.099 4.099 18 C -0.164 4.164 19 C 0.067 3.933 20 N -0.554 5.554 21 C 0.074 3.926 22 C 0.089 3.911 23 O -0.384 6.384 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.026 0.974 27 H 0.257 0.743 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -14.702 3.536 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.182 3.818 3 C -0.585 4.585 4 H 0.068 0.932 5 C -0.169 4.169 6 N -0.526 5.526 7 Si 0.771 3.229 8 H -0.193 1.193 9 H -0.211 1.211 10 H -0.202 1.202 11 C -0.175 4.175 12 C -0.168 4.168 13 C 0.043 3.957 14 C -0.140 4.140 15 C -0.134 4.134 16 H 0.094 0.906 17 C -0.137 4.137 18 C -0.203 4.203 19 C -0.060 4.060 20 N -0.276 5.276 21 C -0.053 4.053 22 C -0.040 4.040 23 O -0.304 6.304 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.869 -14.710 2.803 16.084 hybrid contribution 0.458 1.921 0.706 2.097 sum 6.326 -12.790 3.509 14.694 Atomic orbital electron populations 1.21949 0.98251 0.97952 1.01136 1.19511 0.90457 0.89862 0.81946 1.21596 1.32119 0.96426 1.08378 0.93172 1.25706 0.94512 1.01717 0.94976 1.70108 1.35493 1.36027 1.10984 0.85726 0.78380 0.80917 0.77863 1.19264 1.21055 1.20210 1.23109 1.00540 0.95058 0.98828 1.23457 1.01635 0.96521 0.95192 1.22175 0.92800 0.86613 0.94073 1.21516 0.94323 0.97496 1.00691 1.21385 0.99665 0.94707 0.97603 0.90566 1.21132 0.97778 0.97216 0.97562 1.22109 0.97351 1.01548 0.99261 1.22011 1.00858 0.92056 0.91098 1.59417 1.15572 1.08985 1.43627 1.21797 0.88146 1.00077 0.95309 1.21553 0.94588 0.90334 0.97519 1.88825 1.77519 1.30037 1.34035 0.94434 0.92315 0.95529 0.93387 0.91042 0.92856 0.90753 0.89417 0.93202 0.94904 0.92698 0.90324 0.90078 0.92067 0.89080 0.90763 0.92740 0.88053 0.91335 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 8.55 72.01 0.62 -6.14 16 2 C 0.22 11.19 0.79 -11.11 -0.01 11.18 16 3 C -0.55 -31.04 8.22 25.61 0.21 -30.83 16 4 H 0.05 2.82 7.60 -2.91 -0.02 2.80 16 5 C 0.03 1.88 5.26 84.66 0.45 2.32 16 6 N -0.89 -53.07 10.94 21.45 0.23 -52.83 16 7 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 8 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 9 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 C -0.14 -5.71 5.82 31.73 0.18 -5.52 16 12 C -0.13 -4.53 4.12 31.94 0.13 -4.40 16 13 C 0.08 3.31 0.83 -11.16 -0.01 3.30 16 14 C -0.10 -3.74 4.44 29.75 0.13 -3.61 16 15 C -0.11 -3.07 2.75 -11.49 -0.03 -3.10 16 16 H 0.08 1.89 8.28 -1.49 -0.01 1.88 16 17 C -0.10 -2.12 5.18 29.97 0.16 -1.97 16 18 C -0.16 -3.34 5.13 30.12 0.15 -3.18 16 19 C 0.07 1.44 5.79 86.26 0.50 1.94 16 20 N -0.55 -15.87 4.65 -904.93 -4.20 -20.08 16 21 C 0.07 2.01 5.76 86.42 0.50 2.51 16 22 C 0.09 3.18 4.99 86.23 0.43 3.61 16 23 O -0.38 -19.99 8.95 -148.98 -1.33 -21.32 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 3.32 5.99 -2.39 -0.01 3.30 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.07 2.73 7.91 -2.34 -0.02 2.71 16 29 H 0.05 2.25 7.78 -2.35 -0.02 2.23 16 30 H 0.07 2.41 7.26 -2.57 -0.02 2.39 16 31 H 0.09 2.62 5.84 -2.11 -0.01 2.61 16 32 H 0.05 1.82 7.32 -1.83 -0.01 1.81 16 33 H 0.03 1.42 8.00 -1.75 -0.01 1.41 16 34 H 0.05 1.20 8.06 -1.91 -0.02 1.19 16 35 H 0.08 1.34 8.21 -1.95 -0.02 1.32 16 36 H 0.08 1.27 8.25 -1.66 -0.01 1.26 16 37 H 0.06 1.42 4.38 -2.51 -0.01 1.41 16 38 H 0.09 1.59 8.14 -2.25 -0.02 1.57 16 39 H 0.07 1.53 7.97 -2.19 -0.02 1.51 16 40 H 0.05 1.72 8.12 -2.51 -0.02 1.70 16 41 H 0.10 2.13 8.09 -2.45 -0.02 2.11 16 42 H 0.07 2.30 6.85 -1.58 -0.01 2.29 16 43 H 0.04 1.78 7.90 -1.54 -0.01 1.76 16 Total: -1.00 -64.74 309.56 1.14 -63.59 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 1.01 Total: 17.66 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.41 Total: -33.89 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -3.97 Total: -72.91 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.33 Total: -21.32 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.74 1.14 -63.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717256109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.131 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds