Wall clock time and date at job start Mon Mar 30 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 180.02562 * 12 11 10 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00115 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.79658 * 60.00173 * 15 13 12 17 17 C 1.54925 * 109.79999 * 299.17904 * 15 13 12 18 18 C 1.52720 * 108.56420 * 183.49872 * 17 15 13 19 19 C 1.50800 * 108.91257 * 302.09401 * 18 17 15 20 20 C 1.31663 * 118.08758 * 104.88583 * 19 18 17 21 21 C 1.50514 * 116.92439 * 0.28129 * 20 19 18 22 22 C 1.49509 * 113.04507 * 275.42688 * 21 20 19 23 23 C 1.51387 * 117.51401 * 79.71775 * 22 21 20 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 32 32 H 1.08996 * 109.62145 * 303.16457 * 17 15 13 33 33 H 1.08998 * 109.61998 * 63.71960 * 17 15 13 34 34 H 1.09008 * 109.55404 * 182.27930 * 18 17 15 35 35 H 1.09000 * 109.69681 * 61.99166 * 18 17 15 36 36 H 1.07995 * 120.95472 * 284.87176 * 19 18 17 37 37 H 1.07999 * 121.53764 * 180.29742 * 20 19 18 38 38 H 1.09007 * 108.76762 * 154.50499 * 21 20 19 39 39 H 1.08996 * 108.67782 * 36.28386 * 21 20 19 40 40 H 1.08995 * 107.83535 * 317.68321 * 22 21 20 41 41 H 1.09001 * 107.83685 * 201.75063 * 22 21 20 42 42 H 1.09000 * 109.26321 * 165.92378 * 23 22 21 43 43 H 1.09000 * 109.26785 * 46.46743 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0024 13 6 1.9832 -7.3713 0.0024 14 8 0.7907 -7.5929 0.0016 15 6 2.9625 -8.5167 0.0033 16 1 3.5915 -8.4639 0.8920 17 6 3.8446 -8.4541 -1.2687 18 6 4.7647 -9.6729 -1.2829 19 6 5.5932 -9.6746 -0.0229 20 6 5.2764 -10.5303 0.9262 21 6 4.1083 -11.4415 0.6602 22 6 2.7911 -10.8162 0.9908 23 6 2.2012 -9.8535 -0.0176 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8714 -3.6047 -0.8890 28 1 2.8726 -3.6039 0.8910 29 1 0.8541 -5.0447 0.8922 30 1 0.8534 -5.0451 -0.8877 31 1 3.3861 -5.9233 0.0026 32 1 3.2102 -8.4651 -2.1550 33 1 4.4428 -7.5430 -1.2548 34 1 5.4216 -9.6241 -2.1515 35 1 4.1674 -10.5836 -1.3280 36 1 6.4228 -8.9936 0.0973 37 1 5.8289 -10.5761 1.8530 38 1 4.2265 -12.3464 1.2564 39 1 4.1119 -11.7146 -0.3950 40 1 2.9020 -10.2839 1.9355 41 1 2.0704 -11.6189 1.1474 42 1 1.1539 -9.6747 0.2259 43 1 2.2685 -10.2903 -1.0140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719063372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:23 Heat of formation + Delta-G solvation = -52.400471 kcal Electronic energy + Delta-G solvation = -19940.519403 eV Core-core repulsion = 16984.688041 eV Total energy + Delta-G solvation = -2955.831362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21547 -38.36197 -35.41779 -33.62292 -33.24464 -33.02431 -31.11557 -27.75948 -26.77107 -25.73366 -23.19471 -22.10411 -21.46070 -20.63535 -19.51870 -18.24577 -17.25935 -16.44149 -16.04307 -15.53565 -15.28133 -15.01353 -14.47777 -14.19685 -14.12259 -13.88980 -13.50099 -13.16109 -12.60863 -12.29334 -12.22899 -11.85543 -11.71045 -11.66497 -11.44528 -11.09163 -10.96878 -10.88233 -10.72218 -10.62268 -10.58621 -10.21680 -9.85906 -9.77536 -9.32539 -9.15817 -9.10301 -8.73052 -8.37117 -6.01756 -4.05049 1.97428 2.83644 3.31849 3.36534 3.38086 3.47105 4.37225 4.44107 4.50445 4.70674 4.74762 4.82247 4.87788 5.11754 5.18707 5.27888 5.33756 5.33853 5.43188 5.52370 5.60855 5.73946 5.74581 5.78586 5.80836 5.89752 5.91907 5.99827 6.15939 6.17694 6.28750 6.44329 6.54194 6.60874 6.64053 6.85710 7.01524 7.63316 7.76330 7.76877 7.96925 8.37571 8.46327 9.01475 9.59074 11.09527 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036679 B = 0.003070 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.194875 B = 9118.014811 C = 9562.278033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.725 5.725 13 C 0.510 3.490 14 O -0.546 6.546 15 C -0.110 4.110 16 H 0.100 0.900 17 C -0.103 4.103 18 C -0.107 4.107 19 C -0.156 4.156 20 C -0.162 4.162 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.110 4.110 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 -22.566 -0.315 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.376 5.376 13 C 0.296 3.704 14 O -0.424 6.424 15 C -0.131 4.131 16 H 0.118 0.882 17 C -0.140 4.140 18 C -0.144 4.144 19 C -0.174 4.174 20 C -0.180 4.180 21 C -0.134 4.134 22 C -0.151 4.151 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.878 -22.592 -0.312 24.659 hybrid contribution 1.032 1.199 0.129 1.587 sum 10.911 -21.393 -0.183 24.016 Atomic orbital electron populations 1.69953 1.06068 1.26813 1.50468 1.25030 0.94856 0.99293 0.95262 0.86641 0.79565 0.83093 0.78590 1.20238 1.21257 1.20238 1.21174 0.92953 0.90976 1.51072 0.92704 1.19023 0.93846 0.90854 0.97626 1.21882 0.99742 0.93418 1.00803 1.21634 0.91948 0.85255 1.01889 1.46216 1.10684 1.05997 1.74664 1.20632 0.89645 0.84212 0.75872 1.90660 1.17075 1.84600 1.50030 1.21991 0.96536 0.93971 1.00592 0.88224 1.21823 0.97122 0.98455 0.96650 1.21041 0.97626 0.99513 0.96237 1.23094 0.99453 0.98907 0.95936 1.23036 0.98148 0.97991 0.98860 1.20102 0.93116 0.97857 1.02278 1.20492 0.95788 0.99051 0.99770 1.21472 1.01084 0.92564 0.99676 0.92856 0.96301 0.96304 0.92772 0.92789 0.91889 0.91852 0.76892 0.91056 0.91298 0.91305 0.89629 0.87122 0.86961 0.91886 0.90803 0.92396 0.92156 0.89243 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.73 -10.51 5.48 -60.29 -0.33 -10.85 16 13 C 0.51 7.56 7.18 -10.98 -0.08 7.48 16 14 O -0.55 -10.27 15.22 5.55 0.08 -10.18 16 15 C -0.11 -1.16 2.22 -90.31 -0.20 -1.36 16 16 H 0.10 1.00 6.29 -51.93 -0.33 0.67 16 17 C -0.10 -0.91 4.81 -25.86 -0.12 -1.03 16 18 C -0.11 -0.80 5.41 -27.98 -0.15 -0.95 16 19 C -0.16 -1.16 8.55 -36.13 -0.31 -1.47 16 20 C -0.16 -1.20 9.28 -36.27 -0.34 -1.54 16 21 C -0.10 -0.69 5.14 -29.70 -0.15 -0.85 16 22 C -0.11 -0.95 4.90 -29.27 -0.14 -1.10 16 23 C -0.11 -1.13 4.96 -27.10 -0.13 -1.26 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.40 4.69 8.09 -40.82 -0.33 4.36 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.57 7.80 -51.93 -0.40 0.17 16 34 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.09 0.62 3.57 -51.93 -0.19 0.44 16 36 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.11 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.07 0.51 5.61 -51.93 -0.29 0.22 16 40 H 0.06 0.52 7.71 -51.93 -0.40 0.12 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 1.14 6.46 -51.93 -0.34 0.81 16 43 H 0.07 0.62 6.57 -51.93 -0.34 0.27 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -31.74 333.45 -9.08 -40.82 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.23 Total: 0.44 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.34 Total: -15.55 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.41 Total: -37.07 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.74 -9.08 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719063372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.584 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds