Wall clock time and date at job start Mon Mar 30 2020 07:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 180.02562 * 12 11 10 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00115 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.79658 * 60.00173 * 15 13 12 17 17 C 1.54925 * 109.79999 * 299.17904 * 15 13 12 18 18 C 1.52720 * 108.56420 * 183.49872 * 17 15 13 19 19 C 1.50800 * 108.91257 * 302.09401 * 18 17 15 20 20 C 1.31663 * 118.08758 * 104.88583 * 19 18 17 21 21 C 1.50514 * 116.92439 * 0.28129 * 20 19 18 22 22 C 1.49509 * 113.04507 * 275.42688 * 21 20 19 23 23 C 1.51387 * 117.51401 * 79.71775 * 22 21 20 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 32 32 H 1.08996 * 109.62145 * 303.16457 * 17 15 13 33 33 H 1.08998 * 109.61998 * 63.71960 * 17 15 13 34 34 H 1.09008 * 109.55404 * 182.27930 * 18 17 15 35 35 H 1.09000 * 109.69681 * 61.99166 * 18 17 15 36 36 H 1.07995 * 120.95472 * 284.87176 * 19 18 17 37 37 H 1.07999 * 121.53764 * 180.29742 * 20 19 18 38 38 H 1.09007 * 108.76762 * 154.50499 * 21 20 19 39 39 H 1.08996 * 108.67782 * 36.28386 * 21 20 19 40 40 H 1.08995 * 107.83535 * 317.68321 * 22 21 20 41 41 H 1.09001 * 107.83685 * 201.75063 * 22 21 20 42 42 H 1.09000 * 109.26321 * 165.92378 * 23 22 21 43 43 H 1.09000 * 109.26785 * 46.46743 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0024 13 6 1.9832 -7.3713 0.0024 14 8 0.7907 -7.5929 0.0016 15 6 2.9625 -8.5167 0.0033 16 1 3.5915 -8.4639 0.8920 17 6 3.8446 -8.4541 -1.2687 18 6 4.7647 -9.6729 -1.2829 19 6 5.5932 -9.6746 -0.0229 20 6 5.2764 -10.5303 0.9262 21 6 4.1083 -11.4415 0.6602 22 6 2.7911 -10.8162 0.9908 23 6 2.2012 -9.8535 -0.0176 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8714 -3.6047 -0.8890 28 1 2.8726 -3.6039 0.8910 29 1 0.8541 -5.0447 0.8922 30 1 0.8534 -5.0451 -0.8877 31 1 3.3861 -5.9233 0.0026 32 1 3.2102 -8.4651 -2.1550 33 1 4.4428 -7.5430 -1.2548 34 1 5.4216 -9.6241 -2.1515 35 1 4.1674 -10.5836 -1.3280 36 1 6.4228 -8.9936 0.0973 37 1 5.8289 -10.5761 1.8530 38 1 4.2265 -12.3464 1.2564 39 1 4.1119 -11.7146 -0.3950 40 1 2.9020 -10.2839 1.9355 41 1 2.0704 -11.6189 1.1474 42 1 1.1539 -9.6747 0.2259 43 1 2.2685 -10.2903 -1.0140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719063372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:22 Heat of formation + Delta-G solvation = -71.025840 kcal Electronic energy + Delta-G solvation = -19941.327059 eV Core-core repulsion = 16984.688041 eV Total energy + Delta-G solvation = -2956.639018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25992 -39.26059 -36.98556 -35.23039 -34.28306 -33.79177 -32.86489 -29.04884 -27.89312 -26.72388 -24.89321 -22.86909 -22.40202 -22.31240 -20.68980 -18.83152 -18.59166 -18.22664 -16.94654 -16.86614 -16.49677 -16.43641 -15.81833 -15.34217 -15.21973 -14.69824 -14.41925 -14.30922 -13.96165 -13.77638 -13.59294 -13.29714 -12.88496 -12.71569 -12.56217 -12.43287 -12.36987 -12.19181 -11.74685 -11.71701 -11.67590 -11.57535 -11.31577 -11.25913 -10.83943 -10.69542 -10.55688 -10.09986 -9.71593 -8.20069 -6.32036 1.41293 1.42373 1.44542 1.52411 1.64356 2.23664 2.42692 3.13516 3.67536 3.70696 3.84742 4.08988 4.13292 4.18379 4.20399 4.22182 4.43686 4.52327 4.54130 4.55888 4.68346 4.76344 4.92379 4.93446 4.94121 5.01665 5.08625 5.09758 5.15320 5.20432 5.27754 5.36593 5.41866 5.46491 5.51102 5.56694 5.69111 5.82943 5.90490 6.10151 6.21146 6.59222 6.85396 7.27529 7.37738 8.91949 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036679 B = 0.003070 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.194875 B = 9118.014811 C = 9562.278033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.714 5.714 13 C 0.507 3.493 14 O -0.590 6.590 15 C -0.098 4.098 16 H 0.112 0.888 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.161 4.161 20 C -0.167 4.167 21 C -0.095 4.095 22 C -0.108 4.108 23 C -0.109 4.109 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.414 0.586 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.784 -23.091 -0.420 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.366 5.366 13 C 0.295 3.705 14 O -0.471 6.471 15 C -0.119 4.119 16 H 0.130 0.870 17 C -0.137 4.137 18 C -0.140 4.140 19 C -0.179 4.179 20 C -0.185 4.185 21 C -0.132 4.132 22 C -0.146 4.146 23 C -0.146 4.146 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.251 0.749 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.783 -23.134 -0.417 26.434 hybrid contribution 0.091 1.322 0.164 1.335 sum 12.874 -21.812 -0.252 25.329 Atomic orbital electron populations 1.70106 1.07998 1.27905 1.51597 1.26041 0.95747 1.03618 0.94714 0.85458 0.78189 0.77825 0.79317 1.18944 1.21161 1.18973 1.21661 0.93773 0.92002 1.50642 0.91469 1.18937 0.94435 0.93037 0.94964 1.21590 0.98403 0.91782 1.02101 1.21218 0.92082 0.85828 1.00434 1.46015 1.11011 1.05165 1.74382 1.21421 0.89769 0.84875 0.74404 1.90648 1.19321 1.85226 1.51895 1.21995 0.95701 0.92004 1.02219 0.87025 1.21831 0.96983 0.99855 0.95070 1.21010 0.97476 0.98671 0.96887 1.23199 0.99716 0.99149 0.95798 1.23176 0.98176 0.97951 0.99204 1.20083 0.92171 0.98114 1.02856 1.20432 0.96757 0.98690 0.98674 1.21440 0.99457 0.92938 1.00811 0.92782 0.99042 0.99103 0.91292 0.91420 0.93551 0.93397 0.74905 0.91702 0.90327 0.90156 0.89479 0.86354 0.86245 0.90828 0.90277 0.93072 0.91628 0.92172 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 11 C 0.13 4.66 5.67 86.38 0.49 5.15 16 12 N -0.71 -20.08 5.48 -463.06 -2.54 -22.61 16 13 C 0.51 14.87 7.18 87.66 0.63 15.50 16 14 O -0.59 -22.81 15.22 -3.05 -0.05 -22.86 16 15 C -0.10 -1.96 2.22 -10.59 -0.02 -1.98 16 16 H 0.11 2.01 6.29 -2.39 -0.02 1.99 16 17 C -0.10 -1.55 4.81 31.16 0.15 -1.40 16 18 C -0.10 -1.26 5.41 29.79 0.16 -1.10 16 19 C -0.16 -1.94 8.55 25.06 0.21 -1.72 16 20 C -0.17 -2.03 9.28 24.97 0.23 -1.80 16 21 C -0.10 -1.14 5.14 28.67 0.15 -1.00 16 22 C -0.11 -1.66 4.90 28.95 0.14 -1.52 16 23 C -0.11 -2.15 4.96 30.35 0.15 -2.00 16 24 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.41 8.87 8.09 -92.71 -0.75 8.12 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.08 7.80 -2.39 -0.02 1.06 16 34 H 0.08 0.83 8.14 -2.38 -0.02 0.82 16 35 H 0.09 1.05 3.57 -2.39 -0.01 1.04 16 36 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.12 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.08 0.89 5.61 -2.39 -0.01 0.87 16 40 H 0.05 0.86 7.71 -2.39 -0.02 0.84 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.58 6.46 -2.39 -0.02 1.56 16 43 H 0.07 1.32 6.57 -2.39 -0.02 1.31 16 Total: -1.00 -69.54 333.45 3.26 -66.28 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.23 Total: 14.82 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 3.30 Total: -24.19 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.25 Total: -79.90 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -69.54 3.26 -66.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719063372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.747 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds