Wall clock time and date at job start Mon Mar 30 2020 07:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99935 * 2 1 4 4 H 1.48507 * 109.46941 * 266.09630 * 3 2 1 5 5 H 1.48496 * 109.47210 * 26.09750 * 3 2 1 6 6 H 1.48501 * 109.47036 * 146.09963 * 3 2 1 7 7 C 1.37875 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00709 * 4.06448 * 7 2 1 9 9 C 1.50705 * 119.99690 * 184.06977 * 7 2 1 10 10 C 1.52999 * 115.55464 * 84.85580 * 9 7 2 11 11 O 1.42903 * 109.47032 * 65.50241 * 10 9 7 12 12 C 1.42892 * 114.00238 * 183.10154 * 11 10 9 13 13 C 1.52998 * 109.47294 * 183.05329 * 12 11 10 14 14 C 1.53143 * 109.42795 * 184.02233 * 13 12 11 15 15 C 1.53713 * 108.88836 * 185.95785 * 14 13 12 16 16 H 1.08999 * 112.12593 * 188.37072 * 15 14 13 17 17 C 1.54609 * 107.80978 * 312.37976 * 15 14 13 18 18 C 1.54283 * 104.84286 * 88.55552 * 17 15 14 19 19 C 1.54603 * 104.83987 * 0.02562 * 18 17 15 20 20 H 1.09007 * 112.21277 * 147.48142 * 19 18 17 21 21 C 1.53132 * 109.38850 * 63.78660 * 13 12 11 22 22 N 1.48714 * 107.23731 * 64.08932 * 15 14 13 23 23 C 1.52998 * 117.49611 * 230.52814 * 9 7 2 24 24 C 1.52998 * 117.49580 * 299.18285 * 9 7 2 25 25 H 0.97001 * 119.99940 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47258 * 305.50633 * 10 9 7 27 27 H 1.08994 * 109.47093 * 185.50278 * 10 9 7 28 28 H 1.08997 * 109.47371 * 63.04867 * 12 11 10 29 29 H 1.09006 * 109.46919 * 303.05261 * 12 11 10 30 30 H 1.08998 * 109.42759 * 303.91369 * 13 12 11 31 31 H 1.08997 * 109.56769 * 305.77977 * 14 13 12 32 32 H 1.09003 * 109.56349 * 66.13827 * 14 13 12 33 33 H 1.09007 * 110.36276 * 329.71322 * 17 15 14 34 34 H 1.09003 * 110.36551 * 207.40248 * 17 15 14 35 35 H 1.08997 * 110.37006 * 241.15770 * 18 17 15 36 36 H 1.09000 * 110.45272 * 118.89131 * 18 17 15 37 37 H 1.09006 * 109.56987 * 293.89033 * 21 13 12 38 38 H 1.09003 * 109.57079 * 54.12503 * 21 13 12 39 39 H 1.00898 * 110.99610 * 168.34711 * 22 15 14 40 40 H 1.09004 * 117.50002 * 215.00543 * 23 9 7 41 41 H 1.09005 * 117.50085 * 0.02562 * 23 9 7 42 42 H 1.08995 * 117.50492 * 359.97438 * 24 9 7 43 43 H 1.09003 * 117.49488 * 144.97870 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5792 1.9988 -1.3969 5 1 1.4078 2.6751 0.6159 6 1 3.5031 1.4654 0.7809 7 6 2.0045 -1.1940 -0.0005 8 1 1.4667 -2.1282 -0.0672 9 6 3.5087 -1.1957 0.0921 10 6 4.0828 -1.1221 1.5084 11 8 3.7383 -2.3099 2.2243 12 6 4.1686 -2.3128 3.5869 13 6 3.8156 -3.6551 4.2305 14 6 4.1859 -3.6209 5.7160 15 6 3.9667 -5.0191 6.3159 16 1 4.0737 -5.0218 7.4006 17 6 2.5731 -5.5139 5.8648 18 6 2.8228 -6.2244 4.5182 19 6 4.3446 -6.0948 4.2784 20 1 4.7520 -6.9526 3.7431 21 6 4.5913 -4.7744 3.5301 22 7 4.9181 -5.9420 5.6417 23 6 4.2791 -2.0210 -0.9405 24 6 4.2858 -0.4926 -1.0226 25 1 -0.4850 0.8401 0.0004 26 1 3.6696 -0.2548 2.0234 27 1 5.1677 -1.0310 1.4564 28 1 3.6696 -1.5083 4.1272 29 1 5.2476 -2.1630 3.6275 30 1 2.7457 -3.8362 4.1276 31 1 5.2326 -3.3370 5.8249 32 1 3.5542 -2.8986 6.2331 33 1 1.8966 -4.6701 5.7288 34 1 2.1652 -6.2145 6.5934 35 1 2.2692 -5.7300 3.7200 36 1 2.5373 -7.2743 4.5828 37 1 4.2466 -4.8684 2.5002 38 1 5.6561 -4.5413 3.5387 39 1 4.9589 -6.8305 6.1181 40 1 5.1949 -2.5117 -0.6108 41 1 3.6981 -2.5624 -1.6871 42 1 3.7093 -0.0292 -1.8231 43 1 5.2059 0.0228 -0.7468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719268251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:31 Heat of formation + Delta-G solvation = -23.738062 kcal Electronic energy + Delta-G solvation = -20993.170305 eV Core-core repulsion = 18038.581839 eV Total energy + Delta-G solvation = -2954.588466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52295 -37.72934 -35.95311 -32.91974 -32.01370 -31.22055 -30.03160 -27.11286 -25.68805 -24.64634 -24.05268 -21.67395 -21.37987 -20.23748 -19.03610 -18.64512 -17.09962 -16.40222 -16.03963 -15.32371 -14.99333 -14.62313 -14.12907 -13.97143 -13.64378 -13.12782 -13.08601 -12.73974 -12.61233 -12.45696 -12.13982 -11.76141 -11.55006 -11.38407 -11.09168 -11.07352 -10.77354 -10.43561 -10.39453 -10.29413 -10.22172 -10.08014 -9.97546 -9.51669 -9.17019 -8.79156 -8.71922 -8.47749 -8.41726 -6.03993 -4.04357 3.30966 3.39660 3.42727 4.06375 4.20306 4.46233 4.67449 4.70608 4.87591 5.04210 5.13053 5.17744 5.23797 5.27669 5.31992 5.40956 5.48729 5.67164 5.74204 5.79804 5.84325 5.88923 5.98500 6.00980 6.04687 6.10075 6.10435 6.16377 6.21522 6.27963 6.30827 6.45863 6.46553 6.50821 6.63794 6.74952 6.76854 7.10082 7.19234 7.28346 7.80275 8.06190 8.60615 9.01837 9.59178 11.08500 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.004807 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.168083 B = 5823.891019 C = 6037.357407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.472 4.472 8 H 0.078 0.922 9 C 0.002 3.998 10 C 0.104 3.896 11 O -0.363 6.363 12 C 0.064 3.936 13 C -0.085 4.085 14 C -0.102 4.102 15 C 0.067 3.933 16 H 0.090 0.910 17 C -0.153 4.153 18 C -0.154 4.154 19 C 0.064 3.936 20 H 0.090 0.910 21 C -0.096 4.096 22 N -0.657 5.657 23 C -0.173 4.173 24 C -0.200 4.200 25 H 0.263 0.737 26 H 0.042 0.958 27 H 0.020 0.980 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.329 0.671 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.310 -9.325 11.605 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.128 4.128 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.510 4.510 8 H 0.096 0.904 9 C 0.001 3.999 10 C 0.027 3.973 11 O -0.282 6.282 12 C -0.013 4.013 13 C -0.103 4.103 14 C -0.139 4.139 15 C -0.043 4.043 16 H 0.108 0.892 17 C -0.193 4.193 18 C -0.194 4.194 19 C -0.046 4.046 20 H 0.108 0.892 21 C -0.134 4.134 22 N -0.283 5.283 23 C -0.210 4.210 24 C -0.237 4.237 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.612 -8.860 11.360 17.319 hybrid contribution -0.353 0.693 0.253 0.818 sum 9.260 -8.166 11.614 16.950 Atomic orbital electron populations 1.69903 1.06263 1.26881 1.50796 1.24974 0.94591 0.98852 0.94342 0.86886 0.80149 0.83567 0.78654 1.20309 1.22199 1.18792 1.20230 0.86466 0.94478 1.49782 0.90369 1.19313 0.94900 0.99944 0.85710 1.22273 0.94854 0.86698 0.93474 1.87964 1.79728 1.39569 1.20934 1.22427 0.97339 0.96736 0.84795 1.21216 1.01411 0.94099 0.93590 1.21683 1.01947 0.95384 0.94935 1.22849 0.89662 0.94005 0.97813 0.89221 1.23022 0.98742 1.00599 0.96892 1.23025 0.98029 1.00211 0.98092 1.22933 0.92061 0.98626 0.90932 0.89223 1.21672 1.00327 0.92476 0.98955 1.63771 1.46503 1.14984 1.03093 1.22754 1.01399 0.92403 1.04456 1.23004 1.01473 0.95362 1.03895 0.92706 0.93962 0.96184 0.94181 0.94544 0.89990 0.91182 0.91728 0.90563 0.92193 0.90116 0.92221 0.90580 0.91664 0.85622 0.90920 0.89555 0.89171 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.91 24.75 -169.99 -4.21 17.70 16 4 H -0.28 -6.73 7.10 56.52 0.40 -6.33 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.21 5.99 56.52 0.34 -5.87 16 7 C -0.47 -13.52 9.36 -34.44 -0.32 -13.85 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.00 0.06 1.06 -155.66 -0.17 -0.11 16 10 C 0.10 2.29 5.42 37.16 0.20 2.49 16 11 O -0.36 -7.73 9.87 -35.23 -0.35 -8.08 16 12 C 0.06 1.08 5.33 37.16 0.20 1.28 16 13 C -0.08 -1.21 2.07 -90.48 -0.19 -1.40 16 14 C -0.10 -1.20 4.90 -26.29 -0.13 -1.33 16 15 C 0.07 0.69 4.54 -65.49 -0.30 0.39 16 16 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.15 -1.61 5.97 -25.21 -0.15 -1.76 16 18 C -0.15 -1.73 5.97 -25.22 -0.15 -1.88 16 19 C 0.06 0.73 4.54 -65.48 -0.30 0.44 16 20 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 21 C -0.10 -1.33 4.71 -26.27 -0.12 -1.45 16 22 N -0.66 -6.93 7.11 -94.67 -0.67 -7.60 16 23 C -0.17 -3.67 9.96 -26.70 -0.27 -3.93 16 24 C -0.20 -4.34 7.57 -26.70 -0.20 -4.54 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 26 H 0.04 0.97 6.86 -51.93 -0.36 0.61 16 27 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.28 5.51 -51.93 -0.29 1.00 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.87 7.04 -51.93 -0.37 0.50 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.05 7.03 -51.93 -0.37 0.68 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.33 2.88 8.92 -39.29 -0.35 2.53 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 42 H 0.09 2.03 7.16 -51.93 -0.37 1.66 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -30.51 325.40 -9.16 -39.67 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.62 Total: 3.97 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -1.99 Total: -23.60 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.10 Total: -34.57 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.35 Total: -8.08 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.21 Total: 17.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.51 -9.16 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719268251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.932 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds