Wall clock time and date at job start Mon Mar 30 2020 07:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99935 * 2 1 4 4 H 1.48507 * 109.46941 * 266.09630 * 3 2 1 5 5 H 1.48496 * 109.47210 * 26.09750 * 3 2 1 6 6 H 1.48501 * 109.47036 * 146.09963 * 3 2 1 7 7 C 1.37875 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00709 * 4.06448 * 7 2 1 9 9 C 1.50705 * 119.99690 * 184.06977 * 7 2 1 10 10 C 1.52999 * 115.55464 * 84.85580 * 9 7 2 11 11 O 1.42903 * 109.47032 * 65.50241 * 10 9 7 12 12 C 1.42892 * 114.00238 * 183.10154 * 11 10 9 13 13 C 1.52998 * 109.47294 * 183.05329 * 12 11 10 14 14 C 1.53143 * 109.42795 * 184.02233 * 13 12 11 15 15 C 1.53713 * 108.88836 * 185.95785 * 14 13 12 16 16 H 1.08999 * 112.12593 * 188.37072 * 15 14 13 17 17 C 1.54609 * 107.80978 * 312.37976 * 15 14 13 18 18 C 1.54283 * 104.84286 * 88.55552 * 17 15 14 19 19 C 1.54603 * 104.83987 * 0.02562 * 18 17 15 20 20 H 1.09007 * 112.21277 * 147.48142 * 19 18 17 21 21 C 1.53132 * 109.38850 * 63.78660 * 13 12 11 22 22 N 1.48714 * 107.23731 * 64.08932 * 15 14 13 23 23 C 1.52998 * 117.49611 * 230.52814 * 9 7 2 24 24 C 1.52998 * 117.49580 * 299.18285 * 9 7 2 25 25 H 0.97001 * 119.99940 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47258 * 305.50633 * 10 9 7 27 27 H 1.08994 * 109.47093 * 185.50278 * 10 9 7 28 28 H 1.08997 * 109.47371 * 63.04867 * 12 11 10 29 29 H 1.09006 * 109.46919 * 303.05261 * 12 11 10 30 30 H 1.08998 * 109.42759 * 303.91369 * 13 12 11 31 31 H 1.08997 * 109.56769 * 305.77977 * 14 13 12 32 32 H 1.09003 * 109.56349 * 66.13827 * 14 13 12 33 33 H 1.09007 * 110.36276 * 329.71322 * 17 15 14 34 34 H 1.09003 * 110.36551 * 207.40248 * 17 15 14 35 35 H 1.08997 * 110.37006 * 241.15770 * 18 17 15 36 36 H 1.09000 * 110.45272 * 118.89131 * 18 17 15 37 37 H 1.09006 * 109.56987 * 293.89033 * 21 13 12 38 38 H 1.09003 * 109.57079 * 54.12503 * 21 13 12 39 39 H 1.00898 * 110.99610 * 168.34711 * 22 15 14 40 40 H 1.09004 * 117.50002 * 215.00543 * 23 9 7 41 41 H 1.09005 * 117.50085 * 0.02562 * 23 9 7 42 42 H 1.08995 * 117.50492 * 359.97438 * 24 9 7 43 43 H 1.09003 * 117.49488 * 144.97870 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5792 1.9988 -1.3969 5 1 1.4078 2.6751 0.6159 6 1 3.5031 1.4654 0.7809 7 6 2.0045 -1.1940 -0.0005 8 1 1.4667 -2.1282 -0.0672 9 6 3.5087 -1.1957 0.0921 10 6 4.0828 -1.1221 1.5084 11 8 3.7383 -2.3099 2.2243 12 6 4.1686 -2.3128 3.5869 13 6 3.8156 -3.6551 4.2305 14 6 4.1859 -3.6209 5.7160 15 6 3.9667 -5.0191 6.3159 16 1 4.0737 -5.0218 7.4006 17 6 2.5731 -5.5139 5.8648 18 6 2.8228 -6.2244 4.5182 19 6 4.3446 -6.0948 4.2784 20 1 4.7520 -6.9526 3.7431 21 6 4.5913 -4.7744 3.5301 22 7 4.9181 -5.9420 5.6417 23 6 4.2791 -2.0210 -0.9405 24 6 4.2858 -0.4926 -1.0226 25 1 -0.4850 0.8401 0.0004 26 1 3.6696 -0.2548 2.0234 27 1 5.1677 -1.0310 1.4564 28 1 3.6696 -1.5083 4.1272 29 1 5.2476 -2.1630 3.6275 30 1 2.7457 -3.8362 4.1276 31 1 5.2326 -3.3370 5.8249 32 1 3.5542 -2.8986 6.2331 33 1 1.8966 -4.6701 5.7288 34 1 2.1652 -6.2145 6.5934 35 1 2.2692 -5.7300 3.7200 36 1 2.5373 -7.2743 4.5828 37 1 4.2466 -4.8684 2.5002 38 1 5.6561 -4.5413 3.5387 39 1 4.9589 -6.8305 6.1181 40 1 5.1949 -2.5117 -0.6108 41 1 3.6981 -2.5624 -1.6871 42 1 3.7093 -0.0292 -1.8231 43 1 5.2059 0.0228 -0.7468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719268251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:31 Heat of formation + Delta-G solvation = -44.289912 kcal Electronic energy + Delta-G solvation = -20994.061500 eV Core-core repulsion = 18038.581839 eV Total energy + Delta-G solvation = -2955.479661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48209 -39.39512 -37.57999 -34.26142 -34.06430 -32.15561 -30.89293 -28.74175 -27.48157 -26.27860 -25.04714 -23.31635 -22.58396 -21.13055 -20.92010 -19.69908 -18.47074 -17.94706 -17.36753 -17.08355 -16.52018 -16.16583 -15.66726 -15.02127 -14.79611 -14.64517 -14.56427 -14.31260 -13.78362 -13.60361 -13.44755 -13.15493 -13.09456 -12.77299 -12.59118 -12.33391 -12.17578 -12.02877 -11.94093 -11.55958 -11.49947 -11.26100 -11.19846 -11.16601 -10.98551 -10.63274 -10.39683 -10.20954 -9.64171 -8.28094 -6.34010 1.35040 1.36059 1.48589 2.37027 2.70074 3.05640 3.21105 3.39719 3.74711 3.77814 3.94267 4.06565 4.13302 4.23544 4.25325 4.30352 4.33065 4.40765 4.42612 4.45040 4.54825 4.62043 4.64555 4.72771 4.77654 4.83394 4.89370 4.97127 5.04132 5.06600 5.07991 5.14495 5.25251 5.32861 5.34570 5.35029 5.47198 5.51854 5.70984 5.82879 6.31095 6.52934 6.56421 6.73830 7.33568 8.88544 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.004807 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.168083 B = 5823.891019 C = 6037.357407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.015 3.985 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.236 1.236 7 C -0.477 4.477 8 H 0.022 0.978 9 C -0.034 4.034 10 C 0.109 3.891 11 O -0.391 6.391 12 C 0.059 3.941 13 C -0.081 4.081 14 C -0.098 4.098 15 C 0.071 3.929 16 H 0.115 0.885 17 C -0.152 4.152 18 C -0.155 4.155 19 C 0.069 3.931 20 H 0.102 0.898 21 C -0.093 4.093 22 N -0.657 5.657 23 C -0.160 4.160 24 C -0.184 4.184 25 H 0.265 0.735 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.344 0.656 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.361 -9.105 12.999 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.181 4.181 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.159 1.159 7 C -0.515 4.515 8 H 0.040 0.960 9 C -0.035 4.035 10 C 0.032 3.968 11 O -0.311 6.311 12 C -0.018 4.018 13 C -0.100 4.100 14 C -0.136 4.136 15 C -0.039 4.039 16 H 0.133 0.867 17 C -0.191 4.191 18 C -0.194 4.194 19 C -0.041 4.041 20 H 0.120 0.880 21 C -0.131 4.131 22 N -0.285 5.285 23 C -0.197 4.197 24 C -0.221 4.221 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.160 0.840 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.690 -8.667 12.760 19.975 hybrid contribution -1.375 0.496 -0.192 1.474 sum 11.315 -8.171 12.568 18.782 Atomic orbital electron populations 1.70069 1.08405 1.27987 1.52867 1.25884 0.95321 1.03018 0.93888 0.85849 0.79653 0.78076 0.79738 1.18713 1.22439 1.15903 1.20354 0.89465 0.92397 1.49248 0.95987 1.19283 0.92373 1.03770 0.88031 1.22116 0.96350 0.86430 0.91895 1.87944 1.80541 1.39435 1.23154 1.22684 0.98316 0.98047 0.82734 1.21203 1.00179 0.93127 0.95484 1.21671 1.02171 0.96899 0.92830 1.22891 0.89184 0.92808 0.98983 0.86740 1.23011 0.98876 1.00412 0.96808 1.23006 0.97759 1.00906 0.97747 1.22862 0.92152 0.97583 0.91519 0.87976 1.21593 0.99864 0.93803 0.97849 1.63697 1.46251 1.15969 1.02553 1.22787 1.01622 0.92721 1.02577 1.23054 1.01813 0.95636 1.01615 0.92640 0.95345 0.92891 0.94455 0.92676 0.92221 0.90779 0.91137 0.92124 0.90319 0.92974 0.90699 0.93240 0.91656 0.83958 0.87946 0.90667 0.90241 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.02 0.91 5.47 84.65 0.46 1.38 16 3 Si 0.94 44.89 24.75 68.60 1.70 46.59 16 4 H -0.26 -11.80 7.10 99.48 0.71 -11.09 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.24 -10.13 5.99 99.48 0.60 -9.54 16 7 C -0.48 -28.42 9.36 25.60 0.24 -28.18 16 8 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 9 C -0.03 -1.60 1.06 -52.93 -0.06 -1.66 16 10 C 0.11 4.63 5.42 71.98 0.39 5.02 16 11 O -0.39 -16.79 9.87 -148.98 -1.47 -18.26 16 12 C 0.06 1.95 5.33 71.98 0.38 2.33 16 13 C -0.08 -2.33 2.07 -10.70 -0.02 -2.35 16 14 C -0.10 -2.15 4.90 30.88 0.15 -1.99 16 15 C 0.07 1.29 4.54 45.35 0.21 1.50 16 16 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 17 C -0.15 -2.98 5.97 31.58 0.19 -2.79 16 18 C -0.15 -3.40 5.97 31.57 0.19 -3.21 16 19 C 0.07 1.48 4.54 45.37 0.21 1.69 16 20 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 21 C -0.09 -2.54 4.71 30.90 0.15 -2.39 16 22 N -0.66 -12.09 7.11 -453.41 -3.22 -15.31 16 23 C -0.16 -6.52 9.96 30.62 0.30 -6.22 16 24 C -0.18 -7.44 7.57 30.62 0.23 -7.21 16 25 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 26 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 27 H 0.05 1.90 8.09 -2.39 -0.02 1.88 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.06 1.96 5.51 -2.39 -0.01 1.95 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.38 7.04 -2.38 -0.02 1.37 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.43 7.03 -2.39 -0.02 1.42 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.58 7.96 -2.38 -0.02 1.56 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.34 4.88 8.92 -89.70 -0.80 4.08 16 40 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 41 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 42 H 0.08 3.38 7.16 -2.39 -0.02 3.37 16 43 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 Total: -1.00 -69.10 325.40 0.39 -68.71 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.06 Total: 23.35 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 3.02 Total: -44.09 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -2.92 Total: -76.31 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -1.47 Total: -18.26 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.70 Total: 46.59 kcal Total: -69.10 0.39 -68.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719268251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.420 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds