Wall clock time and date at job start Mon Mar 30 2020 07:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48497 * 109.47448 * 270.00395 * 3 2 1 5 5 H 1.48507 * 109.46946 * 29.99820 * 3 2 1 6 6 H 1.48504 * 109.47327 * 149.99841 * 3 2 1 7 7 C 1.37884 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99365 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99844 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46849 * 174.19670 * 9 7 2 11 11 C 1.46896 * 110.99701 * 159.86131 * 10 9 7 12 12 C 1.53008 * 109.46976 * 189.99932 * 11 10 9 13 13 H 1.08998 * 109.95919 * 305.20271 * 12 11 10 14 14 C 1.56428 * 110.00773 * 183.93612 * 12 11 10 15 15 C 1.49468 * 99.98563 * 219.85404 * 14 12 11 16 16 H 1.09001 * 108.10469 * 290.13003 * 15 14 12 17 17 C 1.49062 * 130.06207 * 155.46755 * 15 14 12 18 18 C 1.55844 * 102.12322 * 201.04227 * 17 15 14 19 19 C 1.55557 * 105.72460 * 24.42212 * 18 17 15 20 20 C 1.52380 * 104.74222 * 7.14146 * 19 18 17 21 21 H 1.08995 * 111.55915 * 83.70823 * 20 19 18 22 22 O 1.41650 * 121.04940 * 216.91080 * 20 19 18 23 23 C 1.46892 * 111.00016 * 283.81770 * 10 9 7 24 24 C 1.53001 * 117.49943 * 138.07906 * 23 10 9 25 25 C 1.53001 * 117.50062 * 69.45530 * 23 10 9 26 26 H 0.96999 * 120.00041 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47856 * 54.19758 * 9 7 2 28 28 H 1.09002 * 109.46894 * 294.19316 * 9 7 2 29 29 H 1.08998 * 109.47179 * 70.00382 * 11 10 9 30 30 H 1.09000 * 109.47858 * 310.00142 * 11 10 9 31 31 H 1.08998 * 111.30703 * 337.53682 * 14 12 11 32 32 H 1.08994 * 111.30692 * 102.12127 * 14 12 11 33 33 H 1.08994 * 110.94657 * 319.33269 * 17 15 14 34 34 H 1.08999 * 110.94784 * 83.04610 * 17 15 14 35 35 H 1.09005 * 110.63718 * 265.17928 * 18 17 15 36 36 H 1.08991 * 109.95439 * 143.30326 * 18 17 15 37 37 H 1.09003 * 110.38401 * 248.32667 * 19 18 17 38 38 H 1.08996 * 110.48153 * 126.00315 * 19 18 17 39 39 H 1.09005 * 115.55128 * 283.78739 * 23 10 9 40 40 H 1.08997 * 117.49908 * 0.02562 * 24 23 10 41 41 H 1.09000 * 117.49777 * 145.02257 * 24 23 10 42 42 H 1.09000 * 117.50422 * 214.98378 * 25 23 10 43 43 H 1.09004 * 117.49742 * 0.02562 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.1996 -3.6121 -0.1421 11 6 1.6039 -4.8729 0.3198 12 6 2.6867 -5.9514 0.3943 13 1 3.1921 -6.0383 -0.5675 14 6 2.0486 -7.3241 0.7886 15 6 3.0972 -7.8391 1.7209 16 1 3.9814 -8.0857 1.1332 17 6 2.9907 -8.8240 2.8347 18 6 4.2457 -8.4838 3.6937 19 6 4.5868 -7.0004 3.3726 20 6 3.4302 -6.5151 2.5073 21 1 2.5831 -6.1948 3.1139 22 8 3.6479 -5.6189 1.4323 23 6 2.6719 -3.7295 -1.5281 24 6 4.1596 -4.0126 -1.7459 25 6 3.5910 -2.6267 -2.0571 26 1 -0.4850 0.8400 0.0004 27 1 0.5491 -2.5127 -0.8354 28 1 0.7043 -2.6038 0.9354 29 1 0.8275 -5.1852 -0.3787 30 1 1.1669 -4.7279 1.3077 31 1 1.0966 -7.1857 1.3010 32 1 1.9368 -7.9729 -0.0800 33 1 2.0746 -8.6700 3.4048 34 1 3.0467 -9.8455 2.4583 35 1 5.0823 -9.1284 3.4238 36 1 4.0129 -8.5948 4.7526 37 1 5.5254 -6.9373 2.8219 38 1 4.6458 -6.4154 4.2903 39 1 1.9664 -4.1760 -2.2290 40 1 4.7879 -4.1121 -0.8608 41 1 4.4332 -4.6456 -2.5901 42 1 3.4905 -2.3478 -3.1060 43 1 3.8456 -1.8142 -1.3766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720867718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:14 Heat of formation + Delta-G solvation = -4.495099 kcal Electronic energy + Delta-G solvation = -21042.384221 eV Core-core repulsion = 18088.630192 eV Total energy + Delta-G solvation = -2953.754029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55160 -37.64088 -35.69089 -33.51788 -32.53028 -31.63806 -28.61330 -27.77741 -26.25797 -23.97203 -22.20443 -21.53966 -20.90353 -20.37826 -20.11687 -19.13920 -17.00724 -16.45850 -15.51555 -15.03826 -14.82337 -14.63886 -14.47137 -14.25831 -13.57720 -13.43572 -12.91937 -12.51317 -12.29620 -12.13028 -11.98598 -11.58013 -11.40703 -11.22424 -11.15972 -10.94078 -10.77729 -10.69111 -10.65845 -10.50739 -10.44498 -10.05393 -9.79219 -9.52732 -9.20652 -9.06896 -8.89497 -8.33074 -7.14977 -5.94324 -3.93387 3.36468 3.42547 3.47351 3.57984 4.44343 4.55376 4.56139 4.66054 4.70108 4.85900 5.04608 5.13791 5.15246 5.35488 5.40045 5.41088 5.45469 5.57559 5.66900 5.74412 5.76653 5.78441 5.85377 5.87364 5.90964 6.00904 6.10125 6.16616 6.24284 6.25865 6.28954 6.32790 6.44671 6.57486 6.83207 7.11617 7.25805 7.39891 7.44682 7.94180 8.20370 8.30801 8.64054 9.13377 9.68949 11.16436 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026252 B = 0.004735 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.314828 B = 5912.504721 C = 6143.365078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.068 0.932 9 C 0.196 3.804 10 N -0.500 5.500 11 C 0.049 3.951 12 C 0.090 3.910 13 H 0.089 0.911 14 C -0.130 4.130 15 C -0.149 4.149 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.119 4.119 19 C -0.116 4.116 20 C 0.061 3.939 21 H 0.067 0.933 22 O -0.343 6.343 23 C 0.023 3.977 24 C -0.185 4.185 25 C -0.155 4.155 26 H 0.259 0.741 27 H -0.004 1.004 28 H 0.023 0.977 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 -17.409 2.791 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.531 4.531 8 H 0.086 0.914 9 C 0.071 3.929 10 N -0.225 5.225 11 C -0.080 4.080 12 C 0.033 3.967 13 H 0.107 0.893 14 C -0.168 4.168 15 C -0.168 4.168 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.156 4.156 19 C -0.153 4.153 20 C 0.002 3.998 21 H 0.084 0.916 22 O -0.262 6.262 23 C -0.086 4.086 24 C -0.223 4.223 25 C -0.192 4.192 26 H 0.069 0.931 27 H 0.014 0.986 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.358 -16.987 3.088 18.399 hybrid contribution -0.586 0.682 -0.572 1.066 sum 5.772 -16.304 2.517 17.478 Atomic orbital electron populations 1.69960 1.06029 1.26525 1.51820 1.24979 0.94814 0.99142 0.95848 0.86567 0.79891 0.83416 0.77991 1.20787 1.21410 1.19774 1.21235 0.93554 0.89630 1.48711 0.91437 1.19712 0.89798 0.87570 0.95813 1.61850 1.40532 1.02926 1.17146 1.22401 0.94186 0.91151 1.00230 1.23661 0.89702 0.91540 0.91827 0.89324 1.22034 0.98649 0.96697 0.99467 1.22010 1.00239 0.97555 0.96979 0.90912 1.21160 0.98453 0.98320 0.95903 1.22760 0.97485 0.95492 0.99888 1.22001 0.98457 0.95425 0.99466 1.23348 0.97310 0.88262 0.90900 0.91556 1.88647 1.56050 1.55254 1.26220 1.22070 0.91429 1.04189 0.90949 1.23053 0.96978 1.00099 1.02145 1.23086 1.02490 0.92991 1.00634 0.93125 0.98579 0.95945 0.95121 0.91078 0.90569 0.90422 0.91278 0.91536 0.91416 0.91458 0.90834 0.91117 0.91681 0.88536 0.90540 0.90342 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.49 -13.94 7.82 -34.44 -0.27 -14.21 16 8 H 0.07 1.91 5.78 -52.49 -0.30 1.60 16 9 C 0.20 5.20 4.77 -4.98 -0.02 5.18 16 10 N -0.50 -11.15 4.55 -228.08 -1.04 -12.19 16 11 C 0.05 0.92 4.55 -3.82 -0.02 0.90 16 12 C 0.09 1.42 3.36 -24.88 -0.08 1.34 16 13 H 0.09 1.41 6.31 -51.93 -0.33 1.08 16 14 C -0.13 -1.58 6.42 -26.63 -0.17 -1.75 16 15 C -0.15 -1.71 2.66 -91.81 -0.24 -1.96 16 16 H 0.07 0.87 8.06 -51.93 -0.42 0.46 16 17 C -0.10 -0.93 6.66 -27.15 -0.18 -1.11 16 18 C -0.12 -1.04 6.93 -23.85 -0.17 -1.21 16 19 C -0.12 -1.31 6.70 -25.69 -0.17 -1.48 16 20 C 0.06 0.84 3.83 -24.56 -0.09 0.74 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 O -0.34 -6.03 11.10 -35.19 -0.39 -6.42 16 23 C 0.02 0.46 4.19 -67.72 -0.28 0.18 16 24 C -0.18 -3.25 9.15 -26.73 -0.24 -3.50 16 25 C -0.15 -3.09 9.47 -26.73 -0.25 -3.35 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.00 -0.11 7.99 -51.93 -0.42 -0.52 16 28 H 0.02 0.64 7.73 -51.93 -0.40 0.23 16 29 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.07 1.37 7.83 -51.93 -0.41 0.96 16 31 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.12 2.63 5.45 -51.93 -0.28 2.35 16 LS Contribution 332.95 15.07 5.02 5.02 Total: -1.00 -30.60 332.95 -10.59 -41.19 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.60 Total: 0.68 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.30 Total: -18.82 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.30 Total: -38.64 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.39 Total: -6.42 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.60 -10.59 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720867718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.696 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds